Wall clock time and date at job start Tue Mar 31 2020 01:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46906 * 110.99728 * 2 1 4 4 C 1.50699 * 109.47140 * 66.04805 * 3 2 1 5 5 H 1.08003 * 119.99962 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99861 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99892 * 180.02562 * 6 4 3 8 8 Si 1.86805 * 120.00241 * 359.97438 * 6 4 3 9 9 H 1.48499 * 109.47135 * 90.00125 * 8 6 4 10 10 H 1.48503 * 109.47215 * 210.00315 * 8 6 4 11 11 H 1.48508 * 109.46958 * 330.00276 * 8 6 4 12 12 C 1.46905 * 110.99850 * 236.04849 * 2 1 3 13 13 C 1.50694 * 109.47033 * 293.95020 * 12 2 1 14 14 C 1.38016 * 119.87946 * 260.00359 * 13 12 2 15 15 C 1.38433 * 119.93318 * 179.97438 * 14 13 12 16 16 F 1.35099 * 120.03378 * 180.02562 * 15 14 13 17 17 C 1.38327 * 119.93065 * 0.08976 * 15 14 13 18 18 C 1.38475 * 120.29797 * 0.02562 * 17 15 14 19 19 C 1.38397 * 119.84844 * 359.53562 * 18 17 15 20 20 O 1.35898 * 121.78185 * 180.78226 * 19 18 17 21 21 C 1.42827 * 117.84533 * 342.75107 * 20 19 18 22 22 C 1.53403 * 108.37310 * 49.29605 * 21 20 19 23 23 C 1.50767 * 118.74626 * 179.53261 * 18 17 15 24 24 H 1.08996 * 109.47030 * 59.99921 * 1 2 3 25 25 H 1.08999 * 109.46702 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46890 * 299.99929 * 1 2 3 27 27 H 1.09004 * 109.47040 * 186.04743 * 3 2 1 28 28 H 1.09000 * 109.47033 * 306.04695 * 3 2 1 29 29 H 0.97002 * 119.99998 * 180.02562 * 7 6 4 30 30 H 1.08997 * 109.46807 * 53.95411 * 12 2 1 31 31 H 1.09000 * 109.46636 * 173.95277 * 12 2 1 32 32 H 1.08003 * 120.03085 * 359.93425 * 14 13 12 33 33 H 1.08004 * 119.84944 * 179.97438 * 17 15 14 34 34 H 1.08998 * 109.68228 * 169.01372 * 21 20 19 35 35 H 1.09000 * 109.68346 * 289.53574 * 21 20 19 36 36 H 1.08997 * 109.69918 * 55.01746 * 22 21 20 37 37 H 1.09009 * 109.69592 * 175.56651 * 22 21 20 38 38 H 1.09001 * 109.43574 * 282.35684 * 23 18 17 39 39 H 1.09005 * 109.43422 * 42.21526 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0739 1.5115 2.0485 6 6 2.0267 3.3495 1.5284 7 7 1.7143 3.9390 2.6618 8 14 2.9998 4.2763 0.2309 9 1 2.0631 4.9799 -0.6817 10 1 3.8862 5.2680 0.8913 11 1 3.8238 3.3176 -0.5485 12 6 1.9954 -0.7660 -1.1377 13 6 1.6370 -2.2204 -0.9729 14 6 2.5754 -3.1092 -0.4891 15 6 2.2471 -4.4454 -0.3368 16 9 3.1640 -5.3172 0.1371 17 6 0.9798 -4.8873 -0.6716 18 6 0.0364 -3.9988 -1.1597 19 6 0.3600 -2.6610 -1.3040 20 8 -0.5399 -1.7525 -1.7641 21 6 -1.6947 -2.2439 -2.4459 22 6 -2.3239 -3.3533 -1.5936 23 6 -1.3306 -4.5202 -1.5237 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 3.0797 1.3445 -0.1083 28 1 1.5610 1.9274 -0.8309 29 1 1.9882 4.8554 2.8235 30 1 1.5611 -0.3871 -2.0628 31 1 3.0797 -0.6610 -1.1757 32 1 3.5650 -2.7628 -0.2301 33 1 0.7253 -5.9302 -0.5527 34 1 -2.4121 -1.4348 -2.5830 35 1 -1.4046 -2.6457 -3.4168 36 1 -2.5287 -2.9757 -0.5919 37 1 -3.2518 -3.6903 -2.0560 38 1 -1.2810 -5.0259 -2.4880 39 1 -1.6646 -5.2250 -0.7621 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236616664.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:15 Heat of formation + Delta-G solvation = -51.350214 kcal Electronic energy + Delta-G solvation = -22114.641927 eV Core-core repulsion = 18744.025090 eV Total energy + Delta-G solvation = -3370.616838 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.73998 -40.87834 -37.54518 -36.56448 -34.31825 -32.43529 -31.00934 -30.21169 -27.77810 -26.64254 -25.80864 -23.95379 -23.65313 -21.30712 -20.24287 -19.88719 -17.82266 -17.32944 -16.84854 -16.64509 -15.82596 -15.32688 -15.00316 -14.69715 -14.38452 -14.33932 -14.11433 -13.98694 -13.39044 -13.16549 -13.00006 -12.91626 -12.40961 -12.21405 -11.89725 -11.61198 -11.32587 -11.13896 -11.07279 -10.95155 -10.70299 -10.58796 -10.48952 -9.95400 -9.79998 -9.24014 -8.79397 -8.53515 -7.98423 -7.28120 -6.01046 -3.97809 1.17087 1.25881 3.27196 3.30832 3.38309 3.40550 3.53662 4.21793 4.45462 4.45492 4.54432 4.56346 4.74001 4.96684 5.06394 5.11103 5.19604 5.30016 5.31339 5.35194 5.43143 5.57163 5.67282 5.76112 5.85012 5.87508 6.10802 6.16710 6.20516 6.35670 6.43261 6.55885 6.77898 6.86768 6.95228 7.07454 7.41591 7.64526 7.96795 8.11895 8.71215 9.08361 9.60815 11.12243 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.020096 B = 0.004940 C = 0.004296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.978425 B = 5666.179332 C = 6516.776327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.525 5.525 3 C 0.162 3.838 4 C -0.506 4.506 5 H 0.080 0.920 6 C 0.068 3.932 7 N -0.902 5.902 8 Si 0.875 3.125 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.267 1.267 12 C 0.095 3.905 13 C -0.062 4.062 14 C -0.106 4.106 15 C 0.065 3.935 16 F -0.144 7.144 17 C -0.128 4.128 18 C -0.137 4.137 19 C 0.129 3.871 20 O -0.296 6.296 21 C 0.053 3.947 22 C -0.159 4.159 23 C -0.075 4.075 24 H 0.015 0.985 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.027 0.973 28 H -0.016 1.016 29 H 0.263 0.737 30 H 0.040 0.960 31 H 0.077 0.923 32 H 0.142 0.858 33 H 0.132 0.868 34 H 0.107 0.893 35 H 0.061 0.939 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.825 -17.775 -12.022 22.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.249 5.249 3 C 0.035 3.965 4 C -0.544 4.544 5 H 0.098 0.902 6 C -0.134 4.134 7 N -0.541 5.541 8 Si 0.703 3.297 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.192 1.192 12 C -0.033 4.033 13 C -0.063 4.063 14 C -0.126 4.126 15 C 0.046 3.954 16 F -0.123 7.123 17 C -0.147 4.147 18 C -0.138 4.138 19 C 0.083 3.917 20 O -0.209 6.209 21 C -0.022 4.022 22 C -0.197 4.197 23 C -0.112 4.112 24 H 0.033 0.967 25 H 0.080 0.920 26 H 0.088 0.912 27 H 0.045 0.955 28 H 0.002 0.998 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.095 0.905 32 H 0.160 0.840 33 H 0.150 0.850 34 H 0.125 0.875 35 H 0.079 0.921 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.608 -17.631 -11.460 21.763 hybrid contribution 0.306 0.621 -1.238 1.419 sum -5.301 -17.009 -12.698 21.878 Atomic orbital electron populations 1.22420 0.87620 1.00482 1.00328 1.62068 1.08093 1.16025 1.38665 1.20216 0.95123 0.84065 0.97061 1.21037 1.35326 0.97140 1.00895 0.90151 1.24893 0.95815 0.97342 0.95316 1.69897 1.47092 1.13194 1.23925 0.86865 0.80643 0.80047 0.82186 1.20399 1.21189 1.19182 1.20929 1.00144 0.88391 0.93850 1.19336 0.90112 0.96835 1.00013 1.20861 1.01055 0.90769 0.99866 1.17433 0.87463 0.87547 1.02948 1.91470 1.65643 1.68771 1.86389 1.20724 0.91807 1.00226 1.01914 1.19518 0.96830 0.92462 1.04999 1.18446 0.89023 0.87710 0.96480 1.86418 1.31908 1.32547 1.70061 1.22984 0.86735 0.98134 0.94356 1.22291 0.98898 0.96288 1.02204 1.20507 0.90513 0.97846 1.02308 0.96678 0.92016 0.91185 0.95467 0.99824 0.92726 0.94159 0.90458 0.84014 0.84994 0.87507 0.92088 0.89999 0.89868 0.90344 0.90010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.81 7.86 60.06 0.47 1.28 16 2 N -0.52 -11.46 4.74 -245.82 -1.17 -12.62 16 3 C 0.16 4.02 3.79 -4.97 -0.02 4.00 16 4 C -0.51 -14.66 9.07 -34.44 -0.31 -14.98 16 5 H 0.08 2.55 7.35 -52.48 -0.39 2.16 16 6 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 7 N -0.90 -27.97 13.96 55.43 0.77 -27.20 16 8 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 11 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 12 C 0.09 1.70 4.98 -4.98 -0.02 1.67 16 13 C -0.06 -0.98 5.18 -104.39 -0.54 -1.52 16 14 C -0.11 -1.57 9.64 -39.59 -0.38 -1.96 16 15 C 0.07 0.91 7.30 -39.48 -0.29 0.62 16 16 F -0.14 -2.03 17.27 2.25 0.04 -1.99 16 17 C -0.13 -1.55 9.64 -39.46 -0.38 -1.93 16 18 C -0.14 -1.67 5.75 -104.44 -0.60 -2.27 16 19 C 0.13 1.86 5.25 -39.21 -0.21 1.66 16 20 O -0.30 -4.14 6.08 -19.42 -0.12 -4.26 16 21 C 0.05 0.51 7.02 37.37 0.26 0.77 16 22 C -0.16 -1.32 6.22 -26.32 -0.16 -1.48 16 23 C -0.07 -0.65 5.87 -27.65 -0.16 -0.81 16 24 H 0.01 0.30 7.85 -51.93 -0.41 -0.11 16 25 H 0.06 1.15 4.59 -51.93 -0.24 0.91 16 26 H 0.07 1.59 6.86 -51.93 -0.36 1.23 16 27 H 0.03 0.68 6.99 -51.93 -0.36 0.31 16 28 H -0.02 -0.40 7.55 -51.93 -0.39 -0.79 16 29 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 30 H 0.04 0.71 7.78 -51.93 -0.40 0.31 16 31 H 0.08 1.31 7.78 -51.93 -0.40 0.91 16 32 H 0.14 1.97 8.03 -52.48 -0.42 1.55 16 33 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 34 H 0.11 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.08 0.49 8.14 -51.92 -0.42 0.06 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 313.28 15.07 4.72 4.72 Total: -1.00 -32.06 313.28 -8.36 -40.42 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: -5.50 Total: -3.10 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: -2.44 Total: -13.06 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: -0.39 Total: -39.82 kcal Atomic # 8 Polarization: -4.14 SS G_CDS: -0.12 Total: -4.26 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.06 -8.36 -40.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236616664.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.931 kcal (2) G-P(sol) polarization free energy of solvation -32.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds