Wall clock time and date at job start Tue Mar 31 2020 01:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.28441 * 125.19707 * 2 1 4 4 C 1.30875 * 110.95412 * 180.02562 * 3 2 1 5 5 C 1.50704 * 126.06296 * 179.97438 * 4 3 2 6 6 C 1.53171 * 109.54529 * 214.58127 * 5 4 3 7 7 C 1.53100 * 109.16381 * 183.15382 * 6 5 4 8 8 O 1.42902 * 109.41464 * 57.60581 * 7 6 5 9 9 C 1.42912 * 114.09965 * 298.84619 * 8 7 6 10 10 C 1.53096 * 109.41335 * 61.15521 * 9 8 7 11 11 C 1.39648 * 107.88110 * 0.26118 * 4 3 2 12 12 C 1.36649 * 125.19425 * 179.97438 * 2 1 3 13 13 C 1.47015 * 126.89731 * 0.03422 * 12 2 1 14 14 O 1.21679 * 120.00298 * 5.31306 * 13 12 2 15 15 N 1.34780 * 120.00351 * 185.31421 * 13 12 2 16 16 C 1.36839 * 120.00057 * 185.19894 * 15 13 12 17 17 H 1.07996 * 120.00298 * 0.02562 * 16 15 13 18 18 C 1.39055 * 119.99811 * 179.97438 * 16 15 13 19 19 N 1.31359 * 120.00038 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00020 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46890 * 90.00297 * 20 18 16 22 22 H 1.48498 * 109.47423 * 210.00692 * 20 18 16 23 23 H 1.48500 * 109.47004 * 330.00775 * 20 18 16 24 24 H 1.08994 * 109.47221 * 86.07423 * 1 2 3 25 25 H 1.09002 * 109.47410 * 206.07437 * 1 2 3 26 26 H 1.08999 * 109.47017 * 326.06950 * 1 2 3 27 27 H 1.09005 * 109.61326 * 334.80449 * 5 4 3 28 28 H 1.08999 * 109.52392 * 303.05544 * 6 5 4 29 29 H 1.09000 * 109.52379 * 63.24826 * 6 5 4 30 30 H 1.09003 * 109.47643 * 297.62649 * 7 6 5 31 31 H 1.08995 * 109.47891 * 177.59263 * 7 6 5 32 32 H 1.08998 * 109.47429 * 301.17758 * 9 8 7 33 33 H 1.08992 * 109.48166 * 181.14074 * 9 8 7 34 34 H 1.09005 * 109.51752 * 182.48556 * 10 9 8 35 35 H 1.08998 * 109.51827 * 62.29993 * 10 9 8 36 36 H 1.08002 * 127.32648 * 179.74401 * 11 4 3 37 37 H 0.96994 * 119.99840 * 5.19229 * 15 13 12 38 38 H 0.97002 * 120.00025 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2053 1.0496 0.0000 4 6 3.4738 0.7276 -0.0005 5 6 4.6334 1.6901 -0.0013 6 6 5.7863 1.1028 -0.8210 7 6 6.9867 2.0506 -0.7508 8 8 7.3584 2.2460 0.6151 9 6 6.3354 2.8366 1.4195 10 6 5.1090 1.9203 1.4365 11 6 3.5624 -0.6661 -0.0070 12 6 2.2525 -1.1167 0.0005 13 6 1.8004 -2.5156 0.0004 14 8 0.6150 -2.7720 -0.0977 15 7 2.6990 -3.5143 0.1091 16 6 2.2913 -4.8161 0.0023 17 1 1.2496 -5.0434 -0.1694 18 6 3.2185 -5.8464 0.1139 19 7 4.4856 -5.5700 0.3222 20 14 2.6619 -7.6237 -0.0312 21 1 2.7309 -8.0496 -1.4522 22 1 3.5481 -8.4885 0.7884 23 1 1.2640 -7.7458 0.4548 24 1 -0.3633 0.0704 -1.0252 25 1 -0.3634 -0.9231 0.4517 26 1 -0.3633 0.8527 0.5736 27 1 4.3213 2.6387 -0.4384 28 1 6.0652 0.1312 -0.4133 29 1 5.4736 0.9873 -1.8587 30 1 6.7193 3.0092 -1.1955 31 1 7.8244 1.6172 -1.2972 32 1 6.0596 3.8054 1.0031 33 1 6.7040 2.9694 2.4365 34 1 4.3119 2.3895 2.0132 35 1 5.3742 0.9652 1.8898 36 1 4.4610 -1.2651 -0.0130 37 1 3.6347 -3.3102 0.2628 38 1 5.1324 -6.2887 0.4004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263723139.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:28 Heat of formation + Delta-G solvation = -40.218347 kcal Electronic energy + Delta-G solvation = -21729.077931 eV Core-core repulsion = 18378.863769 eV Total energy + Delta-G solvation = -3350.214162 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.50545 -40.20434 -39.84638 -36.32591 -35.75736 -33.72183 -33.03682 -32.03519 -31.67390 -28.29473 -27.25802 -25.50999 -24.51587 -23.91530 -22.31474 -20.87708 -20.57314 -19.74174 -18.42043 -17.28383 -17.25476 -16.90598 -16.81214 -16.49134 -15.88118 -15.60399 -15.42880 -15.19837 -14.96473 -14.69184 -14.35733 -13.97524 -13.65237 -13.60509 -13.24099 -13.15223 -12.97108 -12.50684 -12.37481 -12.18706 -12.12614 -11.80411 -11.63913 -11.54823 -11.19184 -10.65809 -10.47314 -10.22253 -10.02224 -9.81957 -8.58505 -6.04634 0.34643 1.41336 1.41721 1.51141 1.56923 1.59057 2.25533 2.31073 2.96436 3.06185 3.18934 3.37526 3.76307 3.95399 4.01126 4.06536 4.13126 4.30361 4.35207 4.38067 4.39527 4.51751 4.57788 4.67476 4.74396 4.82581 4.86874 4.93856 4.98689 5.16091 5.23546 5.31914 5.43086 5.53279 5.81410 5.84319 6.34970 6.40889 6.94598 7.09372 7.34723 7.86846 8.58375 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.017811 B = 0.004646 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.650296 B = 6025.121671 C = 7300.994663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.272 5.272 3 N -0.296 5.296 4 C 0.033 3.967 5 C 0.006 3.994 6 C -0.147 4.147 7 C 0.064 3.936 8 O -0.403 6.403 9 C 0.064 3.936 10 C -0.143 4.143 11 C -0.203 4.203 12 C -0.022 4.022 13 C 0.492 3.508 14 O -0.628 6.628 15 N -0.535 5.535 16 C -0.337 4.337 17 H 0.090 0.910 18 C -0.005 4.005 19 N -0.906 5.906 20 Si 1.001 2.999 21 H -0.267 1.267 22 H -0.269 1.269 23 H -0.269 1.269 24 H 0.089 0.911 25 H 0.093 0.907 26 H 0.114 0.886 27 H 0.094 0.906 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.107 0.893 32 H 0.068 0.932 33 H 0.106 0.894 34 H 0.077 0.923 35 H 0.059 0.941 36 H 0.159 0.841 37 H 0.399 0.601 38 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.279 15.022 -0.292 15.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.058 5.058 3 N -0.128 5.128 4 C -0.124 4.124 5 C -0.015 4.015 6 C -0.186 4.186 7 C -0.012 4.012 8 O -0.322 6.322 9 C -0.012 4.012 10 C -0.181 4.181 11 C -0.232 4.232 12 C -0.151 4.151 13 C 0.279 3.721 14 O -0.517 6.517 15 N -0.168 5.168 16 C -0.467 4.467 17 H 0.108 0.892 18 C -0.207 4.207 19 N -0.545 5.545 20 Si 0.823 3.177 21 H -0.192 1.192 22 H -0.193 1.193 23 H -0.194 1.194 24 H 0.108 0.892 25 H 0.112 0.888 26 H 0.133 0.867 27 H 0.113 0.887 28 H 0.084 0.916 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.125 0.875 32 H 0.086 0.914 33 H 0.125 0.875 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.177 0.823 37 H 0.234 0.766 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.941 15.576 -0.270 15.854 hybrid contribution 0.196 -1.691 -0.079 1.704 sum 3.136 13.885 -0.349 14.239 Atomic orbital electron populations 1.22388 0.71686 1.05943 1.05159 1.45657 1.08393 1.01296 1.50471 1.72966 1.04026 1.13618 1.22238 1.22147 0.91935 0.93247 1.05061 1.19502 0.88985 0.95841 0.97128 1.22241 0.95114 1.00312 1.00884 1.22685 0.97171 0.98648 0.82739 1.87914 1.39826 1.82902 1.21570 1.22682 0.87074 0.94896 0.96548 1.22205 0.99029 1.01306 0.95577 1.22169 0.95309 0.95506 1.10243 1.21573 0.92026 0.89702 1.11785 1.16911 0.85994 0.83524 0.85665 1.90552 1.17166 1.84696 1.59319 1.41604 1.09957 1.05170 1.60107 1.19813 0.96136 0.81732 1.48978 0.89209 1.26223 0.94694 1.04603 0.95214 1.69653 1.02278 1.36054 1.46518 0.84811 0.78361 0.75641 0.78842 1.19239 1.19309 1.19356 0.89244 0.88808 0.86749 0.88745 0.91618 0.90195 0.91382 0.87538 0.91360 0.87546 0.90458 0.92184 0.82307 0.76610 0.90602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.71 10.88 127.77 1.39 4.10 16 2 N -0.27 -10.23 3.75 -356.05 -1.34 -11.56 16 3 N -0.30 -10.34 11.90 -47.50 -0.57 -10.90 16 4 C 0.03 1.08 6.14 43.04 0.26 1.35 16 5 C 0.01 0.13 2.74 -11.42 -0.03 0.10 16 6 C -0.15 -3.24 5.07 30.69 0.16 -3.09 16 7 C 0.06 1.16 6.84 72.02 0.49 1.65 16 8 O -0.40 -8.80 10.77 -148.98 -1.60 -10.41 16 9 C 0.06 1.15 6.84 72.01 0.49 1.64 16 10 C -0.14 -3.13 5.40 30.69 0.17 -2.96 16 11 C -0.20 -7.57 9.63 22.68 0.22 -7.35 16 12 C -0.02 -0.94 6.96 40.76 0.28 -0.66 16 13 C 0.49 24.89 7.73 86.54 0.67 25.56 16 14 O -0.63 -34.47 14.26 -4.28 -0.06 -34.53 16 15 N -0.53 -28.09 5.26 -310.34 -1.63 -29.72 16 16 C -0.34 -18.76 9.67 84.11 0.81 -17.94 16 17 H 0.09 5.23 7.16 -2.91 -0.02 5.21 16 18 C -0.01 -0.26 5.50 84.96 0.47 0.21 16 19 N -0.91 -47.51 13.05 21.68 0.28 -47.23 16 20 Si 1.00 41.07 29.55 68.60 2.03 43.09 16 21 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 22 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 23 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 24 H 0.09 2.50 8.14 -2.39 -0.02 2.49 16 25 H 0.09 3.33 6.21 -2.39 -0.01 3.31 16 26 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 27 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 28 H 0.07 1.65 7.21 -2.39 -0.02 1.63 16 29 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 35 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.16 5.66 7.00 -2.91 -0.02 5.64 16 37 H 0.40 20.17 6.98 -92.71 -0.65 19.52 16 38 H 0.28 13.80 8.31 -92.71 -0.77 13.03 16 Total: -1.00 -66.03 317.56 2.93 -63.10 By element: Atomic # 1 Polarization: 35.13 SS G_CDS: 0.44 Total: 35.57 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: 5.38 Total: 2.59 kcal Atomic # 7 Polarization: -96.17 SS G_CDS: -3.25 Total: -99.42 kcal Atomic # 8 Polarization: -43.27 SS G_CDS: -1.66 Total: -44.94 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.09 kcal Total: -66.03 2.93 -63.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263723139.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.881 kcal (2) G-P(sol) polarization free energy of solvation -66.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds