Wall clock time and date at job start Tue Mar 31 2020 01:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35685 * 117.00023 * 2 1 4 4 C 1.38889 * 119.62379 * 179.97438 * 3 2 1 5 5 C 1.39571 * 118.94981 * 180.02562 * 4 3 2 6 6 C 1.48161 * 120.89603 * 180.02562 * 5 4 3 7 7 O 1.21516 * 119.99929 * 19.68665 * 6 5 4 8 8 N 1.34773 * 120.00105 * 199.68540 * 6 5 4 9 9 C 1.46499 * 120.00079 * 7.05045 * 8 6 5 10 10 C 1.46507 * 120.00094 * 187.05021 * 8 6 5 11 11 C 1.52997 * 109.46938 * 270.00137 * 10 8 6 12 12 N 1.46510 * 109.46862 * 179.97438 * 11 10 8 13 13 C 1.36935 * 119.99456 * 179.97438 * 12 11 10 14 14 H 1.07991 * 120.00840 * 0.02562 * 13 12 11 15 15 C 1.38820 * 119.99297 * 180.02562 * 13 12 11 16 16 N 1.31616 * 119.99544 * 179.97438 * 15 13 12 17 17 Si 1.86795 * 120.00265 * 0.02562 * 15 13 12 18 18 H 1.48494 * 109.47513 * 89.99724 * 17 15 13 19 19 H 1.48500 * 109.47193 * 210.00170 * 17 15 13 20 20 H 1.48503 * 109.47093 * 329.99784 * 17 15 13 21 21 C 1.39973 * 118.21441 * 0.27976 * 5 4 3 22 22 C 1.37980 * 119.13400 * 359.47470 * 21 5 4 23 23 N 1.31911 * 120.97005 * 0.53923 * 22 21 5 24 24 H 1.08995 * 109.47178 * 299.99481 * 1 2 3 25 25 H 1.08996 * 109.46810 * 59.99738 * 1 2 3 26 26 H 1.08996 * 109.46986 * 179.97438 * 1 2 3 27 27 H 1.08003 * 120.52764 * 359.97438 * 4 3 2 28 28 H 1.08995 * 109.47059 * 264.71293 * 9 8 6 29 29 H 1.08994 * 109.47049 * 24.71520 * 9 8 6 30 30 H 1.09003 * 109.46774 * 144.71803 * 9 8 6 31 31 H 1.09003 * 109.46751 * 30.00445 * 10 8 6 32 32 H 1.09001 * 109.47334 * 150.00010 * 10 8 6 33 33 H 1.09000 * 109.47380 * 299.99303 * 11 10 8 34 34 H 1.09006 * 109.47060 * 60.00230 * 11 10 8 35 35 H 0.96999 * 119.99676 * 0.02562 * 12 11 10 36 36 H 0.97002 * 119.99915 * 179.97438 * 16 15 13 37 37 H 1.07999 * 120.43404 * 179.72685 * 21 5 4 38 38 H 1.07993 * 119.51274 * 180.27680 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4325 1.2725 0.0005 5 6 4.0514 2.5235 0.0011 6 6 5.5283 2.6415 0.0011 7 8 6.2129 1.7024 -0.3539 8 7 6.1125 3.7905 0.3948 9 6 5.3001 4.8666 0.9676 10 6 7.5601 3.9634 0.2498 11 6 8.2619 3.4714 1.5172 12 7 9.7096 3.6438 1.3719 13 6 10.5487 3.2710 2.3878 14 1 10.1435 2.8496 3.2958 15 6 11.9203 3.4348 2.2504 16 7 12.7268 3.0770 3.2270 17 14 12.6212 4.1644 0.6801 18 1 12.7090 5.6405 0.8162 19 1 13.9765 3.6081 0.4377 20 1 11.7351 3.8245 -0.4621 21 6 3.2394 3.6636 0.0071 22 6 1.8680 3.5116 0.0011 23 7 1.3179 2.3127 0.0006 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 4.0231 0.3683 0.0014 28 1 5.0359 5.5781 0.1854 29 1 4.3914 4.4459 1.3982 30 1 5.8686 5.3763 1.7456 31 1 7.9108 3.3876 -0.6067 32 1 7.7864 5.0184 0.0954 33 1 7.9113 4.0474 2.3736 34 1 8.0357 2.4163 1.6715 35 1 10.0734 4.0226 0.5565 36 1 13.6853 3.1911 3.1308 37 1 3.6806 4.6494 0.0121 38 1 1.2358 4.3871 0.0012 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266756935.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:00 Heat of formation + Delta-G solvation = 13.883000 kcal Electronic energy + Delta-G solvation = -21059.864263 eV Core-core repulsion = 17711.996111 eV Total energy + Delta-G solvation = -3347.868152 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.24850 -39.80222 -38.00015 -36.23904 -34.72110 -33.00028 -31.62864 -31.04285 -28.70888 -27.83052 -26.90659 -24.88821 -23.54846 -23.02301 -21.45044 -20.19780 -18.47643 -17.71991 -17.53152 -16.62836 -16.38477 -16.22148 -15.78930 -15.47408 -14.73081 -14.41289 -14.27048 -13.95059 -13.76771 -13.59011 -13.52391 -13.21726 -12.84357 -12.65258 -12.26773 -11.74931 -11.57610 -11.44520 -11.17611 -11.12683 -10.76590 -10.41183 -10.20266 -10.16597 -9.76798 -9.59667 -8.89761 -8.86009 -8.71330 -7.24778 -5.75917 -3.12440 0.44355 0.79526 2.52618 2.72010 2.96665 3.38406 3.41087 3.46380 3.50243 3.91858 4.13392 4.55770 4.59949 4.66361 4.73535 4.93905 4.96764 4.98858 5.10140 5.24618 5.29930 5.36135 5.42067 5.46393 5.56106 5.57258 5.70311 5.73394 5.87647 5.93439 6.33502 6.59124 6.77208 6.86688 7.23164 7.43900 7.97061 8.01859 8.42194 9.20502 9.92494 10.11535 11.42406 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.036476 B = 0.003148 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.450121 B = 8891.097201 C = 9223.610475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.305 6.305 3 C 0.317 3.683 4 C -0.132 4.132 5 C -0.047 4.047 6 C 0.553 3.447 7 O -0.514 6.514 8 N -0.601 5.601 9 C 0.059 3.941 10 C 0.105 3.895 11 C 0.145 3.855 12 N -0.753 5.753 13 C -0.244 4.244 14 H 0.090 0.910 15 C 0.004 3.996 16 N -0.934 5.934 17 Si 0.886 3.114 18 H -0.284 1.284 19 H -0.290 1.290 20 H -0.276 1.276 21 C -0.204 4.204 22 C 0.134 3.866 23 N -0.530 5.530 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.097 0.903 27 H 0.154 0.846 28 H 0.064 0.936 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.028 0.972 34 H 0.033 0.967 35 H 0.361 0.639 36 H 0.260 0.740 37 H 0.166 0.834 38 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.174 3.118 -8.019 28.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.212 6.212 3 C 0.138 3.862 4 C -0.154 4.154 5 C -0.057 4.057 6 C 0.340 3.660 7 O -0.390 6.390 8 N -0.334 5.334 9 C -0.083 4.083 10 C -0.017 4.017 11 C 0.017 3.983 12 N -0.400 5.400 13 C -0.373 4.373 14 H 0.108 0.892 15 C -0.192 4.192 16 N -0.582 5.582 17 Si 0.716 3.284 18 H -0.210 1.210 19 H -0.216 1.216 20 H -0.202 1.202 21 C -0.224 4.224 22 C -0.022 4.022 23 N -0.254 5.254 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.115 0.885 27 H 0.172 0.828 28 H 0.083 0.917 29 H 0.106 0.894 30 H 0.097 0.903 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.046 0.954 34 H 0.051 0.949 35 H 0.193 0.807 36 H 0.070 0.930 37 H 0.183 0.817 38 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -27.498 2.168 -7.985 28.716 hybrid contribution 1.219 0.753 -0.970 1.730 sum -26.279 2.921 -8.955 27.916 Atomic orbital electron populations 1.22880 0.77012 1.03120 1.02454 1.86276 1.23039 1.24151 1.87708 1.19656 0.88958 0.84845 0.92720 1.21158 0.91967 0.99173 1.03086 1.20135 0.93940 0.93336 0.98319 1.18157 0.86640 0.82735 0.78444 1.90846 1.64224 1.36912 1.46969 1.47598 1.08645 1.15498 1.61663 1.22530 0.96820 0.90236 0.98761 1.21807 0.77366 1.01909 1.00602 1.20900 0.84506 0.98783 0.94107 1.42554 1.01057 1.77624 1.18724 1.19031 0.87807 1.34772 0.95735 0.89228 1.24680 0.95774 1.01215 0.97494 1.69703 1.03026 1.53398 1.32045 0.86518 0.78611 0.79094 0.84168 1.21047 1.21645 1.20235 1.23120 0.94955 1.00663 1.03635 1.22410 0.92595 0.93581 0.93577 1.67164 1.41350 0.99007 1.17893 0.92198 0.92255 0.88486 0.82824 0.91743 0.89376 0.90303 0.89621 0.90065 0.95443 0.94875 0.80654 0.93017 0.81701 0.81712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.38 101.05 1.05 1.34 16 2 O -0.31 -3.33 10.47 -18.76 -0.20 -3.52 16 3 C 0.32 3.65 7.49 -17.17 -0.13 3.52 16 4 C -0.13 -1.63 9.61 -38.84 -0.37 -2.01 16 5 C -0.05 -0.55 5.60 -104.68 -0.59 -1.14 16 6 C 0.55 8.16 7.55 -12.19 -0.09 8.07 16 7 O -0.51 -9.75 16.26 5.35 0.09 -9.66 16 8 N -0.60 -7.82 2.87 -182.57 -0.52 -8.34 16 9 C 0.06 0.48 8.67 59.85 0.52 1.00 16 10 C 0.11 1.64 5.49 -4.04 -0.02 1.62 16 11 C 0.15 2.92 6.58 -4.04 -0.03 2.90 16 12 N -0.75 -18.42 5.41 -59.90 -0.32 -18.75 16 13 C -0.24 -7.10 10.47 -15.06 -0.16 -7.26 16 14 H 0.09 2.80 8.06 -52.49 -0.42 2.38 16 15 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 16 N -0.93 -29.82 13.97 55.49 0.78 -29.05 16 17 Si 0.89 22.32 27.74 -169.99 -4.71 17.60 16 18 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 20 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 21 C -0.20 -1.69 7.71 -39.03 -0.30 -1.99 16 22 C 0.13 1.05 11.17 -17.61 -0.20 0.85 16 23 N -0.53 -5.42 9.18 -13.38 -0.12 -5.54 16 24 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 25 H 0.06 0.41 8.10 -51.93 -0.42 -0.01 16 26 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.15 1.98 7.86 -52.48 -0.41 1.56 16 28 H 0.06 0.36 7.16 -51.93 -0.37 -0.01 16 29 H 0.09 0.62 5.07 -51.93 -0.26 0.36 16 30 H 0.08 0.65 8.11 -51.93 -0.42 0.23 16 31 H 0.09 1.46 7.53 -51.93 -0.39 1.07 16 32 H 0.08 1.08 8.07 -51.93 -0.42 0.66 16 33 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.36 8.45 5.53 -40.82 -0.23 8.22 16 36 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 37 H 0.17 0.94 4.15 -52.49 -0.22 0.72 16 38 H 0.17 0.70 8.06 -52.49 -0.42 0.28 16 LS Contribution 321.40 15.07 4.84 4.84 Total: -1.00 -36.34 321.40 -5.44 -41.78 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -4.85 Total: 3.70 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: -0.41 Total: 6.94 kcal Atomic # 7 Polarization: -61.48 SS G_CDS: -0.20 Total: -61.67 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: -0.11 Total: -13.19 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.71 Total: 17.60 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -36.34 -5.44 -41.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266756935.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.659 kcal (2) G-P(sol) polarization free energy of solvation -36.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds