Wall clock time and date at job start Tue Mar 31 2020 00:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42900 * 109.47271 * 2 1 4 4 C 1.35458 * 117.00068 * 179.97438 * 3 2 1 5 5 N 1.32320 * 119.16637 * 0.02562 * 4 3 2 6 6 C 1.32448 * 120.90165 * 180.02562 * 5 4 3 7 7 C 1.38230 * 119.25025 * 359.97438 * 6 5 4 8 8 C 1.39380 * 118.46796 * 0.28032 * 7 6 5 9 9 O 1.35509 * 120.47815 * 179.72640 * 8 7 6 10 10 C 1.42898 * 117.00271 * 180.02562 * 9 8 7 11 11 C 1.53936 * 113.73363 * 248.76237 * 10 9 8 12 12 N 1.48181 * 86.10576 * 221.95595 * 11 10 9 13 13 C 1.46904 * 111.07186 * 137.52141 * 12 11 10 14 14 C 1.50696 * 109.47228 * 70.56838 * 13 12 11 15 15 H 1.08006 * 119.99817 * 0.02562 * 14 13 12 16 16 C 1.37868 * 120.00165 * 180.02562 * 14 13 12 17 17 N 1.31520 * 120.00019 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00100 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47228 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47307 * 120.00092 * 18 16 14 21 21 H 1.48505 * 109.47179 * 239.99681 * 18 16 14 22 22 C 1.47966 * 90.79763 * 24.60067 * 12 11 10 23 23 N 1.32288 * 119.16276 * 180.02562 * 4 3 2 24 24 H 1.08999 * 109.47273 * 300.00293 * 1 2 3 25 25 H 1.09003 * 109.46792 * 60.00437 * 1 2 3 26 26 H 1.09000 * 109.47015 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47775 * 239.99776 * 2 1 3 28 28 H 1.09006 * 109.47296 * 119.99496 * 2 1 3 29 29 H 1.08005 * 120.37156 * 180.02562 * 6 5 4 30 30 H 1.08002 * 120.76379 * 180.02562 * 7 6 5 31 31 H 1.09003 * 112.93860 * 20.32832 * 10 9 8 32 32 H 1.09006 * 113.75757 * 336.24383 * 11 10 9 33 33 H 1.09002 * 113.75809 * 107.59998 * 11 10 9 34 34 H 1.08995 * 109.47013 * 190.57229 * 13 12 11 35 35 H 1.08999 * 109.46898 * 310.56665 * 13 12 11 36 36 H 0.97000 * 120.00015 * 180.02562 * 17 16 14 37 37 H 1.08997 * 113.75834 * 221.08564 * 22 12 11 38 38 H 1.09001 * 113.75943 * 89.71913 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3492 1.5247 0.0005 5 7 4.1399 0.4637 0.0005 6 6 5.4576 0.5974 0.0015 7 6 6.0079 1.8655 0.0021 8 6 5.1483 2.9627 0.0076 9 8 5.6438 4.2239 0.0139 10 6 4.6960 5.2933 0.0198 11 6 4.6666 6.1024 -1.2895 12 7 4.5708 7.3034 -0.4269 13 6 5.4364 8.3812 -0.9241 14 6 4.8653 8.9339 -2.2044 15 1 3.9505 8.5256 -2.6082 16 6 5.5104 9.9607 -2.8604 17 7 6.6246 10.4575 -2.3690 18 14 4.8029 10.6453 -4.4479 19 1 3.5523 9.9194 -4.7860 20 1 4.5047 12.0897 -4.2746 21 1 5.7888 10.4715 -5.5447 22 6 5.2156 6.5781 0.6900 23 7 3.8369 2.7544 0.0011 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 6.0950 -0.2745 0.0011 30 1 7.0791 2.0028 0.0025 31 1 3.7099 4.9851 0.3673 32 1 5.5926 6.0454 -1.8618 33 1 3.7787 5.9239 -1.8961 34 1 5.4928 9.1747 -0.1790 35 1 6.4353 7.9875 -1.1119 36 1 7.0783 11.1802 -2.8303 37 1 4.7655 6.7791 1.6622 38 1 6.3025 6.6606 0.6980 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234437097.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:11 Heat of formation + Delta-G solvation = -7.215330 kcal Electronic energy + Delta-G solvation = -21042.143316 eV Core-core repulsion = 17693.360272 eV Total energy + Delta-G solvation = -3348.783044 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.45518 -41.16633 -39.69993 -38.34924 -35.05894 -34.46611 -32.89923 -31.72679 -30.94815 -27.54874 -27.02719 -25.58543 -25.30952 -23.77350 -23.17708 -21.11568 -20.42326 -19.12150 -18.58165 -18.19706 -17.75655 -17.03190 -16.68662 -16.51998 -16.29345 -15.83713 -15.44605 -15.35515 -14.75245 -14.64720 -14.20254 -13.85698 -13.77978 -13.47730 -13.39472 -13.27845 -12.85123 -12.62049 -12.55403 -12.30244 -12.05975 -12.03638 -11.85372 -11.61228 -11.24921 -10.98947 -10.69457 -10.46444 -9.86376 -9.73183 -8.27306 -6.38067 -0.02609 0.06027 1.33477 1.38028 1.38759 1.52686 1.81606 2.36808 2.66209 2.98934 3.05502 3.09802 3.35137 3.48687 3.73568 3.99663 4.07743 4.10309 4.20630 4.29102 4.42035 4.42754 4.45035 4.60576 4.65616 4.79894 4.80164 4.85137 4.93852 5.01701 5.10625 5.23441 5.45291 5.65478 5.69977 5.92143 6.01907 6.19680 6.29229 6.75904 6.96838 7.31811 8.84740 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.023279 B = 0.003359 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.530117 B = 8332.783000 C = 8939.489986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.068 3.932 3 O -0.311 6.311 4 C 0.523 3.477 5 N -0.591 5.591 6 C 0.218 3.782 7 C -0.278 4.278 8 C 0.379 3.621 9 O -0.290 6.290 10 C 0.073 3.927 11 C 0.010 3.990 12 N -0.486 5.486 13 C 0.178 3.822 14 C -0.532 4.532 15 H 0.058 0.942 16 C 0.004 3.996 17 N -0.931 5.931 18 Si 0.971 3.029 19 H -0.266 1.266 20 H -0.275 1.275 21 H -0.275 1.275 22 C 0.007 3.993 23 N -0.611 5.611 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.109 0.891 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.229 0.771 30 H 0.181 0.819 31 H 0.124 0.876 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.010 0.990 35 H -0.021 1.021 36 H 0.267 0.733 37 H 0.112 0.888 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.627 -25.041 5.917 26.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.007 4.007 3 O -0.213 6.213 4 C 0.220 3.780 5 N -0.326 5.326 6 C 0.057 3.943 7 C -0.301 4.301 8 C 0.193 3.807 9 O -0.194 6.194 10 C 0.016 3.984 11 C -0.119 4.119 12 N -0.211 5.211 13 C 0.051 3.949 14 C -0.570 4.570 15 H 0.077 0.923 16 C -0.194 4.194 17 N -0.571 5.571 18 Si 0.795 3.205 19 H -0.190 1.190 20 H -0.201 1.201 21 H -0.201 1.201 22 C -0.122 4.122 23 N -0.354 5.354 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.128 0.872 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.245 0.755 30 H 0.199 0.801 31 H 0.142 0.858 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.029 0.971 35 H -0.003 1.003 36 H 0.076 0.924 37 H 0.130 0.870 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.097 -24.395 5.982 25.847 hybrid contribution 1.458 0.807 -0.916 1.902 sum -4.639 -23.588 5.066 24.568 Atomic orbital electron populations 1.21879 0.90923 1.04631 1.03228 1.23015 0.96123 0.78217 1.03370 1.86078 1.14745 1.33847 1.86606 1.20322 0.86049 0.84075 0.87516 1.68244 1.07692 1.32028 1.24657 1.23607 0.88918 0.97481 0.84322 1.22200 1.03463 0.90835 1.13588 1.20237 0.87029 0.86910 0.86485 1.86403 1.35812 1.11640 1.85502 1.24585 0.93851 0.82810 0.97126 1.24179 1.01706 0.90072 0.95906 1.68521 1.43053 1.04412 1.05093 1.19890 0.89891 0.90009 0.95070 1.21408 1.09398 1.18444 1.07755 0.92331 1.25915 0.95159 0.96701 1.01666 1.70078 1.18434 1.27224 1.41353 0.85308 0.78521 0.78196 0.78445 1.19024 1.20052 1.20059 1.24297 0.99505 0.90173 0.98175 1.66838 1.15468 1.25539 1.27529 0.91796 0.92015 0.87223 0.90767 0.90520 0.75453 0.80110 0.85822 0.91985 0.89679 0.97144 1.00289 0.92439 0.86968 0.90944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 10.28 71.98 0.74 -1.10 16 2 C 0.07 1.15 6.01 71.98 0.43 1.58 16 3 O -0.31 -8.19 10.19 -87.56 -0.89 -9.09 16 4 C 0.52 14.53 8.49 180.58 1.53 16.07 16 5 N -0.59 -12.89 9.22 -313.68 -2.89 -15.78 16 6 C 0.22 3.43 11.29 84.60 0.95 4.39 16 7 C -0.28 -5.49 10.12 22.54 0.23 -5.26 16 8 C 0.38 10.91 7.53 84.82 0.64 11.55 16 9 O -0.29 -9.39 10.15 -88.11 -0.89 -10.29 16 10 C 0.07 2.57 4.34 31.24 0.14 2.70 16 11 C 0.01 0.44 7.32 86.37 0.63 1.07 16 12 N -0.49 -22.30 6.25 -915.61 -5.72 -28.02 16 13 C 0.18 9.80 4.58 85.55 0.39 10.19 16 14 C -0.53 -31.16 8.84 25.60 0.23 -30.93 16 15 H 0.06 3.41 7.80 -2.91 -0.02 3.39 16 16 C 0.00 0.24 5.46 84.65 0.46 0.70 16 17 N -0.93 -56.53 13.29 21.44 0.28 -56.24 16 18 Si 0.97 45.08 29.54 68.60 2.03 47.11 16 19 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 20 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 21 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 22 C 0.01 0.26 7.81 86.41 0.67 0.94 16 23 N -0.61 -19.25 8.80 -426.37 -3.75 -23.00 16 24 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.07 1.17 8.09 -2.39 -0.02 1.15 16 28 H 0.08 1.17 8.09 -2.38 -0.02 1.15 16 29 H 0.23 1.13 8.06 -2.91 -0.02 1.10 16 30 H 0.18 2.57 8.06 -2.91 -0.02 2.55 16 31 H 0.12 4.34 6.96 -2.39 -0.02 4.32 16 32 H 0.06 2.73 7.79 -2.38 -0.02 2.71 16 33 H 0.08 3.48 8.14 -2.39 -0.02 3.46 16 34 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 35 H -0.02 -1.20 7.70 -2.39 -0.02 -1.22 16 36 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 37 H 0.11 3.61 8.14 -2.39 -0.02 3.59 16 38 H 0.07 2.71 7.79 -2.39 -0.02 2.69 16 Total: -1.00 -72.07 328.33 -3.74 -75.81 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: 1.05 Total: 7.61 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: 7.05 Total: 11.89 kcal Atomic # 7 Polarization: -110.96 SS G_CDS: -12.08 Total: -123.05 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -1.79 Total: -19.37 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -72.07 -3.74 -75.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234437097.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.595 kcal (2) G-P(sol) polarization free energy of solvation -72.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds