Wall clock time and date at job start Tue Mar 31 2020 01:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36930 * 119.99849 * 2 1 4 4 H 1.07998 * 120.00220 * 202.34294 * 3 2 1 5 5 C 1.38818 * 120.00278 * 22.34601 * 3 2 1 6 6 N 1.31618 * 119.99959 * 11.33898 * 5 3 2 7 7 Si 1.86801 * 120.00278 * 191.34480 * 5 3 2 8 8 H 1.48504 * 109.47063 * 89.99470 * 7 5 3 9 9 H 1.48503 * 109.47100 * 209.99615 * 7 5 3 10 10 H 1.48500 * 109.46949 * 329.99993 * 7 5 3 11 11 C 1.46496 * 120.00020 * 179.97438 * 2 1 3 12 12 C 1.52993 * 109.47284 * 270.00225 * 11 2 1 13 13 N 1.46506 * 109.47293 * 179.97438 * 12 11 2 14 14 C 1.34779 * 120.00294 * 179.97438 * 13 12 11 15 15 O 1.21609 * 119.99722 * 0.27868 * 14 13 12 16 16 C 1.47448 * 119.99834 * 179.97438 * 14 13 12 17 17 C 1.41595 * 120.26500 * 0.02562 * 16 14 13 18 18 C 1.35968 * 119.01675 * 179.97438 * 17 16 14 19 19 C 1.40761 * 119.49897 * 359.97438 * 18 17 16 20 20 O 1.21959 * 119.75088 * 180.02562 * 19 18 17 21 21 N 1.34539 * 120.50111 * 0.02562 * 19 18 17 22 22 C 1.46495 * 119.48054 * 179.97438 * 21 19 18 23 23 C 1.34607 * 121.04410 * 359.69522 * 21 19 18 24 24 H 1.09002 * 109.47233 * 274.20746 * 1 2 3 25 25 H 1.08996 * 109.47167 * 34.21315 * 1 2 3 26 26 H 1.08999 * 109.46751 * 154.20788 * 1 2 3 27 27 H 0.96994 * 120.00206 * 180.02562 * 6 5 3 28 28 H 1.09004 * 109.46887 * 150.00581 * 11 2 1 29 29 H 1.09005 * 109.47319 * 30.00458 * 11 2 1 30 30 H 1.09008 * 109.47310 * 60.00156 * 12 11 2 31 31 H 1.09001 * 109.47401 * 299.99914 * 12 11 2 32 32 H 0.96998 * 119.99582 * 0.02562 * 13 12 11 33 33 H 1.08003 * 120.49130 * 359.97438 * 17 16 14 34 34 H 1.08007 * 120.25028 * 180.02562 * 18 17 16 35 35 H 1.09000 * 109.46653 * 0.02562 * 22 21 19 36 36 H 1.08997 * 109.47285 * 119.99907 * 22 21 19 37 37 H 1.08998 * 109.47577 * 240.00181 * 22 21 19 38 38 H 1.07997 * 119.77242 * 180.30611 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1689 1.2210 -0.3555 5 6 1.5338 2.3429 0.4571 6 7 0.3841 2.2691 1.0935 7 14 2.3367 4.0048 0.1687 8 1 1.8679 4.5632 -1.1250 9 1 1.9680 4.9304 1.2700 10 1 3.8122 3.8419 0.1319 11 6 2.1976 -1.2687 0.0006 12 6 2.4525 -1.7098 1.4432 13 7 3.1845 -2.9788 1.4438 14 6 3.5218 -3.5618 2.6112 15 8 3.2141 -3.0369 3.6641 16 6 4.2580 -4.8393 2.6117 17 6 4.6139 -5.4583 1.3889 18 6 5.2931 -6.6358 1.4190 19 6 5.6272 -7.2119 2.6591 20 8 6.2367 -8.2677 2.6914 21 7 5.2791 -6.6066 3.8091 22 6 5.6376 -7.2262 5.0872 23 6 4.6114 -5.4378 3.8039 24 1 -0.3634 0.0754 1.0249 25 1 -0.3633 0.8498 -0.5778 26 1 -0.3633 -0.9253 -0.4472 27 1 -0.0464 3.0776 1.4125 28 1 3.1500 -1.1385 -0.5133 29 1 1.6085 -2.0286 -0.5130 30 1 1.5000 -1.8399 1.9571 31 1 3.0416 -0.9499 1.9568 32 1 3.4271 -3.3991 0.6039 33 1 4.3498 -5.0019 0.4464 34 1 5.5750 -7.1250 0.4982 35 1 6.1746 -8.1565 4.9019 36 1 6.2737 -6.5468 5.6546 37 1 4.7319 -7.4362 5.6561 38 1 4.3465 -4.9673 4.7392 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267205498.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:25 Heat of formation + Delta-G solvation = -8.033677 kcal Electronic energy + Delta-G solvation = -20957.773037 eV Core-core repulsion = 17608.954507 eV Total energy + Delta-G solvation = -3348.818530 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.76371 -39.40629 -37.10028 -36.05889 -35.08284 -34.10731 -31.37648 -30.37633 -28.61700 -27.68048 -25.89997 -24.71811 -23.44315 -22.99013 -20.72147 -20.55394 -18.32028 -17.70228 -16.96299 -16.72409 -16.47409 -15.96516 -15.47798 -15.02353 -14.72029 -14.55703 -13.95495 -13.73204 -13.68095 -13.39794 -13.20785 -12.91043 -12.48763 -12.40637 -12.24024 -11.84804 -11.23260 -10.90602 -10.88283 -10.61572 -10.51221 -10.35857 -10.31104 -10.01739 -9.97362 -9.79143 -8.75723 -8.58788 -8.27653 -6.85547 -5.76970 -3.24550 0.46648 1.10879 2.17571 2.92039 3.34327 3.39511 3.43888 3.45011 3.57062 4.25099 4.34911 4.47312 4.50460 4.70818 4.76883 4.78838 4.97963 5.21169 5.38005 5.58407 5.60847 5.64310 5.79306 5.84152 5.94004 6.05469 6.24148 6.59675 6.62757 6.68298 6.70594 6.93282 7.34484 7.59823 7.69010 7.72694 7.77889 8.33594 8.40656 9.18317 9.80230 10.28137 11.27973 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.035278 B = 0.003021 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.514106 B = 9267.729935 C = 9417.997639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.596 5.596 3 C -0.261 4.261 4 H 0.071 0.929 5 C 0.004 3.996 6 N -0.906 5.906 7 Si 0.908 3.092 8 H -0.287 1.287 9 H -0.290 1.290 10 H -0.279 1.279 11 C 0.143 3.857 12 C 0.095 3.905 13 N -0.718 5.718 14 C 0.568 3.432 15 O -0.547 6.547 16 C -0.245 4.245 17 C 0.006 3.994 18 C -0.246 4.246 19 C 0.514 3.486 20 O -0.548 6.548 21 N -0.492 5.492 22 C 0.047 3.953 23 C 0.204 3.796 24 H 0.030 0.970 25 H 0.047 0.953 26 H -0.002 1.002 27 H 0.254 0.746 28 H 0.049 0.951 29 H 0.042 0.958 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.394 0.606 33 H 0.141 0.859 34 H 0.154 0.846 35 H 0.106 0.894 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.797 -17.336 3.275 19.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.319 5.319 3 C -0.391 4.391 4 H 0.088 0.912 5 C -0.195 4.195 6 N -0.550 5.550 7 Si 0.737 3.263 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.015 3.985 12 C -0.031 4.031 13 N -0.369 5.369 14 C 0.354 3.646 15 O -0.426 6.426 16 C -0.254 4.254 17 C -0.016 4.016 18 C -0.268 4.268 19 C 0.317 3.683 20 O -0.431 6.431 21 N -0.200 5.200 22 C -0.094 4.094 23 C 0.071 3.929 24 H 0.048 0.952 25 H 0.066 0.934 26 H 0.017 0.983 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.228 0.772 33 H 0.158 0.842 34 H 0.172 0.828 35 H 0.124 0.876 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 7.843 -17.494 4.114 19.608 hybrid contribution 0.410 0.888 -0.367 1.045 sum 8.253 -16.605 3.747 18.918 Atomic orbital electron populations 1.20859 0.82119 0.95792 0.99510 1.43926 1.02081 1.00335 1.85512 1.19233 0.98190 0.85218 1.36429 0.91159 1.25074 0.97654 0.98706 0.98054 1.70065 1.17767 1.27264 1.39898 0.86211 0.78851 0.83856 0.77338 1.21429 1.21670 1.20426 1.21005 0.96412 0.88980 0.92138 1.22587 0.95758 0.82426 1.02282 1.46051 1.57992 1.25312 1.07512 1.17633 0.79057 0.83394 0.84501 1.90806 1.55603 1.65108 1.31124 1.19600 1.12521 1.00620 0.92666 1.21544 0.89752 0.92637 0.97641 1.21980 1.08002 0.99250 0.97536 1.17304 0.81087 0.85722 0.84216 1.90926 1.42619 1.22715 1.86810 1.45178 1.45362 1.19191 1.10312 1.22339 1.03035 1.01399 0.82599 1.22293 0.86229 0.83610 1.00730 0.95191 0.93400 0.98347 0.93603 0.93275 0.93926 0.91970 0.91096 0.77199 0.84169 0.82797 0.87557 0.89717 0.89708 0.80310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.89 9.01 59.85 0.54 4.43 16 2 N -0.60 -14.49 2.93 -181.12 -0.53 -15.02 16 3 C -0.26 -7.00 9.67 -15.06 -0.15 -7.14 16 4 H 0.07 1.83 7.84 -52.49 -0.41 1.42 16 5 C 0.00 0.11 5.13 -17.43 -0.09 0.02 16 6 N -0.91 -26.09 10.58 55.49 0.59 -25.50 16 7 Si 0.91 21.58 29.57 -169.99 -5.03 16.55 16 8 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 9 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 C 0.14 2.69 5.82 -4.05 -0.02 2.67 16 12 C 0.09 1.75 6.00 -4.04 -0.02 1.72 16 13 N -0.72 -9.98 5.51 -61.37 -0.34 -10.32 16 14 C 0.57 8.22 7.76 -12.51 -0.10 8.12 16 15 O -0.55 -10.09 16.32 5.27 0.09 -10.00 16 16 C -0.25 -2.66 5.88 -104.95 -0.62 -3.27 16 17 C 0.01 0.05 9.57 -39.12 -0.37 -0.32 16 18 C -0.25 -2.39 9.97 -39.44 -0.39 -2.79 16 19 C 0.51 5.97 7.40 -15.41 -0.11 5.85 16 20 O -0.55 -8.00 16.33 4.96 0.08 -7.92 16 21 N -0.49 -4.55 2.95 -126.74 -0.37 -4.92 16 22 C 0.05 0.29 10.55 59.84 0.63 0.92 16 23 C 0.20 1.91 9.92 -16.42 -0.16 1.75 16 24 H 0.03 0.78 7.42 -51.93 -0.39 0.40 16 25 H 0.05 1.24 7.19 -51.93 -0.37 0.86 16 26 H 0.00 -0.04 7.84 -51.93 -0.41 -0.45 16 27 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 28 H 0.05 0.87 8.03 -51.93 -0.42 0.46 16 29 H 0.04 0.70 7.86 -51.93 -0.41 0.29 16 30 H 0.06 1.27 8.14 -51.92 -0.42 0.85 16 31 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 32 H 0.39 4.08 6.54 -40.82 -0.27 3.81 16 33 H 0.14 0.89 6.48 -52.48 -0.34 0.54 16 34 H 0.15 1.27 8.06 -52.48 -0.42 0.85 16 35 H 0.11 0.77 6.83 -51.93 -0.35 0.42 16 36 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.18 1.42 7.59 -52.49 -0.40 1.03 16 LS Contribution 324.75 15.07 4.89 4.89 Total: -1.00 -34.64 324.75 -6.50 -41.14 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -5.01 Total: -0.85 kcal Atomic # 6 Polarization: 12.83 SS G_CDS: -0.87 Total: 11.96 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: -0.65 Total: -55.77 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: 0.17 Total: -17.92 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -34.64 -6.50 -41.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267205498.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.104 kcal (2) G-P(sol) polarization free energy of solvation -34.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds