Wall clock time and date at job start Tue Mar 31 2020 01:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21284 * 120.00109 * 2 1 4 4 N 1.34777 * 120.00137 * 179.97438 * 2 1 3 5 5 C 1.46506 * 119.99873 * 179.97438 * 4 2 1 6 6 C 1.50699 * 109.46928 * 180.02562 * 5 4 2 7 7 C 1.38219 * 120.01356 * 104.72719 * 6 5 4 8 8 C 1.38228 * 120.02404 * 179.72033 * 7 6 5 9 9 C 1.50697 * 119.97108 * 180.27837 * 8 7 6 10 10 C 1.53005 * 109.47293 * 270.27512 * 9 8 7 11 11 C 1.52997 * 109.47359 * 180.02562 * 10 9 8 12 12 C 1.50699 * 109.47222 * 179.97438 * 11 10 9 13 13 H 1.08007 * 119.99754 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00044 * 180.02562 * 12 11 10 15 15 N 1.31510 * 120.00066 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99752 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47300 * 89.99954 * 16 14 12 18 18 H 1.48504 * 109.46993 * 209.99959 * 16 14 12 19 19 H 1.48500 * 109.47394 * 329.99725 * 16 14 12 20 20 C 1.38267 * 120.05277 * 0.55444 * 8 7 6 21 21 C 1.38175 * 120.02293 * 359.72065 * 20 8 7 22 22 C 1.38437 * 120.01498 * 285.00369 * 6 5 4 23 23 F 1.35107 * 120.02488 * 0.02562 * 22 6 5 24 24 H 1.09000 * 109.46978 * 239.99868 * 1 2 3 25 25 H 1.09001 * 109.47328 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.47043 * 119.99947 * 1 2 3 27 27 H 0.96995 * 120.00018 * 0.27749 * 4 2 1 28 28 H 1.09000 * 109.47212 * 300.00355 * 5 4 2 29 29 H 1.09001 * 109.46577 * 60.00430 * 5 4 2 30 30 H 1.07993 * 119.98737 * 0.02562 * 7 6 5 31 31 H 1.09007 * 109.47595 * 30.27472 * 9 8 7 32 32 H 1.08998 * 109.47351 * 150.27971 * 9 8 7 33 33 H 1.09001 * 109.47158 * 300.00263 * 10 9 8 34 34 H 1.09005 * 109.46824 * 59.99699 * 10 9 8 35 35 H 1.09001 * 109.47124 * 300.00190 * 11 10 9 36 36 H 1.09001 * 109.46884 * 60.00407 * 11 10 9 37 37 H 0.97001 * 119.99716 * 180.02562 * 15 14 12 38 38 H 1.08001 * 119.98841 * 179.70306 * 20 8 7 39 39 H 1.07996 * 120.01007 * 179.97438 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1671 0.0000 6 6 4.1483 -2.5879 0.0001 7 6 4.6652 -3.1386 -1.1575 8 6 5.1313 -4.4399 -1.1562 9 6 5.7004 -5.0370 -2.4174 10 6 4.5792 -5.7037 -3.2170 11 6 5.1571 -6.3105 -4.4972 12 6 4.0529 -6.9678 -5.2845 13 1 3.0401 -6.9537 -4.9094 14 6 4.3355 -7.5871 -6.4835 15 7 5.5688 -7.6047 -6.9398 16 14 2.9666 -8.4011 -7.4596 17 1 2.3707 -7.4135 -8.3948 18 1 3.5204 -9.5423 -8.2318 19 1 1.9205 -8.8948 -6.5284 20 6 5.0706 -5.1960 -0.0001 21 6 4.5491 -4.6494 1.1568 22 6 4.0870 -3.3440 1.1581 23 9 3.5763 -2.8088 2.2887 24 1 -0.3633 -0.5139 0.8900 25 1 -0.3634 1.0277 0.0005 26 1 -0.3633 -0.5138 -0.8900 27 1 1.6959 -2.0072 -0.0032 28 1 4.0089 -0.6538 -0.8905 29 1 4.0095 -0.6527 0.8895 30 1 4.7094 -2.5503 -2.0621 31 1 6.1568 -4.2503 -3.0182 32 1 6.4543 -5.7807 -2.1593 33 1 4.1228 -6.4905 -2.6163 34 1 3.8252 -4.9600 -3.4751 35 1 5.6138 -5.5241 -5.0980 36 1 5.9107 -7.0543 -4.2386 37 1 5.7675 -8.0400 -7.7835 38 1 5.4307 -6.2142 -0.0015 39 1 4.5014 -5.2403 2.0595 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250065962.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:11 Heat of formation + Delta-G solvation = -109.156242 kcal Electronic energy + Delta-G solvation = -20593.725466 eV Core-core repulsion = 17220.601971 eV Total energy + Delta-G solvation = -3373.123495 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.93016 -40.87585 -40.14258 -36.72197 -35.88513 -34.39009 -32.83489 -31.71801 -30.57488 -28.33520 -26.86680 -25.36210 -23.53551 -22.34088 -21.69217 -21.35525 -18.66126 -18.42737 -17.92398 -17.73640 -17.26800 -16.58307 -16.47019 -16.35861 -15.86012 -15.52098 -15.04107 -14.60741 -14.51509 -14.41027 -14.24302 -14.02550 -13.90763 -13.40172 -13.14780 -13.06342 -12.98506 -12.83387 -12.56577 -12.30821 -12.28534 -11.97900 -11.41370 -11.29684 -11.13502 -11.09676 -10.53256 -10.23699 -10.00136 -9.46860 -8.18319 -6.28999 0.04181 0.20379 1.41467 1.42083 1.53133 1.59911 2.20763 2.42290 2.67539 3.15081 3.22223 3.42266 3.68676 3.84938 3.92239 4.17243 4.22753 4.35045 4.47289 4.52039 4.57489 4.60717 4.65954 4.75050 4.84458 5.06221 5.06853 5.07477 5.15655 5.19088 5.29743 5.30424 5.34798 5.56403 5.60056 5.82194 5.86390 5.91643 6.28173 6.48323 6.88893 7.17770 7.40361 8.93160 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.016954 B = 0.003372 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.175932 B = 8302.202542 C = 9317.108115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.505 3.495 3 O -0.600 6.600 4 N -0.718 5.718 5 C 0.166 3.834 6 C -0.139 4.139 7 C -0.075 4.075 8 C -0.084 4.084 9 C -0.076 4.076 10 C -0.089 4.089 11 C 0.022 3.978 12 C -0.542 4.542 13 H 0.059 0.941 14 C -0.001 4.001 15 N -0.934 5.934 16 Si 0.961 3.039 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.263 1.263 20 C -0.082 4.082 21 C -0.146 4.146 22 C 0.094 3.906 23 F -0.142 7.142 24 H 0.111 0.889 25 H 0.091 0.909 26 H 0.109 0.891 27 H 0.414 0.586 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.138 0.862 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.052 0.948 34 H 0.049 0.951 35 H -0.008 1.008 36 H -0.006 1.006 37 H 0.263 0.737 38 H 0.148 0.852 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.968 8.899 17.733 21.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.294 3.706 3 O -0.482 6.482 4 N -0.371 5.371 5 C 0.043 3.957 6 C -0.140 4.140 7 C -0.094 4.094 8 C -0.084 4.084 9 C -0.113 4.113 10 C -0.126 4.126 11 C -0.015 4.015 12 C -0.580 4.580 13 H 0.077 0.923 14 C -0.198 4.198 15 N -0.574 5.574 16 Si 0.786 3.214 17 H -0.199 1.199 18 H -0.209 1.209 19 H -0.187 1.187 20 C -0.100 4.100 21 C -0.164 4.164 22 C 0.074 3.926 23 F -0.121 7.121 24 H 0.129 0.871 25 H 0.110 0.890 26 H 0.127 0.873 27 H 0.250 0.750 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.156 0.844 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.010 0.990 36 H 0.012 0.988 37 H 0.072 0.928 38 H 0.166 0.834 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -6.464 9.608 17.651 21.111 hybrid contribution -0.422 -0.757 -0.671 1.096 sum -6.886 8.850 16.980 20.348 Atomic orbital electron populations 1.21936 0.87977 1.06202 1.06405 1.21629 0.92384 0.82537 0.74050 1.90701 1.72237 1.33101 1.52148 1.46104 1.06573 1.09518 1.74889 1.19967 0.80866 0.92058 1.02852 1.19739 1.04956 0.96116 0.93208 1.20983 0.96380 0.94855 0.97133 1.20092 0.98629 0.94018 0.95674 1.20619 0.97888 1.00025 0.92803 1.21402 0.96984 0.98591 0.95660 1.19048 0.95219 0.94415 0.92863 1.21735 0.95519 1.35124 1.05665 0.92286 1.25957 0.97928 0.97038 0.98927 1.70089 1.20579 1.45381 1.21352 0.85501 0.79178 0.78076 0.78630 1.19904 1.20862 1.18669 1.21224 0.97103 1.00653 0.90995 1.21323 1.00808 0.93611 1.00689 1.17638 0.99886 0.93027 0.82046 1.91486 1.84840 1.86467 1.49307 0.87093 0.89017 0.87261 0.75007 0.90436 0.91308 0.84412 0.91192 0.90683 0.92923 0.93265 0.98999 0.98756 0.92837 0.83400 0.82474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.91 10.32 71.23 0.74 -1.18 16 2 C 0.50 10.69 7.94 87.66 0.70 11.39 16 3 O -0.60 -18.60 17.09 -3.04 -0.05 -18.65 16 4 N -0.72 -13.54 5.55 -466.78 -2.59 -16.13 16 5 C 0.17 3.55 5.49 85.63 0.47 4.01 16 6 C -0.14 -2.93 5.25 -19.82 -0.10 -3.03 16 7 C -0.07 -1.70 9.32 22.26 0.21 -1.50 16 8 C -0.08 -2.05 5.13 -19.86 -0.10 -2.15 16 9 C -0.08 -2.25 5.34 29.85 0.16 -2.09 16 10 C -0.09 -3.35 5.14 30.60 0.16 -3.20 16 11 C 0.02 1.09 4.97 29.85 0.15 1.24 16 12 C -0.54 -30.18 9.11 25.60 0.23 -29.94 16 13 H 0.06 3.15 7.74 -2.91 -0.02 3.12 16 14 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 15 N -0.93 -56.09 13.29 21.45 0.28 -55.81 16 16 Si 0.96 43.47 29.54 68.60 2.03 45.49 16 17 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 18 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 19 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 20 C -0.08 -1.71 9.70 22.26 0.22 -1.49 16 21 C -0.15 -2.74 10.03 22.31 0.22 -2.52 16 22 C 0.09 1.94 7.25 22.38 0.16 2.10 16 23 F -0.14 -3.08 16.76 44.97 0.75 -2.32 16 24 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.09 1.11 8.12 -2.39 -0.02 1.09 16 26 H 0.11 0.87 8.14 -2.38 -0.02 0.85 16 27 H 0.41 6.02 8.46 -92.71 -0.78 5.24 16 28 H 0.08 1.72 7.95 -2.39 -0.02 1.70 16 29 H 0.07 1.59 8.08 -2.39 -0.02 1.58 16 30 H 0.14 2.99 8.00 -2.91 -0.02 2.97 16 31 H 0.07 2.07 8.09 -2.38 -0.02 2.05 16 32 H 0.07 2.16 8.08 -2.39 -0.02 2.14 16 33 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 35 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 36 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 37 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 38 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 39 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -70.06 341.79 4.35 -65.72 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: 0.26 Total: 9.63 kcal Atomic # 6 Polarization: -31.60 SS G_CDS: 3.66 Total: -27.93 kcal Atomic # 7 Polarization: -69.63 SS G_CDS: -2.30 Total: -71.93 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.05 Total: -18.65 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.75 Total: -2.32 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Total: -70.06 4.35 -65.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065962.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.440 kcal (2) G-P(sol) polarization free energy of solvation -70.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds