Wall clock time and date at job start Tue Mar 31 2020 00:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47259 * 2 1 4 4 C 1.36942 * 120.00045 * 275.31636 * 3 2 1 5 5 H 1.07998 * 119.99662 * 37.57494 * 4 3 2 6 6 C 1.38806 * 119.99731 * 217.57375 * 4 3 2 7 7 N 1.31621 * 120.00414 * 21.42938 * 6 4 3 8 8 Si 1.86800 * 119.99942 * 201.42231 * 6 4 3 9 9 H 1.48499 * 109.47018 * 90.00606 * 8 6 4 10 10 H 1.48503 * 109.47066 * 210.00058 * 8 6 4 11 11 H 1.48491 * 109.47183 * 330.00381 * 8 6 4 12 12 C 1.46504 * 119.99996 * 95.30951 * 3 2 1 13 13 C 1.52999 * 109.47185 * 270.00192 * 12 3 2 14 14 N 1.46495 * 109.46886 * 179.97438 * 13 12 3 15 15 C 1.34783 * 120.00066 * 180.27815 * 14 13 12 16 16 O 1.21579 * 119.99695 * 359.72389 * 15 14 13 17 17 C 1.47607 * 120.00259 * 179.73173 * 15 14 13 18 18 C 1.40282 * 120.50169 * 179.97438 * 17 15 14 19 19 C 1.37958 * 118.36239 * 179.97438 * 18 17 15 20 20 C 1.39167 * 119.25726 * 359.97438 * 19 18 17 21 21 O 1.35502 * 119.52198 * 179.97438 * 20 19 18 22 22 N 1.32407 * 120.95540 * 0.02562 * 20 19 18 23 23 C 1.31669 * 121.79413 * 359.69833 * 22 20 19 24 24 H 1.09001 * 109.46893 * 299.99572 * 1 2 3 25 25 H 1.09000 * 109.47647 * 60.00045 * 1 2 3 26 26 H 1.09008 * 109.47219 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46893 * 240.00428 * 2 1 3 28 28 H 1.09001 * 109.47081 * 120.00463 * 2 1 3 29 29 H 0.96993 * 120.00508 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.46603 * 150.00299 * 12 3 2 31 31 H 1.09000 * 109.46677 * 30.00674 * 12 3 2 32 32 H 1.08999 * 109.46874 * 60.00152 * 13 12 3 33 33 H 1.08995 * 109.47233 * 300.00362 * 13 12 3 34 34 H 0.97003 * 120.00242 * 0.02562 * 14 13 12 35 35 H 1.08005 * 120.81998 * 0.02562 * 18 17 15 36 36 H 1.07995 * 120.36950 * 180.02562 * 19 18 17 37 37 H 0.96698 * 114.00179 * 90.00368 * 21 20 19 38 38 H 1.07999 * 119.68755 * 180.28737 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1430 2.0634 -1.1808 5 1 1.4103 1.9278 -1.9626 6 6 3.2110 2.9290 -1.3728 7 7 4.3026 2.7981 -0.6492 8 14 3.0991 4.2795 -2.6585 9 1 2.5374 5.5069 -2.0394 10 1 4.4547 4.5697 -3.1909 11 1 2.2164 3.8358 -3.7670 12 6 2.3732 2.0327 1.2633 13 6 1.1426 2.7382 1.8366 14 7 1.4974 3.3891 3.1002 15 6 0.5635 4.0714 3.7922 16 8 -0.5721 4.1509 3.3653 17 6 0.9195 4.7223 5.0683 18 6 -0.0441 5.4355 5.7970 19 6 0.3367 6.0259 6.9843 20 6 1.6528 5.8956 7.4174 21 8 2.0327 6.4738 8.5825 22 7 2.5394 5.2156 6.7069 23 6 2.2178 4.6320 5.5713 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 5.0490 3.4027 -0.7836 30 1 3.1617 2.7641 1.0859 31 1 2.7256 1.2832 1.9721 32 1 0.3542 2.0068 2.0140 33 1 0.7903 3.4875 1.1278 34 1 2.4035 3.3260 3.4406 35 1 -1.0591 5.5196 5.4377 36 1 -0.3789 6.5823 7.5714 37 1 1.9264 5.9046 9.3570 38 1 2.9672 4.0819 5.0216 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266434552.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:17 Heat of formation + Delta-G solvation = -45.814402 kcal Electronic energy + Delta-G solvation = -21200.177286 eV Core-core repulsion = 17849.720461 eV Total energy + Delta-G solvation = -3350.456825 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.82204 -40.37531 -38.18602 -37.91030 -35.77161 -33.82939 -33.68122 -32.22673 -30.93552 -29.15372 -26.30600 -25.28015 -24.70501 -23.32413 -22.17990 -21.76006 -19.92649 -19.20860 -18.38349 -18.09673 -17.03273 -16.98253 -16.59377 -16.40722 -15.88183 -15.66552 -15.39840 -15.14954 -14.48080 -14.35559 -14.15251 -14.06514 -13.78399 -13.67049 -13.23040 -13.01729 -12.90634 -12.64426 -12.37625 -12.28844 -12.03001 -11.67876 -11.53151 -11.27126 -11.11094 -10.55989 -10.54840 -10.25145 -9.95388 -8.59729 -7.85874 -5.48767 -0.57098 0.07191 1.44044 1.48561 1.54813 1.67746 2.06595 2.47160 2.50379 2.69696 3.21750 3.45342 3.61282 3.72986 3.80632 3.94134 4.17978 4.32515 4.41094 4.48637 4.54523 4.73242 4.81416 4.83294 4.86060 4.98037 5.10107 5.21500 5.30393 5.30765 5.36388 5.57863 5.66597 5.75012 6.43106 6.48749 6.52285 6.74685 7.09945 7.16758 7.83219 8.34986 9.09939 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.019986 B = 0.003930 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.613044 B = 7123.792744 C = 7716.912293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.136 3.864 3 N -0.597 5.597 4 C -0.271 4.271 5 H 0.052 0.948 6 C -0.026 4.026 7 N -0.910 5.910 8 Si 0.949 3.051 9 H -0.290 1.290 10 H -0.290 1.290 11 H -0.271 1.271 12 C 0.143 3.857 13 C 0.118 3.882 14 N -0.706 5.706 15 C 0.559 3.441 16 O -0.581 6.581 17 C -0.207 4.207 18 C -0.005 4.005 19 C -0.180 4.180 20 C 0.331 3.669 21 O -0.487 6.487 22 N -0.528 5.528 23 C 0.165 3.835 24 H 0.042 0.958 25 H 0.034 0.966 26 H 0.068 0.932 27 H 0.036 0.964 28 H 0.053 0.947 29 H 0.254 0.746 30 H 0.074 0.926 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.033 0.967 34 H 0.411 0.589 35 H 0.157 0.843 36 H 0.180 0.820 37 H 0.427 0.573 38 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.552 2.705 17.772 18.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.011 3.989 3 N -0.319 5.319 4 C -0.401 4.401 5 H 0.070 0.930 6 C -0.224 4.224 7 N -0.553 5.553 8 Si 0.778 3.222 9 H -0.217 1.217 10 H -0.216 1.216 11 H -0.196 1.196 12 C 0.016 3.984 13 C -0.008 4.008 14 N -0.357 5.357 15 C 0.346 3.654 16 O -0.462 6.462 17 C -0.213 4.213 18 C -0.031 4.031 19 C -0.201 4.201 20 C 0.152 3.848 21 O -0.298 6.298 22 N -0.247 5.247 23 C 0.007 3.993 24 H 0.061 0.939 25 H 0.053 0.947 26 H 0.087 0.913 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.092 0.908 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.051 0.949 34 H 0.248 0.752 35 H 0.174 0.826 36 H 0.197 0.803 37 H 0.290 0.710 38 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -5.198 3.224 17.451 18.492 hybrid contribution -0.389 0.447 -0.791 0.989 sum -5.587 3.672 16.659 17.951 Atomic orbital electron populations 1.22220 0.97946 1.00864 1.00430 1.21018 0.93192 0.85379 0.99318 1.43855 1.76388 1.09661 1.01974 1.19176 1.04400 1.21761 0.94801 0.92999 1.25724 0.93997 1.02744 0.99953 1.70071 1.03522 1.37861 1.43851 0.85564 0.76761 0.80153 0.79768 1.21671 1.21600 1.19610 1.20945 0.94322 0.96861 0.86267 1.22015 1.00202 0.95513 0.83043 1.45893 1.13757 1.52671 1.23365 1.18339 0.84641 0.78208 0.84181 1.90748 1.21807 1.62633 1.71015 1.20929 0.97334 1.05735 0.97259 1.21818 1.00154 0.89578 0.91599 1.22320 0.96377 1.03049 0.98360 1.19674 0.87860 0.88726 0.88515 1.84676 1.88136 1.41908 1.15101 1.67235 1.38250 1.10627 1.08635 1.22966 0.93701 0.92667 0.89980 0.93914 0.94710 0.91271 0.94533 0.92882 0.93678 0.90841 0.93392 0.92769 0.94854 0.75200 0.82582 0.80253 0.71020 0.80274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.44 10.21 71.98 0.73 -4.70 16 2 C 0.14 5.47 6.44 86.38 0.56 6.02 16 3 N -0.60 -28.51 2.43 -702.01 -1.71 -30.21 16 4 C -0.27 -14.51 9.45 84.03 0.79 -13.72 16 5 H 0.05 2.83 7.92 -2.91 -0.02 2.81 16 6 C -0.03 -1.39 4.95 84.86 0.42 -0.97 16 7 N -0.91 -50.49 11.47 21.65 0.25 -50.25 16 8 Si 0.95 44.06 29.60 68.60 2.03 46.10 16 9 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 10 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 11 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 12 C 0.14 6.18 5.45 86.38 0.47 6.65 16 13 C 0.12 4.68 6.00 86.38 0.52 5.20 16 14 N -0.71 -22.56 5.51 -466.21 -2.57 -25.13 16 15 C 0.56 18.14 7.77 86.72 0.67 18.81 16 16 O -0.58 -23.17 16.41 -3.96 -0.07 -23.24 16 17 C -0.21 -5.19 5.89 -20.00 -0.12 -5.31 16 18 C -0.01 -0.11 9.70 22.70 0.22 0.11 16 19 C -0.18 -2.91 10.02 22.43 0.22 -2.68 16 20 C 0.33 6.28 7.74 84.83 0.66 6.94 16 21 O -0.49 -7.14 13.55 -88.03 -1.19 -8.33 16 22 N -0.53 -12.19 10.37 -307.81 -3.19 -15.38 16 23 C 0.17 3.71 10.71 85.03 0.91 4.62 16 24 H 0.04 1.50 6.64 -2.39 -0.02 1.48 16 25 H 0.03 1.30 8.14 -2.39 -0.02 1.29 16 26 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 27 H 0.04 1.52 8.08 -2.39 -0.02 1.50 16 28 H 0.05 1.92 7.83 -2.39 -0.02 1.90 16 29 H 0.25 13.64 8.31 -92.71 -0.77 12.87 16 30 H 0.07 3.61 5.52 -2.39 -0.01 3.60 16 31 H 0.05 1.87 7.86 -2.39 -0.02 1.85 16 32 H 0.05 2.15 6.64 -2.39 -0.02 2.14 16 33 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.41 10.71 6.53 -92.71 -0.60 10.10 16 35 H 0.16 3.12 7.73 -2.91 -0.02 3.10 16 36 H 0.18 1.67 8.06 -2.91 -0.02 1.65 16 37 H 0.43 1.59 9.06 -74.06 -0.67 0.92 16 38 H 0.18 3.31 6.41 -2.91 -0.02 3.29 16 Total: -1.00 -69.98 326.01 -0.56 -70.54 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -0.17 Total: 14.94 kcal Atomic # 6 Polarization: 14.90 SS G_CDS: 6.06 Total: 20.96 kcal Atomic # 7 Polarization: -113.74 SS G_CDS: -7.22 Total: -120.97 kcal Atomic # 8 Polarization: -30.31 SS G_CDS: -1.26 Total: -31.57 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.10 kcal Total: -69.98 -0.56 -70.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266434552.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.728 kcal (2) G-P(sol) polarization free energy of solvation -69.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds