Wall clock time and date at job start Tue Mar 31 2020 00:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.46823 * 2 1 4 4 C 1.46502 * 120.00168 * 269.99785 * 3 2 1 5 5 C 1.52991 * 109.47395 * 274.97052 * 4 3 2 6 6 C 1.34777 * 120.00006 * 90.00444 * 3 2 1 7 7 O 1.21577 * 119.99785 * 5.55375 * 6 3 2 8 8 C 1.47696 * 120.00101 * 185.55761 * 6 3 2 9 9 C 1.39650 * 120.16552 * 55.02018 * 8 6 3 10 10 C 1.37859 * 119.87839 * 180.02562 * 9 8 6 11 11 C 1.38463 * 120.21912 * 0.02562 * 10 9 8 12 12 C 1.38206 * 120.33351 * 359.96225 * 11 10 9 13 13 C 1.50706 * 119.93924 * 180.02562 * 12 11 10 14 14 C 1.50698 * 109.47197 * 265.02129 * 13 12 11 15 15 H 1.08004 * 119.99714 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00062 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00231 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 120.00066 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.46974 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47110 * 119.99913 * 18 16 14 21 21 H 1.48492 * 109.47166 * 239.99952 * 18 16 14 22 22 C 1.38316 * 120.12274 * 0.03820 * 12 11 10 23 23 F 1.35104 * 120.11124 * 180.25739 * 22 12 11 24 24 H 1.09000 * 109.47708 * 60.00246 * 1 2 3 25 25 H 1.09008 * 109.47074 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47417 * 299.99453 * 1 2 3 27 27 H 1.09000 * 109.46908 * 240.00529 * 2 1 3 28 28 H 1.08995 * 109.47340 * 120.00033 * 2 1 3 29 29 H 1.09004 * 109.46754 * 34.97694 * 4 3 2 30 30 H 1.09004 * 109.47044 * 154.97006 * 4 3 2 31 31 H 1.08995 * 109.47068 * 60.00204 * 5 4 3 32 32 H 1.09005 * 109.47003 * 180.02562 * 5 4 3 33 33 H 1.09004 * 109.47540 * 299.99534 * 5 4 3 34 34 H 1.08004 * 120.06576 * 0.02562 * 9 8 6 35 35 H 1.08004 * 119.89290 * 180.02562 * 10 9 8 36 36 H 1.07995 * 119.83080 * 179.97438 * 11 10 9 37 37 H 1.09007 * 109.46646 * 25.01924 * 13 12 11 38 38 H 1.08996 * 109.47137 * 145.01734 * 13 12 11 39 39 H 0.97000 * 120.00596 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6662 1.7313 -1.7729 6 6 2.2429 2.0165 1.1672 7 8 2.1379 1.4134 2.2176 8 6 2.6166 3.4454 1.1702 9 6 1.8061 4.3841 0.5283 10 6 2.1608 5.7163 0.5344 11 6 3.3182 6.1263 1.1743 12 6 4.1268 5.2050 1.8126 13 6 5.3842 5.6612 2.5068 14 6 6.5573 5.5077 1.5734 15 1 6.4074 5.1183 0.5773 16 6 7.8219 5.8643 1.9912 17 7 8.0044 6.3389 3.2040 18 14 9.2762 5.6734 0.8344 19 1 8.8079 5.1225 -0.4628 20 1 9.9074 6.9986 0.6098 21 1 10.2692 4.7478 1.4362 22 6 3.7842 3.8649 1.8152 23 9 4.5721 2.9651 2.4437 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.5245 1.7519 -2.0044 30 1 2.1818 3.1484 -1.1178 31 1 3.7468 0.6549 -1.9238 32 1 3.8479 2.2456 -2.7166 33 1 4.4041 2.0514 -1.0372 34 1 0.9029 4.0671 0.0280 35 1 1.5339 6.4425 0.0383 36 1 3.5904 7.1714 1.1748 37 1 5.2819 6.7081 2.7928 38 1 5.5473 5.0554 3.3981 39 1 8.8941 6.5895 3.4980 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250057582.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:17 Heat of formation + Delta-G solvation = -65.126637 kcal Electronic energy + Delta-G solvation = -22112.506743 eV Core-core repulsion = 18741.292515 eV Total energy + Delta-G solvation = -3371.214228 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.15054 -40.14190 -38.13802 -36.12295 -33.68159 -32.39489 -31.35789 -30.40582 -29.27601 -27.23658 -24.44335 -23.82913 -23.32468 -22.05965 -20.90421 -19.02137 -17.06272 -16.91050 -16.56237 -16.36735 -16.07747 -15.02412 -14.76684 -14.56734 -14.36688 -14.01417 -13.88536 -13.67280 -13.01488 -12.75481 -12.68163 -12.54485 -12.44225 -12.17147 -11.84927 -11.80765 -11.66256 -11.23563 -11.12890 -11.12327 -11.01445 -10.66698 -10.58038 -9.88401 -9.55449 -9.53680 -8.76582 -8.47140 -8.40481 -7.99350 -6.08596 -4.13082 1.28702 1.68015 2.78896 3.02261 3.27318 3.34980 3.38842 4.01606 4.41692 4.51001 4.72307 4.86460 4.97905 5.03419 5.16813 5.25189 5.27017 5.27254 5.37987 5.39633 5.51090 5.59392 5.73941 5.76370 5.78230 5.84586 6.02613 6.17193 6.21750 6.37905 6.48208 6.57301 6.68285 6.83373 7.29419 7.35578 7.47011 7.59814 7.85304 8.21590 8.23877 8.90286 9.50901 11.01631 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.021354 B = 0.005083 C = 0.004824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.942956 B = 5507.462587 C = 5803.114780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.110 3.890 3 N -0.610 5.610 4 C 0.095 3.905 5 C -0.172 4.172 6 C 0.571 3.429 7 O -0.528 6.528 8 C -0.172 4.172 9 C -0.094 4.094 10 C -0.136 4.136 11 C -0.079 4.079 12 C -0.071 4.071 13 C 0.048 3.952 14 C -0.513 4.513 15 H 0.057 0.943 16 C 0.061 3.939 17 N -0.891 5.891 18 Si 0.896 3.104 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 C 0.144 3.856 23 F -0.122 7.122 24 H 0.055 0.945 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.133 0.867 37 H 0.037 0.963 38 H 0.035 0.965 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.398 -6.627 -10.817 19.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.012 4.012 3 N -0.344 5.344 4 C -0.027 4.027 5 C -0.230 4.230 6 C 0.359 3.641 7 O -0.404 6.404 8 C -0.176 4.176 9 C -0.113 4.113 10 C -0.154 4.154 11 C -0.097 4.097 12 C -0.072 4.072 13 C 0.011 3.989 14 C -0.552 4.552 15 H 0.075 0.925 16 C -0.141 4.141 17 N -0.530 5.530 18 Si 0.723 3.277 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.208 1.208 22 C 0.123 3.877 23 F -0.100 7.100 24 H 0.074 0.926 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.094 0.906 28 H 0.102 0.898 29 H 0.093 0.907 30 H 0.112 0.888 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.144 0.856 35 H 0.144 0.856 36 H 0.151 0.849 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.288 -6.948 -10.107 18.830 hybrid contribution 1.035 -0.240 -0.578 1.210 sum -13.253 -7.187 -10.685 18.479 Atomic orbital electron populations 1.22134 0.95979 1.02085 1.02261 1.21390 0.94152 0.82437 1.03256 1.47914 1.66358 1.14115 1.06032 1.21826 0.97138 0.99082 0.84701 1.22179 0.97221 1.01730 1.01860 1.18268 0.76005 0.86413 0.83408 1.90777 1.50924 1.67416 1.31249 1.19745 0.98136 0.93737 1.06021 1.20749 0.98867 0.92662 0.99008 1.21017 0.97815 0.95241 1.01340 1.21167 0.93067 1.00082 0.95423 1.20814 0.98432 0.90480 0.97446 1.18357 0.87246 0.97611 0.95654 1.20998 0.91291 1.43465 0.99404 0.92452 1.24981 0.98891 0.94970 0.95245 1.69955 1.22620 1.43151 1.17229 0.86469 0.82407 0.77818 0.80972 1.19658 1.20851 1.20837 1.17530 0.88490 0.87123 0.94529 1.91525 1.72811 1.66461 1.79235 0.92635 0.91651 0.92250 0.90613 0.89751 0.90698 0.88754 0.92623 0.91354 0.91833 0.85620 0.85579 0.84914 0.94526 0.94642 0.92759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.55 10.24 37.16 0.38 -1.17 16 2 C 0.11 1.22 6.19 -4.05 -0.03 1.20 16 3 N -0.61 -8.18 2.47 -174.86 -0.43 -8.61 16 4 C 0.10 1.02 5.95 -4.05 -0.02 1.00 16 5 C -0.17 -1.93 10.24 37.15 0.38 -1.55 16 6 C 0.57 10.06 6.85 -12.40 -0.08 9.97 16 7 O -0.53 -11.12 16.45 5.30 0.09 -11.03 16 8 C -0.17 -3.07 4.91 -104.91 -0.51 -3.59 16 9 C -0.09 -1.33 7.48 -39.19 -0.29 -1.63 16 10 C -0.14 -1.89 10.03 -39.64 -0.40 -2.29 16 11 C -0.08 -1.37 9.67 -39.51 -0.38 -1.75 16 12 C -0.07 -1.52 5.07 -104.60 -0.53 -2.05 16 13 C 0.05 1.24 4.88 -29.03 -0.14 1.10 16 14 C -0.51 -14.28 9.09 -34.44 -0.31 -14.60 16 15 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 17 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 18 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 C 0.14 3.07 7.21 -38.96 -0.28 2.79 16 23 F -0.12 -2.96 15.98 2.25 0.04 -2.92 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.08 0.66 8.07 -51.93 -0.42 0.24 16 28 H 0.08 1.09 7.35 -51.93 -0.38 0.71 16 29 H 0.07 0.59 8.11 -51.93 -0.42 0.17 16 30 H 0.09 1.05 4.42 -51.93 -0.23 0.82 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.13 1.39 7.58 -52.48 -0.40 0.99 16 35 H 0.13 1.31 8.06 -52.48 -0.42 0.88 16 36 H 0.13 2.12 8.06 -52.49 -0.42 1.70 16 37 H 0.04 0.95 8.05 -51.93 -0.42 0.53 16 38 H 0.04 1.00 7.78 -51.93 -0.40 0.59 16 39 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 334.68 15.07 5.04 5.04 Total: -1.00 -32.69 334.68 -7.47 -40.16 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -5.59 Total: -2.58 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: -2.32 Total: -10.94 kcal Atomic # 7 Polarization: -34.46 SS G_CDS: 0.30 Total: -34.16 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.09 Total: -11.03 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.04 Total: -2.92 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.69 -7.47 -40.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250057582.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.971 kcal (2) G-P(sol) polarization free energy of solvation -32.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds