Wall clock time and date at job start Tue Mar 31 2020 00:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42897 * 109.46879 * 2 1 4 4 C 1.35962 * 116.99498 * 179.97438 * 3 2 1 5 5 C 1.38655 * 120.06471 * 0.23696 * 4 3 2 6 6 C 1.38180 * 119.96948 * 180.27203 * 5 4 3 7 7 C 1.50702 * 119.95591 * 179.76501 * 6 5 4 8 8 N 1.46902 * 109.47215 * 269.72835 * 7 6 5 9 9 C 1.47961 * 111.00005 * 169.99576 * 8 7 6 10 10 C 1.53934 * 86.17939 * 137.58072 * 9 8 7 11 11 C 1.50703 * 113.73399 * 221.81705 * 10 9 8 12 12 H 1.07999 * 119.99920 * 358.09577 * 11 10 9 13 13 C 1.37877 * 119.99669 * 178.10223 * 11 10 9 14 14 N 1.31510 * 120.00506 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99624 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47263 * 89.99888 * 15 13 11 17 17 H 1.48497 * 109.47123 * 209.99934 * 15 13 11 18 18 H 1.48502 * 109.47383 * 330.00011 * 15 13 11 19 19 C 1.48296 * 111.00409 * 269.34877 * 8 7 6 20 20 C 1.38264 * 120.09622 * 359.49479 * 6 5 4 21 21 C 1.38258 * 120.12312 * 0.24584 * 20 6 5 22 22 C 1.38334 * 120.02899 * 0.02562 * 21 20 6 23 23 F 1.35105 * 120.04403 * 180.02562 * 22 21 20 24 24 H 1.09006 * 109.47000 * 59.99758 * 1 2 3 25 25 H 1.08994 * 109.46925 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46858 * 299.99926 * 1 2 3 27 27 H 1.09001 * 109.46858 * 240.00073 * 2 1 3 28 28 H 1.08992 * 109.46941 * 120.00388 * 2 1 3 29 29 H 1.08004 * 120.01764 * 0.04420 * 5 4 3 30 30 H 1.09001 * 109.47251 * 149.72410 * 7 6 5 31 31 H 1.09004 * 109.46551 * 29.72777 * 7 6 5 32 32 H 1.09007 * 113.75652 * 23.26342 * 9 8 7 33 33 H 1.08993 * 113.76177 * 251.90248 * 9 8 7 34 34 H 1.09002 * 113.73279 * 90.64057 * 10 9 8 35 35 H 0.96995 * 120.00309 * 180.02562 * 14 13 11 36 36 H 1.09001 * 113.86054 * 108.14174 * 19 8 7 37 37 H 1.09000 * 113.76062 * 336.68481 * 19 8 7 38 38 H 1.07994 * 119.93990 * 180.23556 * 20 6 5 39 39 H 1.07999 * 119.98287 * 179.97438 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3542 1.5253 0.0005 5 6 4.2000 0.4267 -0.0039 6 6 5.5696 0.6099 0.0023 7 6 6.4886 -0.5845 0.0029 8 7 6.7867 -0.9724 1.3880 9 6 7.4864 -2.2753 1.4349 10 6 8.3906 -1.6348 2.5034 11 6 9.8501 -1.9757 2.3465 12 1 10.1675 -2.6407 1.5569 13 6 10.7802 -1.4388 3.2112 14 7 10.3938 -0.6296 4.1731 15 14 12.5893 -1.8620 3.0172 16 1 13.2330 -0.8791 2.1090 17 1 13.2531 -1.8179 4.3448 18 1 12.7200 -3.2255 2.4434 19 6 8.0007 -0.2804 1.8844 20 6 6.0982 1.8875 0.0025 21 6 5.2585 2.9859 0.0015 22 6 3.8866 2.8084 0.0009 23 9 3.0657 3.8814 -0.0006 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.7886 -0.5719 -0.0085 30 1 7.4158 -0.3298 -0.5107 31 1 6.0050 -1.4152 -0.5111 32 1 8.0081 -2.5270 0.5116 33 1 6.8704 -3.0913 1.8127 34 1 8.0296 -1.7714 3.5228 35 1 11.0482 -0.2515 4.7811 36 1 7.7954 0.4964 2.6210 37 1 8.6726 0.0501 1.0923 38 1 7.1690 2.0278 0.0035 39 1 5.6738 3.9828 0.0020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235796867.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:36 Heat of formation + Delta-G solvation = -30.828771 kcal Electronic energy + Delta-G solvation = -21198.630790 eV Core-core repulsion = 17828.903829 eV Total energy + Delta-G solvation = -3369.726961 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.67550 -40.12828 -38.83067 -37.41556 -33.00703 -32.17699 -31.55422 -29.81973 -28.20089 -25.58074 -25.01338 -24.18827 -22.76235 -21.89134 -20.97884 -18.62226 -18.13286 -17.05475 -16.66674 -16.55578 -16.39535 -15.26877 -14.94156 -14.85978 -14.38531 -14.27790 -14.08421 -13.90441 -13.29010 -13.19848 -12.92158 -12.73347 -12.15465 -12.04387 -11.71140 -11.67686 -11.50002 -11.28888 -11.04083 -10.91946 -10.85104 -10.61217 -10.33254 -9.80115 -9.32021 -9.06482 -8.73520 -8.48218 -8.08629 -7.94054 -6.08318 -4.13445 1.19673 1.34253 2.99295 3.25929 3.33596 3.36064 3.62051 4.29408 4.37368 4.63562 4.72658 4.78062 4.87197 4.99999 5.05299 5.20544 5.22447 5.28285 5.36187 5.51317 5.56882 5.62114 5.80141 5.82990 6.01987 6.08198 6.11383 6.26062 6.34042 6.41528 6.58709 6.62291 6.70837 6.73753 7.11564 7.15822 7.29624 7.68944 7.86271 8.00772 8.32417 8.89154 9.51855 11.00971 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.027165 B = 0.003578 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.480075 B = 7824.771160 C = 8452.229405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.053 3.947 3 O -0.312 6.312 4 C 0.095 3.905 5 C -0.167 4.167 6 C -0.027 4.027 7 C 0.054 3.946 8 N -0.486 5.486 9 C -0.002 4.002 10 C 0.039 3.961 11 C -0.520 4.520 12 H 0.057 0.943 13 C 0.067 3.933 14 N -0.885 5.885 15 Si 0.890 3.110 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.014 3.986 20 C -0.119 4.119 21 C -0.115 4.115 22 C 0.056 3.944 23 F -0.139 7.139 24 H 0.065 0.935 25 H 0.078 0.922 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.135 0.865 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.262 0.738 36 H 0.068 0.932 37 H 0.055 0.945 38 H 0.133 0.867 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.375 2.800 -9.780 17.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.227 6.227 4 C 0.049 3.951 5 C -0.186 4.186 6 C -0.028 4.028 7 C -0.074 4.074 8 N -0.209 5.209 9 C -0.131 4.131 10 C 0.020 3.980 11 C -0.558 4.558 12 H 0.075 0.925 13 C -0.136 4.136 14 N -0.522 5.522 15 Si 0.718 3.282 16 H -0.207 1.207 17 H -0.211 1.211 18 H -0.198 1.198 19 C -0.114 4.114 20 C -0.137 4.137 21 C -0.133 4.133 22 C 0.036 3.964 23 F -0.118 7.118 24 H 0.084 0.916 25 H 0.097 0.903 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.153 0.847 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.151 0.849 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -15.135 3.160 -9.299 18.043 hybrid contribution 1.677 -0.180 -0.559 1.777 sum -13.458 2.979 -9.859 16.947 Atomic orbital electron populations 1.21767 0.92712 1.02832 1.03470 1.22828 0.95836 0.81782 1.01794 1.86095 1.18108 1.29541 1.88921 1.18892 0.83215 0.92834 1.00143 1.20971 0.93351 0.97545 1.06718 1.19727 0.93115 0.94981 0.94959 1.21633 0.97208 0.94434 0.94104 1.68629 1.31932 1.05343 1.14951 1.24094 0.96148 0.92205 1.00607 1.20302 0.93787 0.89670 0.94240 1.21084 0.91219 1.28898 1.14636 0.92451 1.25010 0.98906 0.94877 0.94815 1.69961 1.34192 1.31012 1.17084 0.86630 0.85238 0.78873 0.77474 1.20657 1.21145 1.19848 1.24195 0.88063 1.00471 0.98691 1.20898 1.00244 0.91088 1.01510 1.20954 0.90298 1.00684 1.01402 1.16929 0.87947 0.80821 1.10720 1.91464 1.72154 1.53587 1.94546 0.91631 0.90290 0.91482 0.91939 0.91554 0.84706 0.92877 0.90982 0.92586 0.91555 0.92327 0.92836 0.91355 0.92638 0.84879 0.84259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 10.28 37.16 0.38 -0.78 16 2 C 0.05 0.53 5.46 37.16 0.20 0.73 16 3 O -0.31 -4.30 10.00 -19.62 -0.20 -4.50 16 4 C 0.10 1.39 6.69 -39.18 -0.26 1.13 16 5 C -0.17 -2.35 8.69 -39.45 -0.34 -2.69 16 6 C -0.03 -0.41 5.44 -104.63 -0.57 -0.97 16 7 C 0.05 0.87 4.92 -4.97 -0.02 0.84 16 8 N -0.49 -9.39 6.15 -239.48 -1.47 -10.86 16 9 C 0.00 -0.04 7.50 -2.76 -0.02 -0.06 16 10 C 0.04 0.95 3.60 -90.84 -0.33 0.62 16 11 C -0.52 -13.80 8.77 -34.44 -0.30 -14.10 16 12 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 13 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 14 N -0.89 -25.09 13.29 55.43 0.74 -24.36 16 15 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 19 C 0.01 0.32 7.53 -2.57 -0.02 0.30 16 20 C -0.12 -1.71 9.69 -39.56 -0.38 -2.09 16 21 C -0.11 -1.56 10.02 -39.54 -0.40 -1.95 16 22 C 0.06 0.83 7.31 -39.30 -0.29 0.54 16 23 F -0.14 -2.14 17.11 2.25 0.04 -2.10 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.55 7.65 -51.93 -0.40 0.15 16 28 H 0.07 0.65 7.67 -51.93 -0.40 0.25 16 29 H 0.14 1.67 6.30 -52.48 -0.33 1.34 16 30 H 0.05 0.84 7.33 -51.93 -0.38 0.46 16 31 H 0.07 1.03 8.02 -51.93 -0.42 0.61 16 32 H 0.06 1.08 7.88 -51.92 -0.41 0.68 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.06 1.58 8.14 -51.93 -0.42 1.15 16 35 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 36 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 37 H 0.06 1.22 7.43 -51.93 -0.39 0.84 16 38 H 0.13 1.82 8.06 -52.49 -0.42 1.40 16 39 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 332.15 15.07 5.01 5.01 Total: -1.00 -29.02 332.15 -9.00 -38.02 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -5.65 Total: -0.09 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: -2.45 Total: -16.77 kcal Atomic # 7 Polarization: -34.48 SS G_CDS: -0.74 Total: -35.22 kcal Atomic # 8 Polarization: -4.30 SS G_CDS: -0.20 Total: -4.50 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.04 Total: -2.10 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.02 -9.00 -38.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235796867.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.191 kcal (2) G-P(sol) polarization free energy of solvation -29.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds