Wall clock time and date at job start Tue Mar 31 2020 01:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46502 * 119.99466 * 2 1 4 4 C 1.34773 * 120.00060 * 179.97438 * 2 1 3 5 5 O 1.21564 * 120.00269 * 5.02670 * 4 2 1 6 6 C 1.47696 * 119.99506 * 185.02656 * 4 2 1 7 7 C 1.39657 * 120.16904 * 306.87905 * 6 4 2 8 8 C 1.37853 * 119.87841 * 179.97438 * 7 6 4 9 9 C 1.38460 * 120.22023 * 359.74636 * 8 7 6 10 10 C 1.38208 * 120.33681 * 0.50830 * 9 8 7 11 11 C 1.50696 * 119.94210 * 179.76420 * 10 9 8 12 12 C 1.52991 * 109.47701 * 264.72974 * 11 10 9 13 13 C 1.52999 * 109.47533 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.46966 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00453 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99656 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00012 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99937 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46857 * 60.00046 * 18 16 14 20 20 H 1.48499 * 109.46923 * 179.97438 * 18 16 14 21 21 H 1.48492 * 109.47057 * 300.00445 * 18 16 14 22 22 C 1.38315 * 120.11388 * 359.49531 * 10 9 8 23 23 F 1.35105 * 120.10899 * 180.23207 * 22 10 9 24 24 H 1.09007 * 109.46848 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47816 * 300.00291 * 1 2 3 26 26 H 1.09000 * 109.47035 * 60.00674 * 1 2 3 27 27 H 1.08996 * 109.47049 * 305.43973 * 3 2 1 28 28 H 1.08994 * 109.47234 * 65.44323 * 3 2 1 29 29 H 1.08999 * 109.46678 * 185.44166 * 3 2 1 30 30 H 1.08004 * 120.06001 * 359.95708 * 7 6 4 31 31 H 1.08004 * 119.88962 * 179.97438 * 8 7 6 32 32 H 1.07997 * 119.83527 * 180.27937 * 9 8 7 33 33 H 1.08999 * 109.47099 * 144.72509 * 11 10 9 34 34 H 1.09008 * 109.47076 * 24.73108 * 11 10 9 35 35 H 1.09007 * 109.47039 * 59.99308 * 12 11 10 36 36 H 1.09008 * 109.46966 * 300.00203 * 12 11 10 37 37 H 1.08998 * 109.46781 * 299.99914 * 13 12 11 38 38 H 1.09002 * 109.46853 * 60.00093 * 13 12 11 39 39 H 0.97002 * 119.99916 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5347 -2.2180 -0.0912 6 6 3.6116 -1.1694 0.1126 7 6 4.3834 -0.4047 -0.7648 8 6 5.7575 -0.4109 -0.6545 9 6 6.3745 -1.1685 0.3266 10 6 5.6197 -1.9327 1.1963 11 6 6.3008 -2.7580 2.2574 12 6 6.4874 -4.1889 1.7491 13 6 7.1794 -5.0267 2.8261 14 6 7.3626 -6.4363 2.3255 15 1 7.0200 -6.7074 1.3378 16 6 7.9684 -7.3796 3.1282 17 7 8.3859 -7.0493 4.3308 18 14 8.1948 -9.1271 2.5080 19 1 9.0290 -9.1121 1.2796 20 1 8.8677 -9.9398 3.5529 21 1 6.8682 -9.7181 2.1983 22 6 4.2401 -1.9368 1.0981 23 9 3.5021 -2.6803 1.9514 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 1.8630 1.8813 -0.8372 28 1 2.0092 1.7970 0.9347 29 1 3.2651 1.0720 -0.0975 30 1 3.9046 0.1902 -1.5286 31 1 6.3546 0.1802 -1.3332 32 1 7.4512 -1.1652 0.4103 33 1 5.6873 -2.7695 3.1582 34 1 7.2742 -2.3240 2.4863 35 1 7.1009 -4.1774 0.8481 36 1 5.5140 -4.6230 1.5202 37 1 8.1527 -4.5925 3.0545 38 1 6.5662 -5.0383 3.7272 39 1 8.8125 -7.7129 4.8953 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250066332.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:23 Heat of formation + Delta-G solvation = -62.646703 kcal Electronic energy + Delta-G solvation = -21252.561029 eV Core-core repulsion = 17881.454339 eV Total energy + Delta-G solvation = -3371.106690 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.76707 -40.41122 -38.64974 -35.79136 -34.87509 -32.77901 -31.24600 -30.36152 -28.33287 -26.82118 -26.60097 -23.85771 -23.29386 -21.62254 -20.20483 -19.68364 -17.53838 -17.31417 -16.86948 -16.39043 -16.12585 -15.58320 -15.36736 -15.03876 -14.46860 -14.13495 -13.90088 -13.57958 -13.37355 -13.15917 -12.89856 -12.77917 -12.56585 -12.35598 -12.29446 -12.04838 -11.65556 -11.33614 -11.22606 -10.74490 -10.70971 -10.48231 -10.08862 -9.66358 -9.41012 -9.13215 -9.05384 -8.87990 -8.54579 -8.30229 -5.95660 -3.97640 0.75491 1.08178 2.43521 2.72665 3.37492 3.41081 3.43635 3.45300 4.14849 4.19226 4.50167 4.63884 4.74819 4.80004 4.97064 5.02482 5.06987 5.12372 5.24596 5.37002 5.40068 5.47904 5.58035 5.67695 5.87900 5.96322 5.99885 6.10277 6.13932 6.28498 6.32092 6.72595 6.76914 6.87898 6.99115 7.14831 7.71343 7.85789 7.89030 8.04350 8.47477 9.09020 9.66151 11.15699 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.027451 B = 0.003524 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.737542 B = 7943.088444 C = 8437.173355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.618 5.618 3 C 0.061 3.939 4 C 0.564 3.436 5 O -0.520 6.520 6 C -0.168 4.168 7 C -0.081 4.081 8 C -0.132 4.132 9 C -0.071 4.071 10 C -0.100 4.100 11 C -0.085 4.085 12 C -0.104 4.104 13 C 0.022 3.978 14 C -0.520 4.520 15 H 0.054 0.946 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.276 1.276 22 C 0.148 3.852 23 F -0.120 7.120 24 H 0.088 0.912 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.094 0.906 30 H 0.135 0.865 31 H 0.134 0.866 32 H 0.139 0.861 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.016 0.984 38 H 0.017 0.983 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.910 21.779 -9.962 25.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.352 5.352 3 C -0.082 4.082 4 C 0.351 3.649 5 O -0.395 6.395 6 C -0.172 4.172 7 C -0.100 4.100 8 C -0.150 4.150 9 C -0.089 4.089 10 C -0.101 4.101 11 C -0.123 4.123 12 C -0.142 4.142 13 C -0.015 4.015 14 C -0.559 4.559 15 H 0.073 0.927 16 C -0.144 4.144 17 N -0.536 5.536 18 Si 0.720 3.280 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 C 0.128 3.872 23 F -0.098 7.098 24 H 0.106 0.894 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.112 0.888 30 H 0.153 0.847 31 H 0.152 0.848 32 H 0.156 0.844 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.035 0.965 38 H 0.035 0.965 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.211 21.109 -9.812 25.419 hybrid contribution -0.026 -0.990 -0.143 1.001 sum -10.237 20.119 -9.955 24.671 Atomic orbital electron populations 1.21687 0.78711 1.04444 1.01317 1.47579 1.07209 1.06203 1.74227 1.22205 0.98930 0.84951 1.02107 1.18222 0.86878 0.83608 0.76145 1.90826 1.69458 1.30998 1.48245 1.19790 0.93438 1.03437 1.00491 1.20996 0.93906 0.97256 0.97803 1.21098 0.94040 1.00673 0.99227 1.21203 1.00624 0.93958 0.93136 1.20303 0.91101 0.98827 0.99864 1.20804 0.99952 0.96250 0.95246 1.21648 1.00735 0.91468 1.00347 1.19099 0.95314 0.93785 0.93268 1.21230 1.38331 0.95133 1.01157 0.92749 1.25018 0.95660 0.98839 0.94920 1.69954 1.40572 1.34470 1.08633 0.86660 0.78383 0.84601 0.78396 1.20249 1.21297 1.20198 1.17485 0.88799 0.91652 0.89287 1.91563 1.76632 1.73804 1.67833 0.89353 0.92057 0.92123 0.91624 0.92102 0.88818 0.84709 0.84784 0.84354 0.90814 0.90454 0.93105 0.93147 0.96521 0.96503 0.92986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.69 10.73 59.85 0.64 1.33 16 2 N -0.62 -6.51 3.27 -190.70 -0.62 -7.14 16 3 C 0.06 0.41 10.07 59.85 0.60 1.01 16 4 C 0.56 8.21 6.92 -12.40 -0.09 8.13 16 5 O -0.52 -9.70 16.16 5.31 0.09 -9.61 16 6 C -0.17 -2.30 5.05 -104.91 -0.53 -2.83 16 7 C -0.08 -0.81 7.34 -39.19 -0.29 -1.10 16 8 C -0.13 -1.23 10.03 -39.64 -0.40 -1.63 16 9 C -0.07 -0.83 9.67 -39.51 -0.38 -1.21 16 10 C -0.10 -1.50 5.13 -104.61 -0.54 -2.04 16 11 C -0.09 -1.47 5.12 -27.89 -0.14 -1.61 16 12 C -0.10 -2.24 5.13 -26.74 -0.14 -2.37 16 13 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 14 C -0.52 -15.22 9.11 -34.44 -0.31 -15.54 16 15 H 0.05 1.56 7.74 -52.48 -0.41 1.15 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 17 N -0.90 -27.49 13.29 55.43 0.74 -26.75 16 18 Si 0.89 22.26 29.54 -169.99 -5.02 17.24 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 C 0.15 2.39 7.21 -38.96 -0.28 2.11 16 23 F -0.12 -2.28 15.93 2.25 0.04 -2.24 16 24 H 0.09 0.94 6.91 -51.93 -0.36 0.58 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.09 0.63 3.91 -51.93 -0.20 0.42 16 30 H 0.14 0.95 7.09 -52.48 -0.37 0.58 16 31 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 32 H 0.14 1.36 8.06 -52.49 -0.42 0.93 16 33 H 0.07 1.31 7.79 -51.93 -0.40 0.91 16 34 H 0.08 1.21 8.05 -51.92 -0.42 0.79 16 35 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.05 1.14 8.14 -51.92 -0.42 0.71 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 332.51 15.07 5.01 5.01 Total: -1.00 -35.11 332.51 -7.39 -42.50 By element: Atomic # 1 Polarization: 0.24 SS G_CDS: -5.53 Total: -5.29 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: -2.09 Total: -13.72 kcal Atomic # 7 Polarization: -34.00 SS G_CDS: 0.11 Total: -33.89 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.09 Total: -9.61 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -35.11 -7.39 -42.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066332.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.152 kcal (2) G-P(sol) polarization free energy of solvation -35.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds