Wall clock time and date at job start Tue Mar 31 2020 01:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46502 * 119.99466 * 2 1 4 4 C 1.34773 * 120.00060 * 179.97438 * 2 1 3 5 5 O 1.21564 * 120.00269 * 5.02670 * 4 2 1 6 6 C 1.47696 * 119.99506 * 185.02656 * 4 2 1 7 7 C 1.39657 * 120.16904 * 306.87905 * 6 4 2 8 8 C 1.37853 * 119.87841 * 179.97438 * 7 6 4 9 9 C 1.38460 * 120.22023 * 359.74636 * 8 7 6 10 10 C 1.38208 * 120.33681 * 0.50830 * 9 8 7 11 11 C 1.50696 * 119.94210 * 179.76420 * 10 9 8 12 12 C 1.52991 * 109.47701 * 264.72974 * 11 10 9 13 13 C 1.52999 * 109.47533 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.46966 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00453 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99656 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00012 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99937 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46857 * 60.00046 * 18 16 14 20 20 H 1.48499 * 109.46923 * 179.97438 * 18 16 14 21 21 H 1.48492 * 109.47057 * 300.00445 * 18 16 14 22 22 C 1.38315 * 120.11388 * 359.49531 * 10 9 8 23 23 F 1.35105 * 120.10899 * 180.23207 * 22 10 9 24 24 H 1.09007 * 109.46848 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47816 * 300.00291 * 1 2 3 26 26 H 1.09000 * 109.47035 * 60.00674 * 1 2 3 27 27 H 1.08996 * 109.47049 * 305.43973 * 3 2 1 28 28 H 1.08994 * 109.47234 * 65.44323 * 3 2 1 29 29 H 1.08999 * 109.46678 * 185.44166 * 3 2 1 30 30 H 1.08004 * 120.06001 * 359.95708 * 7 6 4 31 31 H 1.08004 * 119.88962 * 179.97438 * 8 7 6 32 32 H 1.07997 * 119.83527 * 180.27937 * 9 8 7 33 33 H 1.08999 * 109.47099 * 144.72509 * 11 10 9 34 34 H 1.09008 * 109.47076 * 24.73108 * 11 10 9 35 35 H 1.09007 * 109.47039 * 59.99308 * 12 11 10 36 36 H 1.09008 * 109.46966 * 300.00203 * 12 11 10 37 37 H 1.08998 * 109.46781 * 299.99914 * 13 12 11 38 38 H 1.09002 * 109.46853 * 60.00093 * 13 12 11 39 39 H 0.97002 * 119.99916 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5347 -2.2180 -0.0912 6 6 3.6116 -1.1694 0.1126 7 6 4.3834 -0.4047 -0.7648 8 6 5.7575 -0.4109 -0.6545 9 6 6.3745 -1.1685 0.3266 10 6 5.6197 -1.9327 1.1963 11 6 6.3008 -2.7580 2.2574 12 6 6.4874 -4.1889 1.7491 13 6 7.1794 -5.0267 2.8261 14 6 7.3626 -6.4363 2.3255 15 1 7.0200 -6.7074 1.3378 16 6 7.9684 -7.3796 3.1282 17 7 8.3859 -7.0493 4.3308 18 14 8.1948 -9.1271 2.5080 19 1 9.0290 -9.1121 1.2796 20 1 8.8677 -9.9398 3.5529 21 1 6.8682 -9.7181 2.1983 22 6 4.2401 -1.9368 1.0981 23 9 3.5021 -2.6803 1.9514 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 1.8630 1.8813 -0.8372 28 1 2.0092 1.7970 0.9347 29 1 3.2651 1.0720 -0.0975 30 1 3.9046 0.1902 -1.5286 31 1 6.3546 0.1802 -1.3332 32 1 7.4512 -1.1652 0.4103 33 1 5.6873 -2.7695 3.1582 34 1 7.2742 -2.3240 2.4863 35 1 7.1009 -4.1774 0.8481 36 1 5.5140 -4.6230 1.5202 37 1 8.1527 -4.5925 3.0545 38 1 6.5662 -5.0383 3.7272 39 1 8.8125 -7.7129 4.8953 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250066332.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:23 Heat of formation + Delta-G solvation = -84.559911 kcal Electronic energy + Delta-G solvation = -21253.511257 eV Core-core repulsion = 17881.454339 eV Total energy + Delta-G solvation = -3372.056918 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.03629 -41.38866 -39.66945 -36.79568 -36.47587 -34.65753 -32.48159 -31.67270 -29.18626 -28.37112 -27.41879 -25.57419 -24.26801 -22.93423 -21.89018 -20.70198 -18.66185 -18.47562 -18.18882 -17.91696 -17.28721 -16.68880 -16.52025 -16.39745 -15.87051 -15.60113 -15.14560 -14.67228 -14.47804 -14.30751 -14.25593 -13.98997 -13.52921 -13.35635 -13.28536 -13.25345 -12.93939 -12.87155 -12.64185 -12.55139 -12.39107 -12.20616 -11.55530 -11.38822 -11.21329 -11.13655 -10.57223 -10.01826 -9.74396 -9.65750 -8.22129 -6.33530 -0.20567 0.11529 1.37306 1.40445 1.41154 1.49070 1.90911 2.39086 2.50765 3.10353 3.16572 3.30289 3.60685 3.88880 4.07935 4.16076 4.23856 4.31149 4.40543 4.43238 4.49737 4.59337 4.70231 4.73526 4.86936 4.88650 4.91202 5.00929 5.05148 5.15229 5.19025 5.25650 5.38294 5.40223 5.48525 5.71729 5.79067 5.83951 6.12706 6.23177 6.82193 6.90845 7.35376 8.89448 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.027451 B = 0.003524 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.737542 B = 7943.088444 C = 8437.173355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.611 5.611 3 C 0.054 3.946 4 C 0.553 3.447 5 O -0.580 6.580 6 C -0.178 4.178 7 C -0.062 4.062 8 C -0.110 4.110 9 C -0.066 4.066 10 C -0.120 4.120 11 C -0.075 4.075 12 C -0.090 4.090 13 C 0.026 3.974 14 C -0.549 4.549 15 H 0.055 0.945 16 C 0.001 3.999 17 N -0.932 5.932 18 Si 0.965 3.035 19 H -0.263 1.263 20 H -0.279 1.279 21 H -0.272 1.272 22 C 0.107 3.893 23 F -0.152 7.152 24 H 0.059 0.941 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.098 0.902 28 H 0.071 0.929 29 H 0.096 0.904 30 H 0.174 0.826 31 H 0.184 0.816 32 H 0.162 0.838 33 H 0.054 0.946 34 H 0.095 0.905 35 H 0.061 0.939 36 H 0.028 0.972 37 H 0.004 0.996 38 H -0.014 1.014 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.059 24.275 -12.668 28.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.343 5.343 3 C -0.087 4.087 4 C 0.341 3.659 5 O -0.460 6.460 6 C -0.182 4.182 7 C -0.080 4.080 8 C -0.128 4.128 9 C -0.084 4.084 10 C -0.121 4.121 11 C -0.113 4.113 12 C -0.128 4.128 13 C -0.011 4.011 14 C -0.587 4.587 15 H 0.073 0.927 16 C -0.197 4.197 17 N -0.572 5.572 18 Si 0.789 3.211 19 H -0.188 1.188 20 H -0.204 1.204 21 H -0.197 1.197 22 C 0.087 3.913 23 F -0.131 7.131 24 H 0.078 0.922 25 H 0.098 0.902 26 H 0.109 0.891 27 H 0.117 0.883 28 H 0.090 0.910 29 H 0.114 0.886 30 H 0.191 0.809 31 H 0.201 0.799 32 H 0.179 0.821 33 H 0.073 0.927 34 H 0.113 0.887 35 H 0.079 0.921 36 H 0.047 0.953 37 H 0.022 0.978 38 H 0.004 0.996 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.365 23.676 -12.523 28.374 hybrid contribution -0.315 -1.612 0.674 1.775 sum -9.680 22.064 -11.849 26.850 Atomic orbital electron populations 1.21855 0.77761 1.03355 1.03691 1.47777 1.08111 1.06399 1.71977 1.22502 0.98749 0.83310 1.04173 1.18536 0.87444 0.83989 0.75918 1.90787 1.70541 1.33249 1.51457 1.19925 0.93397 1.04074 1.00827 1.21492 0.94239 0.95582 0.96717 1.21619 0.93906 0.99088 0.98176 1.21556 1.01615 0.92845 0.92380 1.20114 0.90740 1.00554 1.00717 1.20554 1.00921 0.94249 0.95528 1.21395 0.98886 0.93453 0.99027 1.19000 0.94480 0.94019 0.93603 1.21672 1.38755 0.96738 1.01497 0.92683 1.25976 0.95052 1.03663 0.95017 1.70081 1.41066 1.36175 1.09849 0.85513 0.78612 0.78662 0.78359 1.18756 1.20381 1.19720 1.17961 0.89447 0.93266 0.90642 1.91470 1.77464 1.75041 1.69137 0.92219 0.90172 0.89118 0.88314 0.91016 0.88600 0.80878 0.79909 0.82089 0.92725 0.88656 0.92071 0.95299 0.97790 0.99591 0.92638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.20 10.73 127.77 1.37 2.57 16 2 N -0.61 -11.95 3.27 -875.54 -2.87 -14.81 16 3 C 0.05 0.52 10.07 127.77 1.29 1.81 16 4 C 0.55 16.28 6.92 86.74 0.60 16.88 16 5 O -0.58 -23.01 16.16 -3.92 -0.06 -23.07 16 6 C -0.18 -4.77 5.05 -20.05 -0.10 -4.87 16 7 C -0.06 -1.00 7.34 22.52 0.17 -0.83 16 8 C -0.11 -1.49 10.03 22.23 0.22 -1.27 16 9 C -0.07 -1.33 9.67 22.32 0.22 -1.11 16 10 C -0.12 -3.60 5.13 -19.85 -0.10 -3.70 16 11 C -0.08 -2.70 5.12 29.84 0.15 -2.54 16 12 C -0.09 -4.03 5.13 30.59 0.16 -3.87 16 13 C 0.03 1.45 4.97 29.85 0.15 1.60 16 14 C -0.55 -33.06 9.11 25.60 0.23 -32.83 16 15 H 0.05 3.22 7.74 -2.91 -0.02 3.20 16 16 C 0.00 0.05 5.46 84.66 0.46 0.51 16 17 N -0.93 -58.41 13.29 21.45 0.28 -58.13 16 18 Si 0.96 46.06 29.54 68.60 2.03 48.09 16 19 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 20 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 21 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 22 C 0.11 3.58 7.21 22.67 0.16 3.75 16 23 F -0.15 -6.34 15.93 44.97 0.72 -5.63 16 24 H 0.06 1.33 6.91 -2.38 -0.02 1.31 16 25 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.10 0.37 8.14 -2.39 -0.02 0.36 16 28 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.10 0.88 3.91 -2.39 -0.01 0.87 16 30 H 0.17 1.45 7.09 -2.91 -0.02 1.43 16 31 H 0.18 0.84 8.06 -2.91 -0.02 0.81 16 32 H 0.16 2.50 8.06 -2.91 -0.02 2.47 16 33 H 0.05 2.11 7.79 -2.39 -0.02 2.09 16 34 H 0.09 2.99 8.05 -2.38 -0.02 2.97 16 35 H 0.06 2.57 8.14 -2.38 -0.02 2.55 16 36 H 0.03 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 38 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 39 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -83.01 332.51 6.11 -76.89 By element: Atomic # 1 Polarization: -0.46 SS G_CDS: 1.04 Total: 0.58 kcal Atomic # 6 Polarization: -28.90 SS G_CDS: 4.98 Total: -23.92 kcal Atomic # 7 Polarization: -70.36 SS G_CDS: -2.58 Total: -72.94 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -0.06 Total: -23.07 kcal Atomic # 9 Polarization: -6.34 SS G_CDS: 0.72 Total: -5.63 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -83.01 6.11 -76.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066332.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.667 kcal (2) G-P(sol) polarization free energy of solvation -83.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds