Wall clock time and date at job start Tue Mar 31 2020 00:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42900 * 109.47271 * 2 1 4 4 C 1.35458 * 117.00068 * 179.97438 * 3 2 1 5 5 N 1.32320 * 119.16637 * 0.02562 * 4 3 2 6 6 C 1.32448 * 120.90165 * 180.02562 * 5 4 3 7 7 C 1.38230 * 119.25025 * 359.97438 * 6 5 4 8 8 C 1.39380 * 118.46796 * 0.28032 * 7 6 5 9 9 O 1.35509 * 120.47815 * 179.72640 * 8 7 6 10 10 C 1.42898 * 117.00271 * 180.02562 * 9 8 7 11 11 C 1.53936 * 113.73363 * 248.76237 * 10 9 8 12 12 N 1.48181 * 86.10576 * 221.95595 * 11 10 9 13 13 C 1.46904 * 111.07186 * 137.52141 * 12 11 10 14 14 C 1.50696 * 109.47228 * 70.56838 * 13 12 11 15 15 H 1.08006 * 119.99817 * 0.02562 * 14 13 12 16 16 C 1.37868 * 120.00165 * 180.02562 * 14 13 12 17 17 N 1.31520 * 120.00019 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00100 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47228 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47307 * 120.00092 * 18 16 14 21 21 H 1.48505 * 109.47179 * 239.99681 * 18 16 14 22 22 C 1.47966 * 90.79763 * 24.60067 * 12 11 10 23 23 N 1.32288 * 119.16276 * 180.02562 * 4 3 2 24 24 H 1.08999 * 109.47273 * 300.00293 * 1 2 3 25 25 H 1.09003 * 109.46792 * 60.00437 * 1 2 3 26 26 H 1.09000 * 109.47015 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47775 * 239.99776 * 2 1 3 28 28 H 1.09006 * 109.47296 * 119.99496 * 2 1 3 29 29 H 1.08005 * 120.37156 * 180.02562 * 6 5 4 30 30 H 1.08002 * 120.76379 * 180.02562 * 7 6 5 31 31 H 1.09003 * 112.93860 * 20.32832 * 10 9 8 32 32 H 1.09006 * 113.75757 * 336.24383 * 11 10 9 33 33 H 1.09002 * 113.75809 * 107.59998 * 11 10 9 34 34 H 1.08995 * 109.47013 * 190.57229 * 13 12 11 35 35 H 1.08999 * 109.46898 * 310.56665 * 13 12 11 36 36 H 0.97000 * 120.00015 * 180.02562 * 17 16 14 37 37 H 1.08997 * 113.75834 * 221.08564 * 22 12 11 38 38 H 1.09001 * 113.75943 * 89.71913 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3492 1.5247 0.0005 5 7 4.1399 0.4637 0.0005 6 6 5.4576 0.5974 0.0015 7 6 6.0079 1.8655 0.0021 8 6 5.1483 2.9627 0.0076 9 8 5.6438 4.2239 0.0139 10 6 4.6960 5.2933 0.0198 11 6 4.6666 6.1024 -1.2895 12 7 4.5708 7.3034 -0.4269 13 6 5.4364 8.3812 -0.9241 14 6 4.8653 8.9339 -2.2044 15 1 3.9505 8.5256 -2.6082 16 6 5.5104 9.9607 -2.8604 17 7 6.6246 10.4575 -2.3690 18 14 4.8029 10.6453 -4.4479 19 1 3.5523 9.9194 -4.7860 20 1 4.5047 12.0897 -4.2746 21 1 5.7888 10.4715 -5.5447 22 6 5.2156 6.5781 0.6900 23 7 3.8369 2.7544 0.0011 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 6.0950 -0.2745 0.0011 30 1 7.0791 2.0028 0.0025 31 1 3.7099 4.9851 0.3673 32 1 5.5926 6.0454 -1.8618 33 1 3.7787 5.9239 -1.8961 34 1 5.4928 9.1747 -0.1790 35 1 6.4353 7.9875 -1.1119 36 1 7.0783 11.1802 -2.8303 37 1 4.7655 6.7791 1.6622 38 1 6.3025 6.6606 0.6980 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234437097.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:11 Heat of formation + Delta-G solvation = 20.182005 kcal Electronic energy + Delta-G solvation = -21040.955278 eV Core-core repulsion = 17693.360272 eV Total energy + Delta-G solvation = -3347.595006 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.44120 -39.79173 -38.60457 -37.09390 -33.50392 -32.89420 -32.07511 -30.75893 -29.15064 -25.81577 -25.43465 -24.54384 -24.19614 -22.75481 -21.60595 -19.56534 -19.39820 -17.91972 -17.22064 -16.84052 -16.41034 -15.59639 -15.54696 -15.33051 -14.65142 -14.50681 -14.18193 -14.13091 -13.90817 -13.17362 -12.95932 -12.54827 -12.44298 -12.11406 -11.95332 -11.88551 -11.61658 -11.16428 -11.11277 -10.94634 -10.76894 -10.59140 -10.30572 -9.82311 -9.71663 -9.45962 -9.17985 -8.87839 -8.52110 -7.89307 -6.07237 -4.09210 0.90485 1.03525 2.23867 2.98033 3.29543 3.36838 3.42563 3.63463 3.86852 4.39661 4.43181 4.66942 4.69417 4.71006 4.74718 4.87073 5.06207 5.06569 5.24675 5.29147 5.37864 5.47848 5.52998 5.65278 5.76115 5.89235 6.01298 6.11011 6.30804 6.39317 6.59344 6.62498 6.96171 7.15951 7.26990 7.58659 7.83321 7.94353 8.05168 8.36824 8.98206 9.55501 11.04088 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.023279 B = 0.003359 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.530117 B = 8332.783000 C = 8939.489986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.073 3.927 3 O -0.289 6.289 4 C 0.539 3.461 5 N -0.596 5.596 6 C 0.207 3.793 7 C -0.287 4.287 8 C 0.409 3.591 9 O -0.283 6.283 10 C 0.045 3.955 11 C 0.014 3.986 12 N -0.471 5.471 13 C 0.163 3.837 14 C -0.511 4.511 15 H 0.063 0.937 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.899 3.101 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.284 1.284 22 C 0.004 3.996 23 N -0.579 5.579 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.177 0.823 30 H 0.156 0.844 31 H 0.123 0.877 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.036 0.964 35 H 0.002 0.998 36 H 0.262 0.738 37 H 0.089 0.911 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.488 -22.876 6.199 24.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.003 4.003 3 O -0.191 6.191 4 C 0.236 3.764 5 N -0.331 5.331 6 C 0.045 3.955 7 C -0.311 4.311 8 C 0.222 3.778 9 O -0.185 6.185 10 C -0.011 4.011 11 C -0.115 4.115 12 N -0.196 5.196 13 C 0.037 3.963 14 C -0.550 4.550 15 H 0.082 0.918 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.727 3.273 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.210 1.210 22 C -0.125 4.125 23 N -0.321 5.321 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.100 0.900 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.194 0.806 30 H 0.173 0.827 31 H 0.140 0.860 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.054 0.946 35 H 0.019 0.981 36 H 0.071 0.929 37 H 0.107 0.893 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.941 -22.196 6.252 23.812 hybrid contribution 1.400 0.309 -1.052 1.779 sum -4.541 -21.887 5.199 22.950 Atomic orbital electron populations 1.21841 0.92518 1.03015 1.03767 1.22729 0.94910 0.79775 1.02888 1.86092 1.14859 1.31438 1.86663 1.20124 0.85413 0.84035 0.86832 1.68116 1.06685 1.33118 1.25219 1.22711 0.89430 0.96447 0.86895 1.21813 1.02542 0.91555 1.15163 1.19838 0.86445 0.86995 0.84515 1.86446 1.36349 1.11037 1.84620 1.25149 0.93608 0.82505 0.99846 1.24216 1.02493 0.90064 0.94772 1.68643 1.43458 1.04172 1.03295 1.20237 0.90379 0.89463 0.96252 1.21123 1.09337 1.17820 1.06681 0.91842 1.24993 0.94921 0.96563 0.98068 1.69968 1.17257 1.26716 1.39734 0.86417 0.79095 0.78847 0.82953 1.19603 1.20905 1.21027 1.24247 0.99546 0.90323 0.98346 1.66993 1.14562 1.24079 1.26503 0.91414 0.91359 0.89980 0.91178 0.91220 0.80570 0.82665 0.85976 0.90578 0.89573 0.94621 0.98062 0.92879 0.89270 0.90798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 10.28 37.15 0.38 -0.67 16 2 C 0.07 0.66 6.01 37.15 0.22 0.88 16 3 O -0.29 -3.86 10.19 -18.07 -0.18 -4.04 16 4 C 0.54 7.70 8.49 -91.28 -0.77 6.92 16 5 N -0.60 -7.17 9.22 -14.80 -0.14 -7.31 16 6 C 0.21 1.99 11.29 -17.29 -0.20 1.79 16 7 C -0.29 -3.20 10.12 -39.16 -0.40 -3.60 16 8 C 0.41 6.06 7.53 -16.72 -0.13 5.93 16 9 O -0.28 -4.60 10.15 -18.22 -0.18 -4.79 16 10 C 0.05 0.79 4.34 -25.80 -0.11 0.67 16 11 C 0.01 0.27 7.32 -2.64 -0.02 0.26 16 12 N -0.47 -10.51 6.25 -239.74 -1.50 -12.01 16 13 C 0.16 4.30 4.58 -4.98 -0.02 4.28 16 14 C -0.51 -14.62 8.84 -34.45 -0.30 -14.93 16 15 H 0.06 1.81 7.80 -52.48 -0.41 1.40 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 18 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 C 0.00 0.08 7.81 -2.76 -0.02 0.06 16 23 N -0.58 -9.19 8.80 -14.79 -0.13 -9.32 16 24 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 28 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 29 H 0.18 0.92 8.06 -52.48 -0.42 0.50 16 30 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16 31 H 0.12 2.13 6.96 -51.93 -0.36 1.77 16 32 H 0.08 1.61 7.79 -51.93 -0.40 1.20 16 33 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 34 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.00 0.04 7.70 -51.93 -0.40 -0.36 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 38 H 0.07 1.36 7.79 -51.93 -0.40 0.95 16 LS Contribution 328.33 15.07 4.95 4.95 Total: -1.00 -32.53 328.33 -8.27 -40.80 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -5.34 Total: -2.17 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: -1.46 Total: 3.11 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: -1.03 Total: -54.73 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: -0.37 Total: -8.83 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.53 -8.27 -40.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234437097.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.984 kcal (2) G-P(sol) polarization free energy of solvation -32.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds