Wall clock time and date at job start Tue Mar 31 2020 01:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46906 * 110.99728 * 2 1 4 4 C 1.50699 * 109.47140 * 66.04805 * 3 2 1 5 5 H 1.08003 * 119.99962 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99861 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99892 * 180.02562 * 6 4 3 8 8 Si 1.86805 * 120.00241 * 359.97438 * 6 4 3 9 9 H 1.48499 * 109.47135 * 90.00125 * 8 6 4 10 10 H 1.48503 * 109.47215 * 210.00315 * 8 6 4 11 11 H 1.48508 * 109.46958 * 330.00276 * 8 6 4 12 12 C 1.46905 * 110.99850 * 236.04849 * 2 1 3 13 13 C 1.50694 * 109.47033 * 293.95020 * 12 2 1 14 14 C 1.38016 * 119.87946 * 260.00359 * 13 12 2 15 15 C 1.38433 * 119.93318 * 179.97438 * 14 13 12 16 16 F 1.35099 * 120.03378 * 180.02562 * 15 14 13 17 17 C 1.38327 * 119.93065 * 0.08976 * 15 14 13 18 18 C 1.38475 * 120.29797 * 0.02562 * 17 15 14 19 19 C 1.38397 * 119.84844 * 359.53562 * 18 17 15 20 20 O 1.35898 * 121.78185 * 180.78226 * 19 18 17 21 21 C 1.42827 * 117.84533 * 342.75107 * 20 19 18 22 22 C 1.53403 * 108.37310 * 49.29605 * 21 20 19 23 23 C 1.50767 * 118.74626 * 179.53261 * 18 17 15 24 24 H 1.08996 * 109.47030 * 59.99921 * 1 2 3 25 25 H 1.08999 * 109.46702 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46890 * 299.99929 * 1 2 3 27 27 H 1.09004 * 109.47040 * 186.04743 * 3 2 1 28 28 H 1.09000 * 109.47033 * 306.04695 * 3 2 1 29 29 H 0.97002 * 119.99998 * 180.02562 * 7 6 4 30 30 H 1.08997 * 109.46807 * 53.95411 * 12 2 1 31 31 H 1.09000 * 109.46636 * 173.95277 * 12 2 1 32 32 H 1.08003 * 120.03085 * 359.93425 * 14 13 12 33 33 H 1.08004 * 119.84944 * 179.97438 * 17 15 14 34 34 H 1.08998 * 109.68228 * 169.01372 * 21 20 19 35 35 H 1.09000 * 109.68346 * 289.53574 * 21 20 19 36 36 H 1.08997 * 109.69918 * 55.01746 * 22 21 20 37 37 H 1.09009 * 109.69592 * 175.56651 * 22 21 20 38 38 H 1.09001 * 109.43574 * 282.35684 * 23 18 17 39 39 H 1.09005 * 109.43422 * 42.21526 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0739 1.5115 2.0485 6 6 2.0267 3.3495 1.5284 7 7 1.7143 3.9390 2.6618 8 14 2.9998 4.2763 0.2309 9 1 2.0631 4.9799 -0.6817 10 1 3.8862 5.2680 0.8913 11 1 3.8238 3.3176 -0.5485 12 6 1.9954 -0.7660 -1.1377 13 6 1.6370 -2.2204 -0.9729 14 6 2.5754 -3.1092 -0.4891 15 6 2.2471 -4.4454 -0.3368 16 9 3.1640 -5.3172 0.1371 17 6 0.9798 -4.8873 -0.6716 18 6 0.0364 -3.9988 -1.1597 19 6 0.3600 -2.6610 -1.3040 20 8 -0.5399 -1.7525 -1.7641 21 6 -1.6947 -2.2439 -2.4459 22 6 -2.3239 -3.3533 -1.5936 23 6 -1.3306 -4.5202 -1.5237 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 3.0797 1.3445 -0.1083 28 1 1.5610 1.9274 -0.8309 29 1 1.9882 4.8554 2.8235 30 1 1.5611 -0.3871 -2.0628 31 1 3.0797 -0.6610 -1.1757 32 1 3.5650 -2.7628 -0.2301 33 1 0.7253 -5.9302 -0.5527 34 1 -2.4121 -1.4348 -2.5830 35 1 -1.4046 -2.6457 -3.4168 36 1 -2.5287 -2.9757 -0.5919 37 1 -3.2518 -3.6903 -2.0560 38 1 -1.2810 -5.0259 -2.4880 39 1 -1.6646 -5.2250 -0.7621 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236616664.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:14 Heat of formation + Delta-G solvation = -71.737502 kcal Electronic energy + Delta-G solvation = -22115.525987 eV Core-core repulsion = 18744.025090 eV Total energy + Delta-G solvation = -3371.500897 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.81311 -41.86659 -38.71724 -37.96948 -35.40093 -34.47498 -32.13009 -31.28042 -29.69534 -28.09545 -26.62432 -25.58111 -24.62692 -22.81746 -21.60662 -20.98181 -19.04872 -18.75513 -18.22269 -17.81669 -17.01287 -16.57125 -16.41494 -15.98049 -15.74131 -15.64303 -15.36814 -14.97790 -14.71524 -14.45745 -14.30657 -13.97749 -13.85472 -13.60367 -13.39313 -13.00438 -12.77831 -12.55123 -12.47117 -12.12785 -12.06013 -11.88046 -11.77870 -11.48868 -11.46150 -11.23293 -10.78847 -9.83985 -9.09429 -8.92815 -8.27736 -6.31251 0.12918 0.20596 1.34655 1.36840 1.47990 2.34492 2.35109 2.48804 3.05260 3.23147 3.44285 3.59917 3.62503 3.83717 3.98690 4.08301 4.21360 4.32264 4.36672 4.43019 4.52630 4.63081 4.64612 4.74927 4.75888 4.85131 4.94143 4.95990 5.02263 5.06493 5.15812 5.21456 5.26502 5.31806 5.36390 5.53669 5.77218 5.98584 6.35463 6.47271 6.65689 6.74407 7.32186 8.89139 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.020096 B = 0.004940 C = 0.004296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.978425 B = 5666.179332 C = 6516.776327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.543 5.543 3 C 0.172 3.828 4 C -0.516 4.516 5 H 0.034 0.966 6 C 0.008 3.992 7 N -0.949 5.949 8 Si 0.949 3.051 9 H -0.267 1.267 10 H -0.280 1.280 11 H -0.248 1.248 12 C 0.101 3.899 13 C -0.088 4.088 14 C -0.116 4.116 15 C 0.052 3.948 16 F -0.147 7.147 17 C -0.117 4.117 18 C -0.134 4.134 19 C 0.122 3.878 20 O -0.320 6.320 21 C 0.043 3.957 22 C -0.155 4.155 23 C -0.074 4.074 24 H 0.018 0.982 25 H 0.082 0.918 26 H 0.034 0.966 27 H 0.032 0.968 28 H -0.013 1.013 29 H 0.267 0.733 30 H 0.043 0.957 31 H 0.082 0.918 32 H 0.141 0.859 33 H 0.162 0.838 34 H 0.118 0.882 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.114 0.886 38 H 0.102 0.898 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.353 -19.428 -14.389 24.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.267 5.267 3 C 0.045 3.955 4 C -0.554 4.554 5 H 0.053 0.947 6 C -0.189 4.189 7 N -0.590 5.590 8 Si 0.772 3.228 9 H -0.192 1.192 10 H -0.205 1.205 11 H -0.172 1.172 12 C -0.027 4.027 13 C -0.090 4.090 14 C -0.136 4.136 15 C 0.033 3.967 16 F -0.126 7.126 17 C -0.136 4.136 18 C -0.135 4.135 19 C 0.076 3.924 20 O -0.235 6.235 21 C -0.032 4.032 22 C -0.192 4.192 23 C -0.111 4.111 24 H 0.037 0.963 25 H 0.100 0.900 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.005 0.995 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.100 0.900 32 H 0.159 0.841 33 H 0.180 0.820 34 H 0.136 0.864 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.133 0.867 38 H 0.120 0.880 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.147 -19.314 -13.841 24.543 hybrid contribution 0.362 1.026 -0.463 1.182 sum -5.785 -18.288 -14.304 23.928 Atomic orbital electron populations 1.22262 0.87123 1.01306 0.98656 1.61949 1.08704 1.14574 1.41440 1.19975 0.95303 0.85630 0.94632 1.21242 1.34852 0.97564 1.01780 0.94720 1.25852 0.96951 0.98326 0.97786 1.70054 1.48671 1.13866 1.26381 0.85696 0.79250 0.78711 0.79165 1.19220 1.20544 1.17182 1.20877 1.00198 0.89319 0.92266 1.19206 0.91551 0.95635 1.02571 1.20904 1.01062 0.91437 1.00168 1.17567 0.88282 0.87198 1.03703 1.91459 1.65946 1.68691 1.86534 1.21082 0.90743 1.01695 1.00082 1.19933 0.98556 0.91435 1.03589 1.18582 0.88605 0.88785 0.96425 1.86331 1.33031 1.33631 1.70465 1.23321 0.85608 0.99302 0.94922 1.22289 1.00041 0.95604 1.01301 1.20655 0.88216 0.98199 1.04005 0.96326 0.90006 0.94667 0.95035 0.99548 0.92403 0.93878 0.89989 0.84118 0.82039 0.86405 0.90538 0.91618 0.86733 0.88001 0.88322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.28 7.86 127.69 1.00 3.28 16 2 N -0.54 -24.08 4.74 -931.65 -4.42 -28.51 16 3 C 0.17 8.59 3.79 85.56 0.32 8.92 16 4 C -0.52 -30.99 9.07 25.60 0.23 -30.75 16 5 H 0.03 2.33 7.35 -2.91 -0.02 2.31 16 6 C 0.01 0.47 5.47 84.65 0.46 0.94 16 7 N -0.95 -60.59 13.96 21.45 0.30 -60.29 16 8 Si 0.95 44.86 27.47 68.60 1.88 46.74 16 9 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 10 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 11 H -0.25 -10.90 6.54 99.48 0.65 -10.25 16 12 C 0.10 3.59 4.98 85.55 0.43 4.02 16 13 C -0.09 -2.77 5.18 -19.72 -0.10 -2.88 16 14 C -0.12 -3.42 9.64 22.26 0.21 -3.21 16 15 C 0.05 1.37 7.30 22.34 0.16 1.54 16 16 F -0.15 -4.00 17.27 44.97 0.78 -3.22 16 17 C -0.12 -2.54 9.64 22.35 0.22 -2.32 16 18 C -0.13 -2.90 5.75 -19.75 -0.11 -3.02 16 19 C 0.12 3.35 5.25 22.51 0.12 3.47 16 20 O -0.32 -8.52 6.08 -92.40 -0.56 -9.08 16 21 C 0.04 0.71 7.02 72.12 0.51 1.22 16 22 C -0.15 -2.05 6.22 30.86 0.19 -1.86 16 23 C -0.07 -0.99 5.87 30.00 0.18 -0.81 16 24 H 0.02 0.74 7.85 -2.39 -0.02 0.73 16 25 H 0.08 3.08 4.59 -2.39 -0.01 3.06 16 26 H 0.03 1.68 6.86 -2.39 -0.02 1.66 16 27 H 0.03 1.55 6.99 -2.38 -0.02 1.53 16 28 H -0.01 -0.65 7.55 -2.39 -0.02 -0.66 16 29 H 0.27 15.83 8.31 -92.71 -0.77 15.05 16 30 H 0.04 1.50 7.78 -2.39 -0.02 1.48 16 31 H 0.08 2.77 7.78 -2.39 -0.02 2.75 16 32 H 0.14 3.98 8.03 -2.91 -0.02 3.95 16 33 H 0.16 2.49 8.06 -2.91 -0.02 2.46 16 34 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.11 0.83 8.14 -2.38 -0.02 0.81 16 38 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 Total: -1.00 -71.59 313.28 2.79 -68.81 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: 0.99 Total: 7.02 kcal Atomic # 6 Polarization: -25.29 SS G_CDS: 3.82 Total: -21.47 kcal Atomic # 7 Polarization: -84.67 SS G_CDS: -4.12 Total: -88.79 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: -0.56 Total: -9.08 kcal Atomic # 9 Polarization: -4.00 SS G_CDS: 0.78 Total: -3.22 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.88 Total: 46.74 kcal Total: -71.59 2.79 -68.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236616664.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.930 kcal (2) G-P(sol) polarization free energy of solvation -71.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds