Wall clock time and date at job start Tue Mar 31 2020 00:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47259 * 2 1 4 4 C 1.36942 * 120.00045 * 275.31636 * 3 2 1 5 5 H 1.07998 * 119.99662 * 37.57494 * 4 3 2 6 6 C 1.38806 * 119.99731 * 217.57375 * 4 3 2 7 7 N 1.31621 * 120.00414 * 21.42938 * 6 4 3 8 8 Si 1.86800 * 119.99942 * 201.42231 * 6 4 3 9 9 H 1.48499 * 109.47018 * 90.00606 * 8 6 4 10 10 H 1.48503 * 109.47066 * 210.00058 * 8 6 4 11 11 H 1.48491 * 109.47183 * 330.00381 * 8 6 4 12 12 C 1.46504 * 119.99996 * 95.30951 * 3 2 1 13 13 C 1.52999 * 109.47185 * 270.00192 * 12 3 2 14 14 N 1.46495 * 109.46886 * 179.97438 * 13 12 3 15 15 C 1.34783 * 120.00066 * 180.27815 * 14 13 12 16 16 O 1.21579 * 119.99695 * 359.72389 * 15 14 13 17 17 C 1.47607 * 120.00259 * 179.73173 * 15 14 13 18 18 C 1.40282 * 120.50169 * 179.97438 * 17 15 14 19 19 C 1.37958 * 118.36239 * 179.97438 * 18 17 15 20 20 C 1.39167 * 119.25726 * 359.97438 * 19 18 17 21 21 O 1.35502 * 119.52198 * 179.97438 * 20 19 18 22 22 N 1.32407 * 120.95540 * 0.02562 * 20 19 18 23 23 C 1.31669 * 121.79413 * 359.69833 * 22 20 19 24 24 H 1.09001 * 109.46893 * 299.99572 * 1 2 3 25 25 H 1.09000 * 109.47647 * 60.00045 * 1 2 3 26 26 H 1.09008 * 109.47219 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46893 * 240.00428 * 2 1 3 28 28 H 1.09001 * 109.47081 * 120.00463 * 2 1 3 29 29 H 0.96993 * 120.00508 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.46603 * 150.00299 * 12 3 2 31 31 H 1.09000 * 109.46677 * 30.00674 * 12 3 2 32 32 H 1.08999 * 109.46874 * 60.00152 * 13 12 3 33 33 H 1.08995 * 109.47233 * 300.00362 * 13 12 3 34 34 H 0.97003 * 120.00242 * 0.02562 * 14 13 12 35 35 H 1.08005 * 120.81998 * 0.02562 * 18 17 15 36 36 H 1.07995 * 120.36950 * 180.02562 * 19 18 17 37 37 H 0.96698 * 114.00179 * 90.00368 * 21 20 19 38 38 H 1.07999 * 119.68755 * 180.28737 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1430 2.0634 -1.1808 5 1 1.4103 1.9278 -1.9626 6 6 3.2110 2.9290 -1.3728 7 7 4.3026 2.7981 -0.6492 8 14 3.0991 4.2795 -2.6585 9 1 2.5374 5.5069 -2.0394 10 1 4.4547 4.5697 -3.1909 11 1 2.2164 3.8358 -3.7670 12 6 2.3732 2.0327 1.2633 13 6 1.1426 2.7382 1.8366 14 7 1.4974 3.3891 3.1002 15 6 0.5635 4.0714 3.7922 16 8 -0.5721 4.1509 3.3653 17 6 0.9195 4.7223 5.0683 18 6 -0.0441 5.4355 5.7970 19 6 0.3367 6.0259 6.9843 20 6 1.6528 5.8956 7.4174 21 8 2.0327 6.4738 8.5825 22 7 2.5394 5.2156 6.7069 23 6 2.2178 4.6320 5.5713 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 5.0490 3.4027 -0.7836 30 1 3.1617 2.7641 1.0859 31 1 2.7256 1.2832 1.9721 32 1 0.3542 2.0068 2.0140 33 1 0.7903 3.4875 1.1278 34 1 2.4035 3.3260 3.4406 35 1 -1.0591 5.5196 5.4377 36 1 -0.3789 6.5823 7.5714 37 1 1.9264 5.9046 9.3570 38 1 2.9672 4.0819 5.0216 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266434552.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:18 Heat of formation + Delta-G solvation = -20.021174 kcal Electronic energy + Delta-G solvation = -21199.058807 eV Core-core repulsion = 17849.720461 eV Total energy + Delta-G solvation = -3349.338347 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.87507 -39.16637 -37.21370 -36.34155 -34.28918 -32.78404 -31.91747 -31.10923 -29.44104 -27.50368 -24.69986 -24.13000 -23.68251 -21.83982 -20.68012 -20.22840 -19.16410 -17.90847 -17.18014 -16.57978 -16.16186 -15.27971 -15.24110 -15.01465 -14.72578 -14.13365 -13.91675 -13.68430 -13.37528 -13.25689 -12.91343 -12.60821 -12.41754 -12.17991 -12.08789 -11.55549 -11.15009 -10.80260 -10.69211 -10.53090 -10.23463 -10.20023 -10.05114 -9.92451 -9.79643 -9.54356 -9.25847 -8.64626 -8.50462 -6.66482 -5.86882 -3.45946 0.33849 0.91128 2.76197 3.27038 3.32059 3.38112 3.41976 3.44064 3.66397 4.30703 4.43647 4.55623 4.63502 4.85370 4.98699 5.24004 5.27616 5.50130 5.62589 5.79962 5.95584 6.05721 6.10293 6.11792 6.35122 6.37423 6.46207 6.65060 6.74638 6.88703 6.95812 7.10106 7.13395 7.48367 7.52746 7.76502 7.78021 8.38573 8.45324 9.11227 9.72951 10.30735 11.13343 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.019986 B = 0.003930 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.613044 B = 7123.792744 C = 7716.912293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.141 3.859 3 N -0.579 5.579 4 C -0.263 4.263 5 H 0.062 0.938 6 C 0.015 3.985 7 N -0.887 5.887 8 Si 0.897 3.103 9 H -0.285 1.285 10 H -0.290 1.290 11 H -0.276 1.276 12 C 0.137 3.863 13 C 0.096 3.904 14 N -0.711 5.711 15 C 0.556 3.444 16 O -0.541 6.541 17 C -0.190 4.190 18 C -0.004 4.004 19 C -0.193 4.193 20 C 0.326 3.674 21 O -0.482 6.482 22 N -0.505 5.505 23 C 0.161 3.839 24 H 0.044 0.956 25 H 0.050 0.950 26 H 0.037 0.963 27 H 0.046 0.954 28 H 0.035 0.965 29 H 0.256 0.744 30 H 0.099 0.901 31 H 0.030 0.970 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.397 0.603 35 H 0.153 0.847 36 H 0.147 0.853 37 H 0.403 0.597 38 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.158 2.417 16.023 17.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.300 5.300 4 C -0.392 4.392 5 H 0.080 0.920 6 C -0.186 4.186 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.212 1.212 10 H -0.217 1.217 11 H -0.201 1.201 12 C 0.009 3.991 13 C -0.029 4.029 14 N -0.362 5.362 15 C 0.341 3.659 16 O -0.419 6.419 17 C -0.195 4.195 18 C -0.030 4.030 19 C -0.214 4.214 20 C 0.148 3.852 21 O -0.289 6.289 22 N -0.224 5.224 23 C 0.002 3.998 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.117 0.883 31 H 0.048 0.952 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.231 0.769 35 H 0.171 0.829 36 H 0.165 0.835 37 H 0.262 0.738 38 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -4.814 2.956 15.656 16.644 hybrid contribution -0.505 0.539 -0.387 0.834 sum -5.319 3.495 15.269 16.543 Atomic orbital electron populations 1.22392 0.99902 0.99107 1.01391 1.20884 0.91761 0.86935 0.98942 1.43610 1.76041 1.08296 1.02048 1.19040 1.04851 1.21328 0.93994 0.92004 1.25180 0.94119 1.01159 0.98116 1.69985 1.03153 1.37239 1.42533 0.86388 0.76980 0.82556 0.81478 1.21203 1.21663 1.20130 1.21071 0.94487 0.97019 0.86532 1.22563 1.01357 0.96645 0.82321 1.46090 1.12806 1.52783 1.24480 1.17912 0.85469 0.79044 0.83499 1.90775 1.20217 1.61179 1.69777 1.21209 0.96117 1.03968 0.98214 1.21664 1.00249 0.89929 0.91199 1.22092 0.96286 1.03882 0.99186 1.19414 0.87670 0.89955 0.88176 1.84724 1.88212 1.41237 1.14765 1.67177 1.37379 1.09557 1.08262 1.22831 0.93961 0.92956 0.90059 0.93690 0.93084 0.94434 0.93532 0.94704 0.93448 0.88331 0.95180 0.92666 0.91429 0.76871 0.82946 0.83515 0.73839 0.81569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.05 10.21 37.16 0.38 -2.67 16 2 C 0.14 2.88 6.44 -4.05 -0.03 2.86 16 3 N -0.58 -13.77 2.43 -173.24 -0.42 -14.19 16 4 C -0.26 -6.94 9.45 -15.06 -0.14 -7.08 16 5 H 0.06 1.65 7.92 -52.49 -0.42 1.24 16 6 C 0.01 0.39 4.95 -17.43 -0.09 0.31 16 7 N -0.89 -24.37 11.47 55.49 0.64 -23.73 16 8 Si 0.90 21.20 29.60 -169.99 -5.03 16.17 16 9 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 C 0.14 2.93 5.45 -4.04 -0.02 2.91 16 13 C 0.10 1.88 6.00 -4.05 -0.02 1.85 16 14 N -0.71 -11.40 5.51 -61.33 -0.34 -11.73 16 15 C 0.56 9.04 7.77 -12.43 -0.10 8.94 16 16 O -0.54 -10.67 16.41 5.30 0.09 -10.58 16 17 C -0.19 -2.47 5.89 -104.83 -0.62 -3.08 16 18 C 0.00 -0.05 9.70 -38.92 -0.38 -0.43 16 19 C -0.19 -1.83 10.02 -39.34 -0.39 -2.23 16 20 C 0.33 3.53 7.74 -16.96 -0.13 3.40 16 21 O -0.48 -4.27 13.55 -18.20 -0.25 -4.51 16 22 N -0.51 -6.30 10.37 -12.96 -0.13 -6.44 16 23 C 0.16 1.91 10.71 -17.14 -0.18 1.72 16 24 H 0.04 0.82 6.64 -51.93 -0.34 0.47 16 25 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 26 H 0.04 0.58 8.14 -51.92 -0.42 0.15 16 27 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 28 H 0.03 0.66 7.83 -51.93 -0.41 0.25 16 29 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 30 H 0.10 2.39 5.52 -51.93 -0.29 2.10 16 31 H 0.03 0.60 7.86 -51.93 -0.41 0.19 16 32 H 0.06 1.10 6.64 -51.93 -0.34 0.75 16 33 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 34 H 0.40 5.27 6.53 -40.82 -0.27 5.00 16 35 H 0.15 1.62 7.73 -52.48 -0.41 1.21 16 36 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.40 1.41 9.06 45.56 0.41 1.82 16 38 H 0.17 1.63 6.41 -52.49 -0.34 1.29 16 LS Contribution 326.01 15.07 4.91 4.91 Total: -1.00 -32.54 326.01 -6.31 -38.85 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -4.05 Total: 4.74 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: -1.72 Total: 6.50 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: -0.26 Total: -56.09 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -0.16 Total: -15.10 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.54 -6.31 -38.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266434552.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.828 kcal (2) G-P(sol) polarization free energy of solvation -32.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds