Wall clock time and date at job start Tue Mar 31 2020 00:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42897 * 109.46879 * 2 1 4 4 C 1.35962 * 116.99498 * 179.97438 * 3 2 1 5 5 C 1.38655 * 120.06471 * 0.23696 * 4 3 2 6 6 C 1.38180 * 119.96948 * 180.27203 * 5 4 3 7 7 C 1.50702 * 119.95591 * 179.76501 * 6 5 4 8 8 N 1.46902 * 109.47215 * 269.72835 * 7 6 5 9 9 C 1.47961 * 111.00005 * 169.99576 * 8 7 6 10 10 C 1.53934 * 86.17939 * 137.58072 * 9 8 7 11 11 C 1.50703 * 113.73399 * 221.81705 * 10 9 8 12 12 H 1.07999 * 119.99920 * 358.09577 * 11 10 9 13 13 C 1.37877 * 119.99669 * 178.10223 * 11 10 9 14 14 N 1.31510 * 120.00506 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99624 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47263 * 89.99888 * 15 13 11 17 17 H 1.48497 * 109.47123 * 209.99934 * 15 13 11 18 18 H 1.48502 * 109.47383 * 330.00011 * 15 13 11 19 19 C 1.48296 * 111.00409 * 269.34877 * 8 7 6 20 20 C 1.38264 * 120.09622 * 359.49479 * 6 5 4 21 21 C 1.38258 * 120.12312 * 0.24584 * 20 6 5 22 22 C 1.38334 * 120.02899 * 0.02562 * 21 20 6 23 23 F 1.35105 * 120.04403 * 180.02562 * 22 21 20 24 24 H 1.09006 * 109.47000 * 59.99758 * 1 2 3 25 25 H 1.08994 * 109.46925 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46858 * 299.99926 * 1 2 3 27 27 H 1.09001 * 109.46858 * 240.00073 * 2 1 3 28 28 H 1.08992 * 109.46941 * 120.00388 * 2 1 3 29 29 H 1.08004 * 120.01764 * 0.04420 * 5 4 3 30 30 H 1.09001 * 109.47251 * 149.72410 * 7 6 5 31 31 H 1.09004 * 109.46551 * 29.72777 * 7 6 5 32 32 H 1.09007 * 113.75652 * 23.26342 * 9 8 7 33 33 H 1.08993 * 113.76177 * 251.90248 * 9 8 7 34 34 H 1.09002 * 113.73279 * 90.64057 * 10 9 8 35 35 H 0.96995 * 120.00309 * 180.02562 * 14 13 11 36 36 H 1.09001 * 113.86054 * 108.14174 * 19 8 7 37 37 H 1.09000 * 113.76062 * 336.68481 * 19 8 7 38 38 H 1.07994 * 119.93990 * 180.23556 * 20 6 5 39 39 H 1.07999 * 119.98287 * 179.97438 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3542 1.5253 0.0005 5 6 4.2000 0.4267 -0.0039 6 6 5.5696 0.6099 0.0023 7 6 6.4886 -0.5845 0.0029 8 7 6.7867 -0.9724 1.3880 9 6 7.4864 -2.2753 1.4349 10 6 8.3906 -1.6348 2.5034 11 6 9.8501 -1.9757 2.3465 12 1 10.1675 -2.6407 1.5569 13 6 10.7802 -1.4388 3.2112 14 7 10.3938 -0.6296 4.1731 15 14 12.5893 -1.8620 3.0172 16 1 13.2330 -0.8791 2.1090 17 1 13.2531 -1.8179 4.3448 18 1 12.7200 -3.2255 2.4434 19 6 8.0007 -0.2804 1.8844 20 6 6.0982 1.8875 0.0025 21 6 5.2585 2.9859 0.0015 22 6 3.8866 2.8084 0.0009 23 9 3.0657 3.8814 -0.0006 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.7886 -0.5719 -0.0085 30 1 7.4158 -0.3298 -0.5107 31 1 6.0050 -1.4152 -0.5111 32 1 8.0081 -2.5270 0.5116 33 1 6.8704 -3.0913 1.8127 34 1 8.0296 -1.7714 3.5228 35 1 11.0482 -0.2515 4.7811 36 1 7.7954 0.4964 2.6210 37 1 8.6726 0.0501 1.0923 38 1 7.1690 2.0278 0.0035 39 1 5.6738 3.9828 0.0020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235796867.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:36 Heat of formation + Delta-G solvation = -47.931614 kcal Electronic energy + Delta-G solvation = -21199.372425 eV Core-core repulsion = 17828.903829 eV Total energy + Delta-G solvation = -3370.468596 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.83694 -41.23925 -40.32249 -38.55680 -34.82161 -33.36821 -32.60883 -30.92275 -29.71021 -27.25391 -26.67995 -25.17823 -24.26532 -22.82551 -22.21865 -20.40258 -19.24812 -18.57184 -18.03375 -17.77534 -17.35959 -16.71805 -16.37831 -16.30486 -15.80680 -15.68874 -15.42720 -14.94710 -14.65413 -14.17556 -14.06852 -13.82618 -13.45312 -13.37898 -13.22269 -12.98743 -12.80362 -12.71766 -12.52781 -12.36088 -12.12197 -11.88160 -11.71094 -11.53929 -11.12902 -10.91455 -10.50973 -9.85626 -9.58827 -9.18361 -8.13078 -6.24603 0.06738 0.24779 1.43336 1.44922 1.54677 2.07649 2.42843 2.49580 3.16786 3.20106 3.34957 3.61057 3.77627 4.03590 4.05500 4.08152 4.20736 4.30570 4.34510 4.36939 4.45181 4.54537 4.66079 4.78500 4.83866 4.88934 4.92462 4.95317 4.97413 5.02167 5.16641 5.21829 5.28735 5.40254 5.63683 5.65608 5.66152 5.87637 6.28313 6.31573 6.38193 6.84905 7.44171 8.96118 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.027165 B = 0.003578 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.480075 B = 7824.771160 C = 8452.229405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.042 3.958 3 O -0.328 6.328 4 C 0.090 3.910 5 C -0.165 4.165 6 C -0.039 4.039 7 C 0.057 3.943 8 N -0.484 5.484 9 C 0.014 3.986 10 C 0.017 3.983 11 C -0.531 4.531 12 H 0.061 0.939 13 C 0.015 3.985 14 N -0.921 5.921 15 Si 0.955 3.045 16 H -0.274 1.274 17 H -0.287 1.287 18 H -0.265 1.265 19 C 0.028 3.972 20 C -0.127 4.127 21 C -0.110 4.110 22 C 0.037 3.963 23 F -0.145 7.145 24 H 0.065 0.935 25 H 0.103 0.897 26 H 0.060 0.940 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.153 0.847 30 H 0.056 0.944 31 H 0.096 0.904 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.022 0.978 35 H 0.262 0.738 36 H 0.046 0.954 37 H 0.055 0.945 38 H 0.137 0.863 39 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.669 1.966 -11.242 18.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.032 4.032 3 O -0.243 6.243 4 C 0.044 3.956 5 C -0.184 4.184 6 C -0.040 4.040 7 C -0.071 4.071 8 N -0.207 5.207 9 C -0.114 4.114 10 C -0.002 4.002 11 C -0.570 4.570 12 H 0.079 0.921 13 C -0.184 4.184 14 N -0.560 5.560 15 Si 0.780 3.220 16 H -0.200 1.200 17 H -0.213 1.213 18 H -0.189 1.189 19 C -0.101 4.101 20 C -0.146 4.146 21 C -0.128 4.128 22 C 0.017 3.983 23 F -0.124 7.124 24 H 0.084 0.916 25 H 0.121 0.879 26 H 0.079 0.921 27 H 0.095 0.905 28 H 0.086 0.914 29 H 0.170 0.830 30 H 0.074 0.926 31 H 0.114 0.886 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.040 0.960 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.155 0.845 39 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -15.445 2.311 -10.779 18.976 hybrid contribution 1.671 0.067 -0.110 1.676 sum -13.775 2.378 -10.889 17.719 Atomic orbital electron populations 1.21805 0.91071 1.04349 1.03206 1.23154 0.97201 0.80304 1.02539 1.86097 1.17587 1.31882 1.88738 1.19024 0.83858 0.92884 0.99821 1.21104 0.92882 0.98264 1.06117 1.19744 0.93450 0.94859 0.95925 1.21657 0.97792 0.95707 0.91946 1.68535 1.30115 1.04386 1.17633 1.23954 0.95272 0.92774 0.99391 1.20300 0.93747 0.92363 0.93782 1.21448 0.92510 1.28507 1.14495 0.92114 1.25802 1.03201 0.94844 0.94596 1.70091 1.35497 1.32345 1.18089 0.85605 0.80072 0.78965 0.77311 1.20013 1.21257 1.18946 1.23884 0.89355 0.98765 0.98115 1.21031 1.00621 0.91267 1.01699 1.21155 0.89788 1.01595 1.00276 1.17227 0.88477 0.81009 1.11565 1.91442 1.72392 1.53880 1.94684 0.91585 0.87851 0.92062 0.90500 0.91400 0.82967 0.92625 0.88607 0.91353 0.90105 0.95980 0.92951 0.93548 0.92671 0.84492 0.82151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 10.28 71.98 0.74 -1.26 16 2 C 0.04 0.77 5.46 71.98 0.39 1.16 16 3 O -0.33 -8.68 10.00 -93.13 -0.93 -9.61 16 4 C 0.09 2.54 6.69 22.53 0.15 2.69 16 5 C -0.16 -4.34 8.69 22.36 0.19 -4.14 16 6 C -0.04 -1.11 5.44 -19.87 -0.11 -1.22 16 7 C 0.06 1.68 4.92 85.56 0.42 2.10 16 8 N -0.48 -18.09 6.15 -911.59 -5.61 -23.70 16 9 C 0.01 0.56 7.50 86.41 0.65 1.20 16 10 C 0.02 0.84 3.60 -10.89 -0.04 0.80 16 11 C -0.53 -28.16 8.77 25.60 0.22 -27.93 16 12 H 0.06 3.10 7.81 -2.91 -0.02 3.08 16 13 C 0.01 0.81 5.46 84.66 0.46 1.27 16 14 N -0.92 -53.22 13.29 21.45 0.28 -52.94 16 15 Si 0.95 42.29 29.54 68.60 2.03 44.32 16 16 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 17 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 18 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 19 C 0.03 1.24 7.53 86.34 0.65 1.89 16 20 C -0.13 -3.52 9.69 22.28 0.22 -3.31 16 21 C -0.11 -2.86 10.02 22.30 0.22 -2.64 16 22 C 0.04 1.08 7.31 22.45 0.16 1.24 16 23 F -0.15 -4.40 17.11 44.97 0.77 -3.63 16 24 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 25 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.08 1.17 7.65 -2.39 -0.02 1.15 16 28 H 0.07 1.21 7.67 -2.39 -0.02 1.19 16 29 H 0.15 3.37 6.30 -2.91 -0.02 3.35 16 30 H 0.06 1.65 7.33 -2.39 -0.02 1.63 16 31 H 0.10 2.40 8.02 -2.39 -0.02 2.38 16 32 H 0.07 2.47 7.88 -2.38 -0.02 2.45 16 33 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 34 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 36 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.06 2.42 7.43 -2.39 -0.02 2.41 16 38 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 39 H 0.16 3.37 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -62.14 332.15 1.92 -60.22 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: 1.04 Total: 13.48 kcal Atomic # 6 Polarization: -32.48 SS G_CDS: 4.34 Total: -28.13 kcal Atomic # 7 Polarization: -71.31 SS G_CDS: -5.32 Total: -76.63 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: -0.93 Total: -9.61 kcal Atomic # 9 Polarization: -4.40 SS G_CDS: 0.77 Total: -3.63 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -62.14 1.92 -60.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235796867.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.287 kcal (2) G-P(sol) polarization free energy of solvation -62.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds