Wall clock time and date at job start Tue Mar 31 2020 00:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.46823 * 2 1 4 4 C 1.46502 * 120.00168 * 269.99785 * 3 2 1 5 5 C 1.52991 * 109.47395 * 274.97052 * 4 3 2 6 6 C 1.34777 * 120.00006 * 90.00444 * 3 2 1 7 7 O 1.21577 * 119.99785 * 5.55375 * 6 3 2 8 8 C 1.47696 * 120.00101 * 185.55761 * 6 3 2 9 9 C 1.39650 * 120.16552 * 55.02018 * 8 6 3 10 10 C 1.37859 * 119.87839 * 180.02562 * 9 8 6 11 11 C 1.38463 * 120.21912 * 0.02562 * 10 9 8 12 12 C 1.38206 * 120.33351 * 359.96225 * 11 10 9 13 13 C 1.50706 * 119.93924 * 180.02562 * 12 11 10 14 14 C 1.50698 * 109.47197 * 265.02129 * 13 12 11 15 15 H 1.08004 * 119.99714 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00062 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00231 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 120.00066 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.46974 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47110 * 119.99913 * 18 16 14 21 21 H 1.48492 * 109.47166 * 239.99952 * 18 16 14 22 22 C 1.38316 * 120.12274 * 0.03820 * 12 11 10 23 23 F 1.35104 * 120.11124 * 180.25739 * 22 12 11 24 24 H 1.09000 * 109.47708 * 60.00246 * 1 2 3 25 25 H 1.09008 * 109.47074 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47417 * 299.99453 * 1 2 3 27 27 H 1.09000 * 109.46908 * 240.00529 * 2 1 3 28 28 H 1.08995 * 109.47340 * 120.00033 * 2 1 3 29 29 H 1.09004 * 109.46754 * 34.97694 * 4 3 2 30 30 H 1.09004 * 109.47044 * 154.97006 * 4 3 2 31 31 H 1.08995 * 109.47068 * 60.00204 * 5 4 3 32 32 H 1.09005 * 109.47003 * 180.02562 * 5 4 3 33 33 H 1.09004 * 109.47540 * 299.99534 * 5 4 3 34 34 H 1.08004 * 120.06576 * 0.02562 * 9 8 6 35 35 H 1.08004 * 119.89290 * 180.02562 * 10 9 8 36 36 H 1.07995 * 119.83080 * 179.97438 * 11 10 9 37 37 H 1.09007 * 109.46646 * 25.01924 * 13 12 11 38 38 H 1.08996 * 109.47137 * 145.01734 * 13 12 11 39 39 H 0.97000 * 120.00596 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6662 1.7313 -1.7729 6 6 2.2429 2.0165 1.1672 7 8 2.1379 1.4134 2.2176 8 6 2.6166 3.4454 1.1702 9 6 1.8061 4.3841 0.5283 10 6 2.1608 5.7163 0.5344 11 6 3.3182 6.1263 1.1743 12 6 4.1268 5.2050 1.8126 13 6 5.3842 5.6612 2.5068 14 6 6.5573 5.5077 1.5734 15 1 6.4074 5.1183 0.5773 16 6 7.8219 5.8643 1.9912 17 7 8.0044 6.3389 3.2040 18 14 9.2762 5.6734 0.8344 19 1 8.8079 5.1225 -0.4628 20 1 9.9074 6.9986 0.6098 21 1 10.2692 4.7478 1.4362 22 6 3.7842 3.8649 1.8152 23 9 4.5721 2.9651 2.4437 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.5245 1.7519 -2.0044 30 1 2.1818 3.1484 -1.1178 31 1 3.7468 0.6549 -1.9238 32 1 3.8479 2.2456 -2.7166 33 1 4.4041 2.0514 -1.0372 34 1 0.9029 4.0671 0.0280 35 1 1.5339 6.4425 0.0383 36 1 3.5904 7.1714 1.1748 37 1 5.2819 6.7081 2.7928 38 1 5.5473 5.0554 3.3981 39 1 8.8941 6.5895 3.4980 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250057582.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:16 Heat of formation + Delta-G solvation = -84.654321 kcal Electronic energy + Delta-G solvation = -22113.353527 eV Core-core repulsion = 18741.292515 eV Total energy + Delta-G solvation = -3372.061012 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.86265 -41.40139 -39.51656 -37.30529 -35.60112 -33.67625 -32.76524 -31.72831 -30.30996 -29.08343 -25.63970 -25.48915 -24.49995 -23.22339 -22.42732 -20.23056 -18.65568 -18.39091 -18.19620 -17.73836 -17.50190 -16.62436 -16.48806 -16.09502 -15.63499 -15.07153 -14.93328 -14.71734 -14.51347 -14.41734 -14.21469 -13.86896 -13.50506 -13.45754 -13.28392 -13.06065 -12.86819 -12.78786 -12.64939 -12.48148 -12.39091 -12.02025 -11.94702 -11.62591 -11.58106 -10.97947 -10.65556 -9.96644 -9.68653 -9.52765 -8.24791 -6.38325 -0.08850 0.29363 1.36174 1.37976 1.46621 1.50568 1.92389 2.35905 2.67096 3.06791 3.31422 3.34588 3.90482 4.00108 4.08804 4.15029 4.19902 4.30777 4.35394 4.43613 4.48702 4.58149 4.70325 4.76851 4.91292 4.94777 4.97597 5.03873 5.13889 5.22927 5.26373 5.27141 5.32494 5.36961 5.58256 5.67175 5.69352 5.90433 6.09801 6.21589 6.72619 6.98099 7.30251 8.85722 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.021354 B = 0.005083 C = 0.004824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.942956 B = 5507.462587 C = 5803.114780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.102 3.898 3 N -0.599 5.599 4 C 0.090 3.910 5 C -0.171 4.171 6 C 0.562 3.438 7 O -0.578 6.578 8 C -0.174 4.174 9 C -0.071 4.071 10 C -0.108 4.108 11 C -0.080 4.080 12 C -0.104 4.104 13 C 0.058 3.942 14 C -0.528 4.528 15 H 0.056 0.944 16 C 0.005 3.995 17 N -0.929 5.929 18 Si 0.966 3.034 19 H -0.262 1.262 20 H -0.269 1.269 21 H -0.281 1.281 22 C 0.101 3.899 23 F -0.156 7.156 24 H 0.078 0.922 25 H 0.083 0.917 26 H 0.034 0.966 27 H 0.108 0.892 28 H 0.055 0.945 29 H 0.121 0.879 30 H 0.094 0.906 31 H 0.065 0.935 32 H 0.090 0.910 33 H 0.019 0.981 34 H 0.174 0.826 35 H 0.183 0.817 36 H 0.144 0.856 37 H 0.022 0.978 38 H -0.010 1.010 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.875 -6.398 -15.002 23.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.019 4.019 3 N -0.330 5.330 4 C -0.031 4.031 5 C -0.229 4.229 6 C 0.351 3.649 7 O -0.459 6.459 8 C -0.178 4.178 9 C -0.089 4.089 10 C -0.125 4.125 11 C -0.098 4.098 12 C -0.105 4.105 13 C 0.021 3.979 14 C -0.566 4.566 15 H 0.074 0.926 16 C -0.193 4.193 17 N -0.569 5.569 18 Si 0.790 3.210 19 H -0.186 1.186 20 H -0.194 1.194 21 H -0.207 1.207 22 C 0.081 3.919 23 F -0.134 7.134 24 H 0.097 0.903 25 H 0.102 0.898 26 H 0.053 0.947 27 H 0.126 0.874 28 H 0.074 0.926 29 H 0.139 0.861 30 H 0.113 0.887 31 H 0.084 0.916 32 H 0.109 0.891 33 H 0.038 0.962 34 H 0.191 0.809 35 H 0.200 0.800 36 H 0.162 0.838 37 H 0.040 0.960 38 H 0.008 0.992 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.783 -6.721 -14.346 23.079 hybrid contribution 1.696 -0.336 0.659 1.851 sum -15.087 -7.057 -13.687 21.558 Atomic orbital electron populations 1.22064 0.93998 1.03369 1.02102 1.21638 0.95732 0.81094 1.03443 1.48057 1.64451 1.14825 1.05704 1.22119 0.97890 0.99015 0.84038 1.22179 0.96499 1.02621 1.01589 1.18401 0.75994 0.86480 0.84074 1.90747 1.53527 1.68275 1.33307 1.19949 0.97169 0.94998 1.05677 1.21339 0.98902 0.92003 0.96615 1.21540 0.96099 0.96089 0.98802 1.21391 0.93695 0.99824 0.94850 1.20508 0.98205 0.91624 1.00139 1.18029 0.89771 0.95798 0.94340 1.21320 0.92506 1.43131 0.99613 0.92622 1.25939 1.02003 0.94477 0.96916 1.70084 1.23499 1.44178 1.19162 0.85379 0.78405 0.78276 0.78924 1.18619 1.19390 1.20732 1.17933 0.90297 0.86834 0.96835 1.91423 1.74105 1.67515 1.80398 0.90321 0.89772 0.94685 0.87403 0.92623 0.86140 0.88749 0.91643 0.89144 0.96154 0.80875 0.80001 0.83776 0.95962 0.99173 0.92480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 10.24 71.98 0.74 -1.70 16 2 C 0.10 2.07 6.19 86.38 0.53 2.60 16 3 N -0.60 -14.85 2.47 -825.41 -2.04 -16.90 16 4 C 0.09 1.58 5.95 86.38 0.51 2.09 16 5 C -0.17 -3.43 10.24 71.98 0.74 -2.70 16 6 C 0.56 19.87 6.85 86.74 0.59 20.46 16 7 O -0.58 -25.56 16.45 -3.96 -0.07 -25.62 16 8 C -0.17 -6.13 4.91 -20.05 -0.10 -6.23 16 9 C -0.07 -1.71 7.48 22.52 0.17 -1.55 16 10 C -0.11 -2.50 10.03 22.23 0.22 -2.28 16 11 C -0.08 -2.65 9.67 22.32 0.22 -2.44 16 12 C -0.10 -4.66 5.07 -19.85 -0.10 -4.76 16 13 C 0.06 3.19 4.88 29.10 0.14 3.33 16 14 C -0.53 -30.80 9.09 25.60 0.23 -30.57 16 15 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 16 C 0.00 0.29 5.46 84.65 0.46 0.75 16 17 N -0.93 -57.24 13.29 21.44 0.28 -56.96 16 18 Si 0.97 44.91 29.54 68.60 2.03 46.94 16 19 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 20 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 21 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 22 C 0.10 4.56 7.21 22.67 0.16 4.73 16 23 F -0.16 -8.30 15.98 44.97 0.72 -7.58 16 24 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 26 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.11 1.49 8.07 -2.39 -0.02 1.47 16 28 H 0.06 1.46 7.35 -2.39 -0.02 1.44 16 29 H 0.12 1.12 8.11 -2.38 -0.02 1.10 16 30 H 0.09 1.65 4.42 -2.38 -0.01 1.64 16 31 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 33 H 0.02 0.57 8.14 -2.38 -0.02 0.55 16 34 H 0.17 2.65 7.58 -2.91 -0.02 2.63 16 35 H 0.18 2.37 8.06 -2.91 -0.02 2.34 16 36 H 0.14 4.40 8.06 -2.91 -0.02 4.38 16 37 H 0.02 1.25 8.05 -2.38 -0.02 1.23 16 38 H -0.01 -0.63 7.78 -2.39 -0.02 -0.65 16 39 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -80.30 334.68 6.49 -73.82 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: 1.04 Total: 4.56 kcal Atomic # 6 Polarization: -22.79 SS G_CDS: 4.53 Total: -18.26 kcal Atomic # 7 Polarization: -72.10 SS G_CDS: -1.76 Total: -73.85 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: -0.07 Total: -25.62 kcal Atomic # 9 Polarization: -8.30 SS G_CDS: 0.72 Total: -7.58 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -80.30 6.49 -73.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250057582.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.837 kcal (2) G-P(sol) polarization free energy of solvation -80.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds