Wall clock time and date at job start Tue Mar 31 2020 01:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35685 * 117.00023 * 2 1 4 4 C 1.38889 * 119.62379 * 179.97438 * 3 2 1 5 5 C 1.39571 * 118.94981 * 180.02562 * 4 3 2 6 6 C 1.48161 * 120.89603 * 180.02562 * 5 4 3 7 7 O 1.21516 * 119.99929 * 19.68665 * 6 5 4 8 8 N 1.34773 * 120.00105 * 199.68540 * 6 5 4 9 9 C 1.46499 * 120.00079 * 7.05045 * 8 6 5 10 10 C 1.46507 * 120.00094 * 187.05021 * 8 6 5 11 11 C 1.52997 * 109.46938 * 270.00137 * 10 8 6 12 12 N 1.46510 * 109.46862 * 179.97438 * 11 10 8 13 13 C 1.36935 * 119.99456 * 179.97438 * 12 11 10 14 14 H 1.07991 * 120.00840 * 0.02562 * 13 12 11 15 15 C 1.38820 * 119.99297 * 180.02562 * 13 12 11 16 16 N 1.31616 * 119.99544 * 179.97438 * 15 13 12 17 17 Si 1.86795 * 120.00265 * 0.02562 * 15 13 12 18 18 H 1.48494 * 109.47513 * 89.99724 * 17 15 13 19 19 H 1.48500 * 109.47193 * 210.00170 * 17 15 13 20 20 H 1.48503 * 109.47093 * 329.99784 * 17 15 13 21 21 C 1.39973 * 118.21441 * 0.27976 * 5 4 3 22 22 C 1.37980 * 119.13400 * 359.47470 * 21 5 4 23 23 N 1.31911 * 120.97005 * 0.53923 * 22 21 5 24 24 H 1.08995 * 109.47178 * 299.99481 * 1 2 3 25 25 H 1.08996 * 109.46810 * 59.99738 * 1 2 3 26 26 H 1.08996 * 109.46986 * 179.97438 * 1 2 3 27 27 H 1.08003 * 120.52764 * 359.97438 * 4 3 2 28 28 H 1.08995 * 109.47059 * 264.71293 * 9 8 6 29 29 H 1.08994 * 109.47049 * 24.71520 * 9 8 6 30 30 H 1.09003 * 109.46774 * 144.71803 * 9 8 6 31 31 H 1.09003 * 109.46751 * 30.00445 * 10 8 6 32 32 H 1.09001 * 109.47334 * 150.00010 * 10 8 6 33 33 H 1.09000 * 109.47380 * 299.99303 * 11 10 8 34 34 H 1.09006 * 109.47060 * 60.00230 * 11 10 8 35 35 H 0.96999 * 119.99676 * 0.02562 * 12 11 10 36 36 H 0.97002 * 119.99915 * 179.97438 * 16 15 13 37 37 H 1.07999 * 120.43404 * 179.72685 * 21 5 4 38 38 H 1.07993 * 119.51274 * 180.27680 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4325 1.2725 0.0005 5 6 4.0514 2.5235 0.0011 6 6 5.5283 2.6415 0.0011 7 8 6.2129 1.7024 -0.3539 8 7 6.1125 3.7905 0.3948 9 6 5.3001 4.8666 0.9676 10 6 7.5601 3.9634 0.2498 11 6 8.2619 3.4714 1.5172 12 7 9.7096 3.6438 1.3719 13 6 10.5487 3.2710 2.3878 14 1 10.1435 2.8496 3.2958 15 6 11.9203 3.4348 2.2504 16 7 12.7268 3.0770 3.2270 17 14 12.6212 4.1644 0.6801 18 1 12.7090 5.6405 0.8162 19 1 13.9765 3.6081 0.4377 20 1 11.7351 3.8245 -0.4621 21 6 3.2394 3.6636 0.0071 22 6 1.8680 3.5116 0.0011 23 7 1.3179 2.3127 0.0006 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 4.0231 0.3683 0.0014 28 1 5.0359 5.5781 0.1854 29 1 4.3914 4.4459 1.3982 30 1 5.8686 5.3763 1.7456 31 1 7.9108 3.3876 -0.6067 32 1 7.7864 5.0184 0.0954 33 1 7.9113 4.0474 2.3736 34 1 8.0357 2.4163 1.6715 35 1 10.0734 4.0226 0.5565 36 1 13.6853 3.1911 3.1308 37 1 3.6806 4.6494 0.0121 38 1 1.2358 4.3871 0.0012 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266756935.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:00 Heat of formation + Delta-G solvation = -15.315731 kcal Electronic energy + Delta-G solvation = -21061.130415 eV Core-core repulsion = 17711.996111 eV Total energy + Delta-G solvation = -3349.134304 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.09869 -40.79144 -38.79873 -37.61535 -36.36434 -34.14691 -33.38132 -32.00059 -30.16771 -28.54555 -27.73667 -26.26563 -24.55179 -24.22453 -23.16410 -21.21659 -19.80279 -19.29812 -18.45978 -17.50007 -17.26701 -17.07656 -16.88782 -16.65183 -16.33952 -15.64930 -15.40287 -15.20377 -14.99281 -14.81945 -14.59580 -14.40206 -14.08637 -13.65144 -13.46970 -12.98850 -12.85608 -12.84461 -12.42182 -12.33700 -12.13433 -12.08950 -11.85386 -11.48685 -11.06188 -11.02258 -10.63803 -9.83770 -9.56633 -9.38537 -8.06506 -5.42784 -0.42135 0.05990 1.37327 1.42632 1.49509 1.56408 1.74025 2.14530 2.46768 2.70127 3.16201 3.24247 3.34256 3.69110 3.84945 3.92591 3.97253 4.12958 4.14250 4.29470 4.41911 4.44245 4.50321 4.60614 4.64008 4.68293 4.75854 4.91312 4.93159 4.98948 5.03591 5.25678 5.40707 5.69424 6.14358 6.16122 6.20703 6.70455 6.90736 7.02351 7.74660 7.96778 9.14936 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.036476 B = 0.003148 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.450121 B = 8891.097201 C = 9223.610475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.325 6.325 3 C 0.307 3.693 4 C -0.159 4.159 5 C -0.059 4.059 6 C 0.547 3.453 7 O -0.573 6.573 8 N -0.596 5.596 9 C 0.046 3.954 10 C 0.118 3.882 11 C 0.147 3.853 12 N -0.754 5.754 13 C -0.244 4.244 14 H 0.050 0.950 15 C -0.064 4.064 16 N -0.983 5.983 17 Si 0.963 3.037 18 H -0.267 1.267 19 H -0.295 1.295 20 H -0.252 1.252 21 C -0.184 4.184 22 C 0.144 3.856 23 N -0.533 5.533 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.119 0.881 27 H 0.130 0.870 28 H 0.106 0.894 29 H 0.102 0.898 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.117 0.883 33 H 0.036 0.964 34 H -0.001 1.001 35 H 0.370 0.630 36 H 0.260 0.740 37 H 0.200 0.800 38 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.431 6.404 -9.728 31.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.232 6.232 3 C 0.129 3.871 4 C -0.181 4.181 5 C -0.069 4.069 6 C 0.336 3.664 7 O -0.452 6.452 8 N -0.327 5.327 9 C -0.094 4.094 10 C -0.006 4.006 11 C 0.019 3.981 12 N -0.400 5.400 13 C -0.375 4.375 14 H 0.068 0.932 15 C -0.255 4.255 16 N -0.633 5.633 17 Si 0.789 3.211 18 H -0.192 1.192 19 H -0.222 1.222 20 H -0.177 1.177 21 C -0.204 4.204 22 C -0.012 4.012 23 N -0.258 5.258 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.137 0.863 27 H 0.148 0.852 28 H 0.124 0.876 29 H 0.120 0.880 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.136 0.864 33 H 0.054 0.946 34 H 0.017 0.983 35 H 0.203 0.797 36 H 0.069 0.931 37 H 0.217 0.783 38 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -29.835 5.485 -9.692 31.846 hybrid contribution 1.800 -0.275 -0.320 1.849 sum -28.036 5.210 -10.013 30.223 Atomic orbital electron populations 1.23109 0.75237 1.04747 1.02685 1.86248 1.24899 1.24383 1.87712 1.19646 0.88624 0.85539 0.93271 1.21075 0.92657 0.98999 1.05385 1.19967 0.92350 0.94486 1.00134 1.18694 0.87847 0.82349 0.77512 1.90810 1.65704 1.38991 1.49720 1.47683 1.07879 1.16192 1.60978 1.22961 0.96699 0.89475 1.00239 1.21546 0.78673 1.03294 0.97041 1.20976 0.82767 0.97111 0.97208 1.42483 1.02374 1.77347 1.17836 1.18974 0.88785 1.34046 0.95647 0.93201 1.25622 0.96043 1.02159 1.01718 1.69900 1.03357 1.55214 1.34849 0.85297 0.77412 0.78721 0.79675 1.19225 1.22210 1.17667 1.23477 0.94842 1.00662 1.01390 1.23248 0.92977 0.94005 0.90959 1.67285 1.41308 0.99429 1.17781 0.91923 0.91920 0.86304 0.85152 0.87596 0.87960 0.89796 0.91331 0.86449 0.94556 0.98279 0.79654 0.93099 0.78301 0.77051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.38 113.37 1.18 1.68 16 2 O -0.33 -7.20 10.47 -90.03 -0.94 -8.14 16 3 C 0.31 7.02 7.49 84.80 0.63 7.65 16 4 C -0.16 -4.11 9.61 22.75 0.22 -3.89 16 5 C -0.06 -1.34 5.60 -19.90 -0.11 -1.45 16 6 C 0.55 16.17 7.55 86.88 0.66 16.82 16 7 O -0.57 -22.97 16.26 -3.77 -0.06 -23.03 16 8 N -0.60 -14.34 2.87 -849.84 -2.44 -16.79 16 9 C 0.05 0.56 8.67 127.77 1.11 1.67 16 10 C 0.12 3.48 5.49 86.38 0.47 3.95 16 11 C 0.15 5.92 6.58 86.38 0.57 6.49 16 12 N -0.75 -36.62 5.41 -343.43 -1.86 -38.48 16 13 C -0.24 -14.54 10.47 84.04 0.88 -13.66 16 14 H 0.05 3.29 8.06 -2.92 -0.02 3.27 16 15 C -0.06 -3.86 5.50 84.86 0.47 -3.39 16 16 N -0.98 -64.41 13.97 21.65 0.30 -64.11 16 17 Si 0.96 45.75 27.74 68.60 1.90 47.65 16 18 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 19 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 20 H -0.25 -10.86 6.52 99.48 0.65 -10.21 16 21 C -0.18 -2.36 7.71 22.63 0.17 -2.19 16 22 C 0.14 1.64 11.17 84.62 0.94 2.59 16 23 N -0.53 -9.68 9.18 -309.15 -2.84 -12.52 16 24 H 0.06 0.81 8.10 -2.39 -0.02 0.79 16 25 H 0.06 0.80 8.10 -2.39 -0.02 0.78 16 26 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.13 3.82 7.86 -2.91 -0.02 3.80 16 28 H 0.11 0.50 7.16 -2.39 -0.02 0.48 16 29 H 0.10 0.98 5.07 -2.39 -0.01 0.97 16 30 H 0.08 1.01 8.11 -2.39 -0.02 1.00 16 31 H 0.07 2.30 7.53 -2.39 -0.02 2.28 16 32 H 0.12 2.66 8.07 -2.39 -0.02 2.64 16 33 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.00 -0.04 8.14 -2.38 -0.02 -0.06 16 35 H 0.37 16.58 5.53 -92.71 -0.51 16.07 16 36 H 0.26 16.09 8.31 -92.71 -0.77 15.32 16 37 H 0.20 1.09 4.15 -2.91 -0.01 1.08 16 38 H 0.21 0.43 8.06 -2.91 -0.02 0.40 16 Total: -1.00 -84.69 321.40 1.77 -82.92 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 0.51 Total: 16.24 kcal Atomic # 6 Polarization: 9.07 SS G_CDS: 7.19 Total: 16.26 kcal Atomic # 7 Polarization: -125.07 SS G_CDS: -6.83 Total: -131.90 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -1.00 Total: -31.18 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 1.90 Total: 47.65 kcal Total: -84.69 1.77 -82.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266756935.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.606 kcal (2) G-P(sol) polarization free energy of solvation -84.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds