Wall clock time and date at job start Tue Mar 31 2020 01:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.28441 * 125.19707 * 2 1 4 4 C 1.30875 * 110.95412 * 180.02562 * 3 2 1 5 5 C 1.50704 * 126.06296 * 179.97438 * 4 3 2 6 6 C 1.53171 * 109.54529 * 214.58127 * 5 4 3 7 7 C 1.53100 * 109.16381 * 183.15382 * 6 5 4 8 8 O 1.42902 * 109.41464 * 57.60581 * 7 6 5 9 9 C 1.42912 * 114.09965 * 298.84619 * 8 7 6 10 10 C 1.53096 * 109.41335 * 61.15521 * 9 8 7 11 11 C 1.39648 * 107.88110 * 0.26118 * 4 3 2 12 12 C 1.36649 * 125.19425 * 179.97438 * 2 1 3 13 13 C 1.47015 * 126.89731 * 0.03422 * 12 2 1 14 14 O 1.21679 * 120.00298 * 5.31306 * 13 12 2 15 15 N 1.34780 * 120.00351 * 185.31421 * 13 12 2 16 16 C 1.36839 * 120.00057 * 185.19894 * 15 13 12 17 17 H 1.07996 * 120.00298 * 0.02562 * 16 15 13 18 18 C 1.39055 * 119.99811 * 179.97438 * 16 15 13 19 19 N 1.31359 * 120.00038 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00020 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46890 * 90.00297 * 20 18 16 22 22 H 1.48498 * 109.47423 * 210.00692 * 20 18 16 23 23 H 1.48500 * 109.47004 * 330.00775 * 20 18 16 24 24 H 1.08994 * 109.47221 * 86.07423 * 1 2 3 25 25 H 1.09002 * 109.47410 * 206.07437 * 1 2 3 26 26 H 1.08999 * 109.47017 * 326.06950 * 1 2 3 27 27 H 1.09005 * 109.61326 * 334.80449 * 5 4 3 28 28 H 1.08999 * 109.52392 * 303.05544 * 6 5 4 29 29 H 1.09000 * 109.52379 * 63.24826 * 6 5 4 30 30 H 1.09003 * 109.47643 * 297.62649 * 7 6 5 31 31 H 1.08995 * 109.47891 * 177.59263 * 7 6 5 32 32 H 1.08998 * 109.47429 * 301.17758 * 9 8 7 33 33 H 1.08992 * 109.48166 * 181.14074 * 9 8 7 34 34 H 1.09005 * 109.51752 * 182.48556 * 10 9 8 35 35 H 1.08998 * 109.51827 * 62.29993 * 10 9 8 36 36 H 1.08002 * 127.32648 * 179.74401 * 11 4 3 37 37 H 0.96994 * 119.99840 * 5.19229 * 15 13 12 38 38 H 0.97002 * 120.00025 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2053 1.0496 0.0000 4 6 3.4738 0.7276 -0.0005 5 6 4.6334 1.6901 -0.0013 6 6 5.7863 1.1028 -0.8210 7 6 6.9867 2.0506 -0.7508 8 8 7.3584 2.2460 0.6151 9 6 6.3354 2.8366 1.4195 10 6 5.1090 1.9203 1.4365 11 6 3.5624 -0.6661 -0.0070 12 6 2.2525 -1.1167 0.0005 13 6 1.8004 -2.5156 0.0004 14 8 0.6150 -2.7720 -0.0977 15 7 2.6990 -3.5143 0.1091 16 6 2.2913 -4.8161 0.0023 17 1 1.2496 -5.0434 -0.1694 18 6 3.2185 -5.8464 0.1139 19 7 4.4856 -5.5700 0.3222 20 14 2.6619 -7.6237 -0.0312 21 1 2.7309 -8.0496 -1.4522 22 1 3.5481 -8.4885 0.7884 23 1 1.2640 -7.7458 0.4548 24 1 -0.3633 0.0704 -1.0252 25 1 -0.3634 -0.9231 0.4517 26 1 -0.3633 0.8527 0.5736 27 1 4.3213 2.6387 -0.4384 28 1 6.0652 0.1312 -0.4133 29 1 5.4736 0.9873 -1.8587 30 1 6.7193 3.0092 -1.1955 31 1 7.8244 1.6172 -1.2972 32 1 6.0596 3.8054 1.0031 33 1 6.7040 2.9694 2.4365 34 1 4.3119 2.3895 2.0132 35 1 5.3742 0.9652 1.8898 36 1 4.4610 -1.2651 -0.0130 37 1 3.6347 -3.3102 0.2628 38 1 5.1324 -6.2887 0.4004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263723139.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:29 Heat of formation + Delta-G solvation = -19.462541 kcal Electronic energy + Delta-G solvation = -21728.177892 eV Core-core repulsion = 18378.863769 eV Total energy + Delta-G solvation = -3349.314123 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.01985 -39.24089 -37.95848 -34.86482 -34.11380 -32.12256 -31.42301 -31.13190 -30.08273 -27.07739 -25.32759 -24.38015 -23.56558 -22.32889 -20.94487 -19.64628 -18.84309 -18.04871 -16.72562 -16.05186 -16.03874 -15.69324 -15.48815 -14.77524 -14.76783 -14.20004 -13.96865 -13.72170 -13.50616 -13.22121 -12.89416 -12.73445 -12.50311 -12.21313 -11.87596 -11.71567 -11.29450 -11.26237 -11.20997 -10.79479 -10.51171 -10.41149 -10.36106 -10.14398 -9.72581 -9.59692 -8.69813 -8.51042 -8.40881 -8.16892 -6.62785 -3.98253 1.99034 2.94946 2.96181 3.13393 3.18049 3.23894 3.84465 4.02923 4.16654 4.52938 4.76705 4.86235 4.87642 5.00136 5.17119 5.18052 5.20314 5.33707 5.42125 5.53548 5.61738 5.63547 5.66321 5.74452 5.86133 5.92703 5.97766 6.05451 6.17935 6.20959 6.29174 6.52217 6.98842 7.15055 7.27167 7.36179 7.83781 8.37191 8.58416 8.95775 9.31123 9.82870 10.53583 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.017811 B = 0.004646 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.650296 B = 6025.121671 C = 7300.994663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.270 5.270 3 N -0.301 5.301 4 C 0.028 3.972 5 C 0.005 3.995 6 C -0.149 4.149 7 C 0.063 3.937 8 O -0.384 6.384 9 C 0.063 3.937 10 C -0.146 4.146 11 C -0.212 4.212 12 C 0.012 3.988 13 C 0.489 3.511 14 O -0.602 6.602 15 N -0.526 5.526 16 C -0.299 4.299 17 H 0.109 0.891 18 C 0.028 3.972 19 N -0.884 5.884 20 Si 0.936 3.064 21 H -0.275 1.275 22 H -0.281 1.281 23 H -0.267 1.267 24 H 0.076 0.924 25 H 0.114 0.886 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.048 0.952 31 H 0.095 0.905 32 H 0.049 0.951 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.154 0.846 37 H 0.398 0.602 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.439 13.675 -0.112 14.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.056 5.056 3 N -0.133 5.133 4 C -0.130 4.130 5 C -0.015 4.015 6 C -0.187 4.187 7 C -0.014 4.014 8 O -0.303 6.303 9 C -0.014 4.014 10 C -0.185 4.185 11 C -0.241 4.241 12 C -0.117 4.117 13 C 0.276 3.724 14 O -0.490 6.490 15 N -0.159 5.159 16 C -0.429 4.429 17 H 0.127 0.873 18 C -0.177 4.177 19 N -0.523 5.523 20 Si 0.762 3.238 21 H -0.201 1.201 22 H -0.206 1.206 23 H -0.191 1.191 24 H 0.094 0.906 25 H 0.133 0.867 26 H 0.099 0.901 27 H 0.097 0.903 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.067 0.933 31 H 0.113 0.887 32 H 0.067 0.933 33 H 0.111 0.889 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.172 0.828 37 H 0.232 0.768 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.090 14.214 -0.092 14.367 hybrid contribution 0.467 -1.410 -0.139 1.492 sum 2.557 12.804 -0.231 13.059 Atomic orbital electron populations 1.22221 0.73165 1.05558 1.03863 1.45349 1.07389 1.01860 1.51028 1.72933 1.03535 1.14167 1.22624 1.21564 0.91323 0.93400 1.06682 1.19323 0.90113 0.96211 0.95894 1.22250 0.94757 1.00587 1.01111 1.22593 0.97585 0.98101 0.83125 1.87929 1.39030 1.82626 1.20705 1.22584 0.88279 0.94829 0.95700 1.22237 0.97990 1.01602 0.96630 1.21983 0.96003 0.94366 1.11778 1.21923 0.90586 0.90681 1.08461 1.16461 0.86457 0.82258 0.87242 1.90587 1.16070 1.83757 1.58598 1.41611 1.09820 1.05240 1.59237 1.19807 0.96460 0.80451 1.46217 0.87309 1.25408 0.94813 1.01042 0.96417 1.69595 1.01557 1.34597 1.46577 0.85760 0.78880 0.80656 0.78484 1.20074 1.20622 1.19122 0.90578 0.86738 0.90067 0.90268 0.90032 0.90514 0.93345 0.88727 0.93320 0.88904 0.90798 0.90411 0.82822 0.76798 0.91256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.46 10.88 59.84 0.65 2.11 16 2 N -0.27 -5.16 3.75 -63.89 -0.24 -5.40 16 3 N -0.30 -5.48 11.90 33.63 0.40 -5.08 16 4 C 0.03 0.47 6.14 -82.47 -0.51 -0.04 16 5 C 0.00 0.06 2.74 -91.59 -0.25 -0.19 16 6 C -0.15 -1.77 5.07 -26.59 -0.13 -1.90 16 7 C 0.06 0.65 6.84 37.21 0.25 0.90 16 8 O -0.38 -4.66 10.77 -35.23 -0.38 -5.04 16 9 C 0.06 0.65 6.84 37.21 0.25 0.90 16 10 C -0.15 -1.74 5.40 -26.59 -0.14 -1.89 16 11 C -0.21 -3.96 9.63 -38.95 -0.37 -4.34 16 12 C 0.01 0.26 6.96 -82.06 -0.57 -0.31 16 13 C 0.49 11.98 7.73 -12.70 -0.10 11.88 16 14 O -0.60 -15.94 14.26 5.21 0.07 -15.86 16 15 N -0.53 -13.33 5.26 -12.08 -0.06 -13.40 16 16 C -0.30 -8.07 9.67 -15.01 -0.15 -8.21 16 17 H 0.11 3.03 7.16 -52.49 -0.38 2.66 16 18 C 0.03 0.71 5.50 -17.45 -0.10 0.61 16 19 N -0.88 -23.06 13.05 55.50 0.72 -22.33 16 20 Si 0.94 20.04 29.55 -169.99 -5.02 15.01 16 21 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 22 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 23 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 24 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 25 H 0.11 1.99 6.21 -51.93 -0.32 1.67 16 26 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.08 1.06 7.21 -51.93 -0.37 0.68 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.15 2.70 7.00 -52.49 -0.37 2.33 16 37 H 0.40 9.70 6.98 -40.82 -0.28 9.41 16 38 H 0.28 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 317.56 15.07 4.79 4.79 Total: -1.00 -30.59 317.56 -5.97 -36.56 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -5.09 Total: 11.22 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -1.16 Total: -0.46 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: 0.82 Total: -46.21 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.31 Total: -20.91 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.59 -5.97 -36.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263723139.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.093 kcal (2) G-P(sol) polarization free energy of solvation -30.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds