Wall clock time and date at job start Tue Mar 31 2020 01:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21284 * 120.00109 * 2 1 4 4 N 1.34777 * 120.00137 * 179.97438 * 2 1 3 5 5 C 1.46506 * 119.99873 * 179.97438 * 4 2 1 6 6 C 1.50699 * 109.46928 * 180.02562 * 5 4 2 7 7 C 1.38219 * 120.01356 * 104.72719 * 6 5 4 8 8 C 1.38228 * 120.02404 * 179.72033 * 7 6 5 9 9 C 1.50697 * 119.97108 * 180.27837 * 8 7 6 10 10 C 1.53005 * 109.47293 * 270.27512 * 9 8 7 11 11 C 1.52997 * 109.47359 * 180.02562 * 10 9 8 12 12 C 1.50699 * 109.47222 * 179.97438 * 11 10 9 13 13 H 1.08007 * 119.99754 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00044 * 180.02562 * 12 11 10 15 15 N 1.31510 * 120.00066 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99752 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47300 * 89.99954 * 16 14 12 18 18 H 1.48504 * 109.46993 * 209.99959 * 16 14 12 19 19 H 1.48500 * 109.47394 * 329.99725 * 16 14 12 20 20 C 1.38267 * 120.05277 * 0.55444 * 8 7 6 21 21 C 1.38175 * 120.02293 * 359.72065 * 20 8 7 22 22 C 1.38437 * 120.01498 * 285.00369 * 6 5 4 23 23 F 1.35107 * 120.02488 * 0.02562 * 22 6 5 24 24 H 1.09000 * 109.46978 * 239.99868 * 1 2 3 25 25 H 1.09001 * 109.47328 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.47043 * 119.99947 * 1 2 3 27 27 H 0.96995 * 120.00018 * 0.27749 * 4 2 1 28 28 H 1.09000 * 109.47212 * 300.00355 * 5 4 2 29 29 H 1.09001 * 109.46577 * 60.00430 * 5 4 2 30 30 H 1.07993 * 119.98737 * 0.02562 * 7 6 5 31 31 H 1.09007 * 109.47595 * 30.27472 * 9 8 7 32 32 H 1.08998 * 109.47351 * 150.27971 * 9 8 7 33 33 H 1.09001 * 109.47158 * 300.00263 * 10 9 8 34 34 H 1.09005 * 109.46824 * 59.99699 * 10 9 8 35 35 H 1.09001 * 109.47124 * 300.00190 * 11 10 9 36 36 H 1.09001 * 109.46884 * 60.00407 * 11 10 9 37 37 H 0.97001 * 119.99716 * 180.02562 * 15 14 12 38 38 H 1.08001 * 119.98841 * 179.70306 * 20 8 7 39 39 H 1.07996 * 120.01007 * 179.97438 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1671 0.0000 6 6 4.1483 -2.5879 0.0001 7 6 4.6652 -3.1386 -1.1575 8 6 5.1313 -4.4399 -1.1562 9 6 5.7004 -5.0370 -2.4174 10 6 4.5792 -5.7037 -3.2170 11 6 5.1571 -6.3105 -4.4972 12 6 4.0529 -6.9678 -5.2845 13 1 3.0401 -6.9537 -4.9094 14 6 4.3355 -7.5871 -6.4835 15 7 5.5688 -7.6047 -6.9398 16 14 2.9666 -8.4011 -7.4596 17 1 2.3707 -7.4135 -8.3948 18 1 3.5204 -9.5423 -8.2318 19 1 1.9205 -8.8948 -6.5284 20 6 5.0706 -5.1960 -0.0001 21 6 4.5491 -4.6494 1.1568 22 6 4.0870 -3.3440 1.1581 23 9 3.5763 -2.8088 2.2887 24 1 -0.3633 -0.5139 0.8900 25 1 -0.3634 1.0277 0.0005 26 1 -0.3633 -0.5138 -0.8900 27 1 1.6959 -2.0072 -0.0032 28 1 4.0089 -0.6538 -0.8905 29 1 4.0095 -0.6527 0.8895 30 1 4.7094 -2.5503 -2.0621 31 1 6.1568 -4.2503 -3.0182 32 1 6.4543 -5.7807 -2.1593 33 1 4.1228 -6.4905 -2.6163 34 1 3.8252 -4.9600 -3.4751 35 1 5.6138 -5.5241 -5.0980 36 1 5.9107 -7.0543 -4.2386 37 1 5.7675 -8.0400 -7.7835 38 1 5.4307 -6.2142 -0.0015 39 1 4.5014 -5.2403 2.0595 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250065962.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:11 Heat of formation + Delta-G solvation = -90.323828 kcal Electronic energy + Delta-G solvation = -20592.908831 eV Core-core repulsion = 17220.601971 eV Total energy + Delta-G solvation = -3372.306860 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.00968 -39.96367 -39.19663 -35.52458 -34.50467 -32.63369 -31.93410 -30.32653 -29.80591 -26.74762 -26.00667 -23.71240 -22.56735 -20.91715 -20.82141 -20.03089 -17.74273 -17.10023 -16.79490 -16.45903 -16.24434 -15.59491 -15.49768 -14.92763 -14.49002 -14.11634 -14.06667 -13.72697 -13.59660 -13.21540 -13.00869 -12.85122 -12.79508 -12.45230 -12.21888 -11.80158 -11.48134 -11.41203 -11.06684 -10.79420 -10.73298 -10.52966 -10.19226 -9.75717 -9.44394 -9.33502 -9.16228 -9.10525 -8.43940 -8.38445 -6.03491 -4.06053 0.96042 1.11689 2.44416 3.03083 3.29206 3.35748 3.38653 3.57357 4.12478 4.30871 4.42848 4.58526 4.63176 4.83491 5.01207 5.09061 5.14921 5.16740 5.32412 5.36847 5.41044 5.57335 5.61052 5.85577 5.90059 5.97047 6.02918 6.11665 6.19762 6.30300 6.39311 6.74738 6.79978 6.80183 7.06225 7.26866 7.63239 7.77014 7.96280 7.99656 8.38761 9.01112 9.58340 11.07750 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.016954 B = 0.003372 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.175932 B = 8302.202542 C = 9317.108115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.511 3.489 3 O -0.550 6.550 4 N -0.726 5.726 5 C 0.165 3.835 6 C -0.144 4.144 7 C -0.073 4.073 8 C -0.072 4.072 9 C -0.086 4.086 10 C -0.103 4.103 11 C 0.020 3.980 12 C -0.521 4.521 13 H 0.054 0.946 14 C 0.057 3.943 15 N -0.895 5.895 16 Si 0.891 3.109 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.274 1.274 20 C -0.082 4.082 21 C -0.152 4.152 22 C 0.096 3.904 23 F -0.141 7.141 24 H 0.087 0.913 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.403 0.597 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.135 0.865 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.049 0.951 34 H 0.048 0.952 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.261 0.739 38 H 0.135 0.865 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.246 9.491 16.717 19.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.298 3.702 3 O -0.428 6.428 4 N -0.378 5.378 5 C 0.042 3.958 6 C -0.146 4.146 7 C -0.091 4.091 8 C -0.072 4.072 9 C -0.124 4.124 10 C -0.141 4.141 11 C -0.017 4.017 12 C -0.560 4.560 13 H 0.072 0.928 14 C -0.144 4.144 15 N -0.535 5.535 16 Si 0.719 3.281 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.100 4.100 21 C -0.171 4.171 22 C 0.076 3.924 23 F -0.119 7.119 24 H 0.106 0.894 25 H 0.111 0.889 26 H 0.108 0.892 27 H 0.238 0.762 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.153 0.847 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.034 0.966 36 H 0.035 0.965 37 H 0.070 0.930 38 H 0.153 0.847 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.722 10.225 16.619 20.076 hybrid contribution -0.987 -0.948 -0.396 1.424 sum -5.709 9.277 16.223 19.541 Atomic orbital electron populations 1.21919 0.91497 1.05540 1.04430 1.20835 0.90691 0.83281 0.75389 1.90724 1.70929 1.31405 1.49699 1.46118 1.06930 1.09074 1.75678 1.20058 0.80097 0.92245 1.03411 1.19818 1.05129 0.96242 0.93380 1.20948 0.96463 0.95020 0.96679 1.20307 0.97284 0.93436 0.96174 1.20840 0.99222 1.00177 0.92119 1.21642 0.95976 0.98590 0.97849 1.19119 0.96245 0.95655 0.90657 1.21251 0.94642 1.35040 1.05040 0.92751 1.25023 0.95433 0.96345 0.97648 1.69959 1.18387 1.44364 1.20771 0.86611 0.82219 0.79120 0.80154 1.20654 1.21207 1.19890 1.21063 0.97515 1.00152 0.91314 1.21116 1.01950 0.93860 1.00153 1.17502 1.00000 0.92671 0.82207 1.91485 1.84821 1.86381 1.49238 0.89387 0.88939 0.89184 0.76238 0.90031 0.90471 0.84724 0.91027 0.90989 0.93246 0.93283 0.96563 0.96549 0.92981 0.84713 0.84814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.19 10.32 36.00 0.37 -0.82 16 2 C 0.51 5.65 7.94 -10.99 -0.09 5.56 16 3 O -0.55 -8.46 17.09 5.55 0.09 -8.36 16 4 N -0.73 -7.28 5.55 -61.47 -0.34 -7.62 16 5 C 0.16 1.81 5.49 -5.19 -0.03 1.78 16 6 C -0.14 -1.62 5.25 -104.56 -0.55 -2.17 16 7 C -0.07 -0.87 9.32 -39.59 -0.37 -1.24 16 8 C -0.07 -0.93 5.13 -104.62 -0.54 -1.46 16 9 C -0.09 -1.30 5.34 -27.88 -0.15 -1.45 16 10 C -0.10 -1.96 5.14 -26.73 -0.14 -2.10 16 11 C 0.02 0.50 4.97 -27.89 -0.14 0.36 16 12 C -0.52 -14.43 9.11 -34.44 -0.31 -14.74 16 13 H 0.05 1.46 7.74 -52.48 -0.41 1.06 16 14 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 15 N -0.90 -26.50 13.29 55.43 0.74 -25.76 16 16 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 20 C -0.08 -0.95 9.70 -39.59 -0.38 -1.34 16 21 C -0.15 -1.64 10.03 -39.52 -0.40 -2.03 16 22 C 0.10 1.09 7.25 -39.42 -0.29 0.81 16 23 F -0.14 -1.66 16.76 2.25 0.04 -1.62 16 24 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.09 0.63 8.12 -51.93 -0.42 0.21 16 26 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.40 3.33 8.46 -40.82 -0.35 2.99 16 28 H 0.08 0.90 7.95 -51.93 -0.41 0.49 16 29 H 0.08 0.90 8.08 -51.93 -0.42 0.48 16 30 H 0.13 1.51 8.00 -52.49 -0.42 1.09 16 31 H 0.07 1.06 8.09 -51.92 -0.42 0.64 16 32 H 0.07 1.06 8.08 -51.93 -0.42 0.64 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 38 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 39 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 341.79 15.07 5.15 5.15 Total: -1.00 -32.30 341.79 -8.23 -40.52 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -5.78 Total: -1.24 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: -3.10 Total: -17.34 kcal Atomic # 7 Polarization: -33.78 SS G_CDS: 0.40 Total: -33.38 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.09 Total: -8.36 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.30 -8.23 -40.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065962.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.799 kcal (2) G-P(sol) polarization free energy of solvation -32.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds