Wall clock time and date at job start Tue Mar 31 2020 00:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45197 * 109.47086 * 2 1 4 4 C 1.34725 * 117.00037 * 179.97438 * 3 2 1 5 5 O 1.21497 * 120.00094 * 359.97438 * 4 3 2 6 6 C 1.47582 * 120.00038 * 179.97438 * 4 3 2 7 7 C 1.41545 * 126.52397 * 180.02562 * 6 4 3 8 8 C 1.35344 * 105.50396 * 180.02562 * 7 6 4 9 9 C 1.50708 * 126.38151 * 179.97438 * 8 7 6 10 10 N 1.46897 * 109.46761 * 94.99722 * 9 8 7 11 11 C 1.47481 * 111.00304 * 265.96989 * 10 9 8 12 12 C 1.53516 * 87.93654 * 221.30068 * 11 10 9 13 13 C 1.50698 * 114.34296 * 139.68094 * 12 11 10 14 14 H 1.07999 * 119.99963 * 266.07973 * 13 12 11 15 15 C 1.37874 * 119.99640 * 86.08149 * 13 12 11 16 16 N 1.31510 * 120.00516 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99761 * 180.02562 * 15 13 12 18 18 H 1.48492 * 109.47262 * 89.99753 * 17 15 13 19 19 H 1.48505 * 109.46749 * 209.99788 * 17 15 13 20 20 H 1.48503 * 109.47081 * 329.99385 * 17 15 13 21 21 C 1.47485 * 110.99972 * 170.00333 * 10 9 8 22 22 N 1.35049 * 107.24166 * 359.97438 * 8 7 6 23 23 H 0.97002 * 124.87860 * 179.97438 * 22 8 7 24 24 N 1.28468 * 110.23866 * 0.02562 * 22 8 7 25 25 H 1.09000 * 109.47315 * 60.00137 * 1 2 3 26 26 H 1.09001 * 109.47066 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47103 * 300.00097 * 1 2 3 28 28 H 1.08997 * 109.47252 * 239.99628 * 2 1 3 29 29 H 1.08998 * 109.46814 * 119.99988 * 2 1 3 30 30 H 1.08005 * 127.25031 * 359.73670 * 7 6 4 31 31 H 1.08994 * 109.46835 * 214.99677 * 9 8 7 32 32 H 1.09004 * 109.46838 * 334.99975 * 9 8 7 33 33 H 1.09002 * 113.47431 * 336.06839 * 11 10 9 34 34 H 1.09000 * 113.47709 * 106.52845 * 11 10 9 35 35 H 1.08997 * 114.16578 * 272.37773 * 12 11 10 36 36 H 0.96996 * 120.00517 * 180.02562 * 16 15 13 37 37 H 1.08998 * 113.47515 * 253.47555 * 21 10 9 38 38 H 1.09006 * 113.47107 * 23.87165 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3496 1.5455 0.0005 5 8 4.0898 0.5820 0.0015 6 6 3.9137 2.9092 0.0000 7 6 5.2868 3.2529 -0.0001 8 6 5.3211 4.6059 0.0000 9 6 6.5566 5.4689 0.0005 10 7 6.8895 5.8481 -1.3791 11 6 7.8691 4.9128 -1.9627 12 6 8.5750 6.1266 -2.5833 13 6 10.0799 6.0601 -2.5381 14 1 10.6164 6.5207 -1.7218 15 6 10.7716 5.4114 -3.5389 16 7 10.1182 4.8502 -4.5327 17 14 12.6369 5.3284 -3.4826 18 1 13.0561 4.1103 -2.7441 19 1 13.1721 5.2769 -4.8669 20 1 13.1653 6.5323 -2.7921 21 6 7.9434 6.8795 -1.4041 22 7 4.0418 5.0388 -0.0006 23 1 3.7714 5.9703 -0.0003 24 7 3.2345 4.0394 -0.0003 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 6.1297 2.5777 0.0042 31 1 6.3722 6.3670 0.5898 32 1 7.3876 4.9133 0.4351 33 1 8.4719 4.3943 -1.2171 34 1 7.4377 4.2369 -2.7011 35 1 8.1861 6.4183 -3.5589 36 1 10.6048 4.3935 -5.2366 37 1 7.5749 7.8705 -1.6689 38 1 8.5653 6.8865 -0.5089 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237035526.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:48 Heat of formation + Delta-G solvation = 21.006013 kcal Electronic energy + Delta-G solvation = -20883.767843 eV Core-core repulsion = 17536.208569 eV Total energy + Delta-G solvation = -3347.559274 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.68095 -40.16710 -38.98288 -36.61513 -33.18877 -32.35181 -31.87582 -31.52877 -28.64963 -25.71367 -25.24246 -24.84973 -22.93923 -22.62295 -21.08800 -20.42153 -18.71923 -17.85591 -17.26925 -16.72800 -16.55677 -16.36055 -15.58387 -14.87501 -14.56562 -14.22248 -13.98372 -13.88060 -13.67446 -13.31606 -13.10865 -12.88841 -12.12888 -12.00254 -11.81031 -11.76766 -11.27139 -11.06389 -10.94206 -10.78907 -10.66310 -10.64759 -10.37364 -9.92353 -9.54409 -9.40302 -9.05446 -8.83266 -8.48744 -8.18611 -6.09930 -4.15434 1.33030 2.10342 2.39481 3.02155 3.18080 3.26398 3.34010 3.35968 4.35915 4.37485 4.62238 4.72876 4.76823 4.89727 5.02837 5.06508 5.20189 5.29173 5.51403 5.55467 5.58588 5.67372 5.74582 5.88105 5.99117 6.20713 6.27971 6.34517 6.38026 6.55716 6.58007 6.91426 7.04742 7.09065 7.62294 7.65495 7.80187 7.92520 7.94525 8.29861 8.87980 9.50381 10.99536 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.026756 B = 0.003212 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.243978 B = 8714.784005 C = 9391.050774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.345 6.345 4 C 0.560 3.440 5 O -0.500 6.500 6 C -0.008 4.008 7 C -0.169 4.169 8 C 0.050 3.950 9 C 0.080 3.920 10 N -0.484 5.484 11 C 0.006 3.994 12 C 0.043 3.957 13 C -0.519 4.519 14 H 0.058 0.942 15 C 0.068 3.932 16 N -0.884 5.884 17 Si 0.891 3.109 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.005 4.005 22 N -0.365 5.365 23 H 0.448 0.552 24 N -0.236 5.236 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.164 0.836 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.263 0.737 37 H 0.064 0.936 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.090 -3.590 10.516 18.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.261 6.261 4 C 0.402 3.598 5 O -0.385 6.385 6 C -0.166 4.166 7 C -0.197 4.197 8 C -0.076 4.076 9 C -0.050 4.050 10 N -0.207 5.207 11 C -0.123 4.123 12 C 0.024 3.976 13 C -0.557 4.557 14 H 0.077 0.923 15 C -0.136 4.136 16 N -0.521 5.521 17 Si 0.719 3.281 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.198 1.198 21 C -0.133 4.133 22 N -0.081 5.081 23 H 0.293 0.707 24 N -0.074 5.074 25 H 0.086 0.914 26 H 0.098 0.902 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.182 0.818 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.616 -3.572 10.052 19.746 hybrid contribution 2.351 -0.340 0.442 2.416 sum -14.266 -3.912 10.494 18.137 Atomic orbital electron populations 1.21799 0.92559 1.02854 1.03657 1.23067 0.95411 0.80069 1.02763 1.86635 1.23376 1.32127 1.83984 1.19556 0.80504 0.87290 0.72444 1.90867 1.60609 1.41010 1.46044 1.20590 0.92098 0.89979 1.13918 1.21467 0.95710 0.93940 1.08570 1.21406 0.87264 0.94281 1.04609 1.21247 0.91809 0.97111 0.94860 1.68931 1.30796 1.08686 1.12312 1.24179 0.91672 0.98012 0.98443 1.20081 0.94678 0.89740 0.93119 1.20999 0.90648 1.35780 1.08297 0.92345 1.25023 0.98417 0.95086 0.95049 1.69958 1.35636 1.35274 1.11253 0.86611 0.85633 0.78502 0.77368 1.20580 1.21135 1.19824 1.24057 0.92056 0.95975 1.01245 1.43342 1.03737 1.08977 1.51994 0.70748 1.73633 1.21650 0.94490 1.17675 0.91366 0.90232 0.91468 0.91011 0.91118 0.81842 0.90310 0.90842 0.92375 0.91590 0.91775 0.92755 0.91766 0.92424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.29 37.16 0.38 -0.70 16 2 C 0.06 0.61 6.19 37.16 0.23 0.84 16 3 O -0.35 -4.71 10.23 -40.56 -0.41 -5.13 16 4 C 0.56 8.76 7.97 34.54 0.28 9.04 16 5 O -0.50 -8.64 16.72 -19.26 -0.32 -8.96 16 6 C -0.01 -0.13 7.17 -82.79 -0.59 -0.72 16 7 C -0.17 -2.64 10.73 -39.35 -0.42 -3.06 16 8 C 0.05 0.72 6.81 -82.20 -0.56 0.16 16 9 C 0.08 1.15 5.37 -4.97 -0.03 1.12 16 10 N -0.48 -8.81 6.32 -246.09 -1.55 -10.36 16 11 C 0.01 0.12 7.28 -7.55 -0.06 0.07 16 12 C 0.04 1.02 3.76 -91.24 -0.34 0.68 16 13 C -0.52 -13.57 8.83 -34.44 -0.30 -13.87 16 14 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 15 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 16 N -0.88 -25.09 13.26 55.43 0.74 -24.35 16 17 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 21 C 0.00 -0.09 7.24 -7.55 -0.05 -0.15 16 22 N -0.36 -4.69 6.83 33.50 0.23 -4.46 16 23 H 0.45 4.21 8.96 -190.44 -1.71 2.51 16 24 N -0.24 -3.50 12.24 33.41 0.41 -3.09 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.16 2.49 8.06 -52.48 -0.42 2.07 16 31 H 0.08 0.94 8.08 -51.93 -0.42 0.52 16 32 H 0.07 1.06 7.30 -51.93 -0.38 0.68 16 33 H 0.06 1.25 7.38 -51.93 -0.38 0.86 16 34 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 35 H 0.06 1.70 8.11 -51.93 -0.42 1.28 16 36 H 0.26 7.10 8.31 -40.82 -0.34 6.77 16 37 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.06 1.05 7.87 -51.93 -0.41 0.64 16 LS Contribution 332.42 15.07 5.01 5.01 Total: -1.00 -30.63 332.42 -9.14 -39.78 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -6.65 Total: 0.86 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -1.57 Total: -4.87 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: -0.18 Total: -42.26 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: -0.74 Total: -14.09 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.63 -9.14 -39.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237035526.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.781 kcal (2) G-P(sol) polarization free energy of solvation -30.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds