Wall clock time and date at job start Tue Mar 31 2020 01:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36930 * 119.99849 * 2 1 4 4 H 1.07998 * 120.00220 * 202.34294 * 3 2 1 5 5 C 1.38818 * 120.00278 * 22.34601 * 3 2 1 6 6 N 1.31618 * 119.99959 * 11.33898 * 5 3 2 7 7 Si 1.86801 * 120.00278 * 191.34480 * 5 3 2 8 8 H 1.48504 * 109.47063 * 89.99470 * 7 5 3 9 9 H 1.48503 * 109.47100 * 209.99615 * 7 5 3 10 10 H 1.48500 * 109.46949 * 329.99993 * 7 5 3 11 11 C 1.46496 * 120.00020 * 179.97438 * 2 1 3 12 12 C 1.52993 * 109.47284 * 270.00225 * 11 2 1 13 13 N 1.46506 * 109.47293 * 179.97438 * 12 11 2 14 14 C 1.34779 * 120.00294 * 179.97438 * 13 12 11 15 15 O 1.21609 * 119.99722 * 0.27868 * 14 13 12 16 16 C 1.47448 * 119.99834 * 179.97438 * 14 13 12 17 17 C 1.41595 * 120.26500 * 0.02562 * 16 14 13 18 18 C 1.35968 * 119.01675 * 179.97438 * 17 16 14 19 19 C 1.40761 * 119.49897 * 359.97438 * 18 17 16 20 20 O 1.21959 * 119.75088 * 180.02562 * 19 18 17 21 21 N 1.34539 * 120.50111 * 0.02562 * 19 18 17 22 22 C 1.46495 * 119.48054 * 179.97438 * 21 19 18 23 23 C 1.34607 * 121.04410 * 359.69522 * 21 19 18 24 24 H 1.09002 * 109.47233 * 274.20746 * 1 2 3 25 25 H 1.08996 * 109.47167 * 34.21315 * 1 2 3 26 26 H 1.08999 * 109.46751 * 154.20788 * 1 2 3 27 27 H 0.96994 * 120.00206 * 180.02562 * 6 5 3 28 28 H 1.09004 * 109.46887 * 150.00581 * 11 2 1 29 29 H 1.09005 * 109.47319 * 30.00458 * 11 2 1 30 30 H 1.09008 * 109.47310 * 60.00156 * 12 11 2 31 31 H 1.09001 * 109.47401 * 299.99914 * 12 11 2 32 32 H 0.96998 * 119.99582 * 0.02562 * 13 12 11 33 33 H 1.08003 * 120.49130 * 359.97438 * 17 16 14 34 34 H 1.08007 * 120.25028 * 180.02562 * 18 17 16 35 35 H 1.09000 * 109.46653 * 0.02562 * 22 21 19 36 36 H 1.08997 * 109.47285 * 119.99907 * 22 21 19 37 37 H 1.08998 * 109.47577 * 240.00181 * 22 21 19 38 38 H 1.07997 * 119.77242 * 180.30611 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1689 1.2210 -0.3555 5 6 1.5338 2.3429 0.4571 6 7 0.3841 2.2691 1.0935 7 14 2.3367 4.0048 0.1687 8 1 1.8679 4.5632 -1.1250 9 1 1.9680 4.9304 1.2700 10 1 3.8122 3.8419 0.1319 11 6 2.1976 -1.2687 0.0006 12 6 2.4525 -1.7098 1.4432 13 7 3.1845 -2.9788 1.4438 14 6 3.5218 -3.5618 2.6112 15 8 3.2141 -3.0369 3.6641 16 6 4.2580 -4.8393 2.6117 17 6 4.6139 -5.4583 1.3889 18 6 5.2931 -6.6358 1.4190 19 6 5.6272 -7.2119 2.6591 20 8 6.2367 -8.2677 2.6914 21 7 5.2791 -6.6066 3.8091 22 6 5.6376 -7.2262 5.0872 23 6 4.6114 -5.4378 3.8039 24 1 -0.3634 0.0754 1.0249 25 1 -0.3633 0.8498 -0.5778 26 1 -0.3633 -0.9253 -0.4472 27 1 -0.0464 3.0776 1.4125 28 1 3.1500 -1.1385 -0.5133 29 1 1.6085 -2.0286 -0.5130 30 1 1.5000 -1.8399 1.9571 31 1 3.0416 -0.9499 1.9568 32 1 3.4271 -3.3991 0.6039 33 1 4.3498 -5.0019 0.4464 34 1 5.5750 -7.1250 0.4982 35 1 6.1746 -8.1565 4.9019 36 1 6.2737 -6.5468 5.6546 37 1 4.7319 -7.4362 5.6561 38 1 4.3465 -4.9673 4.7392 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267205498.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:25 Heat of formation + Delta-G solvation = -32.495323 kcal Electronic energy + Delta-G solvation = -20958.833773 eV Core-core repulsion = 17608.954507 eV Total energy + Delta-G solvation = -3349.879267 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.58420 -40.59728 -38.09928 -37.72505 -36.00431 -35.45724 -33.23348 -31.33493 -29.85903 -28.60778 -27.88929 -25.84538 -24.51823 -24.16156 -22.36010 -21.75486 -19.31513 -18.71872 -18.56313 -17.82232 -17.25176 -16.90340 -16.78841 -16.53286 -16.36469 -15.43114 -15.30010 -15.23800 -14.88314 -14.35937 -14.23545 -14.18378 -14.07712 -13.51129 -13.13310 -13.06052 -12.79225 -12.69689 -12.58153 -12.43831 -12.05668 -11.98177 -11.72656 -11.26157 -11.20606 -11.09004 -10.63963 -10.07950 -9.14217 -8.83626 -7.82485 -5.31829 -0.27930 0.22647 1.42818 1.49368 1.49575 1.58445 1.91411 2.22229 2.54551 2.65658 3.33037 3.51359 3.60572 3.73512 3.82159 3.90496 4.06299 4.30410 4.34070 4.37967 4.43042 4.71586 4.73412 4.88251 4.89604 4.93558 5.04299 5.12348 5.20655 5.30320 5.36272 5.50185 5.66310 5.76030 5.81097 6.33737 6.60731 6.76196 7.15427 7.27460 7.86720 8.28689 9.21042 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.035278 B = 0.003021 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.514106 B = 9267.729935 C = 9417.997639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.615 5.615 3 C -0.265 4.265 4 H 0.077 0.923 5 C -0.055 4.055 6 N -0.939 5.939 7 Si 0.969 3.031 8 H -0.284 1.284 9 H -0.299 1.299 10 H -0.267 1.267 11 C 0.144 3.856 12 C 0.117 3.883 13 N -0.705 5.705 14 C 0.570 3.430 15 O -0.592 6.592 16 C -0.257 4.257 17 C 0.021 3.979 18 C -0.255 4.255 19 C 0.502 3.498 20 O -0.587 6.587 21 N -0.487 5.487 22 C 0.040 3.960 23 C 0.220 3.780 24 H -0.001 1.001 25 H 0.020 0.980 26 H 0.037 0.963 27 H 0.247 0.753 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.037 0.963 31 H 0.033 0.967 32 H 0.415 0.585 33 H 0.170 0.830 34 H 0.168 0.832 35 H 0.093 0.907 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.904 -18.409 2.418 20.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.338 5.338 3 C -0.395 4.395 4 H 0.095 0.905 5 C -0.250 4.250 6 N -0.586 5.586 7 Si 0.797 3.203 8 H -0.211 1.211 9 H -0.226 1.226 10 H -0.192 1.192 11 C 0.017 3.983 12 C -0.010 4.010 13 N -0.357 5.357 14 C 0.359 3.641 15 O -0.474 6.474 16 C -0.265 4.265 17 C 0.000 4.000 18 C -0.276 4.276 19 C 0.307 3.693 20 O -0.472 6.472 21 N -0.193 5.193 22 C -0.100 4.100 23 C 0.086 3.914 24 H 0.018 0.982 25 H 0.039 0.961 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.253 0.747 33 H 0.187 0.813 34 H 0.185 0.815 35 H 0.112 0.888 36 H 0.125 0.875 37 H 0.126 0.874 38 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 8.989 -18.618 3.224 20.925 hybrid contribution 0.097 1.115 -0.049 1.121 sum 9.086 -17.503 3.175 19.975 Atomic orbital electron populations 1.20611 0.82492 0.96480 0.97527 1.44168 1.02343 1.01654 1.85611 1.19610 0.98391 0.86405 1.35075 0.90484 1.25840 0.98445 1.02056 0.98631 1.70240 1.19278 1.27478 1.41573 0.85236 0.78511 0.79774 0.76734 1.21096 1.22570 1.19173 1.21167 0.97231 0.87528 0.92330 1.21954 0.94351 0.83476 1.01247 1.45704 1.57420 1.23830 1.08736 1.18046 0.78379 0.84055 0.83655 1.90791 1.57400 1.66528 1.32683 1.19309 1.13561 0.99445 0.94212 1.21706 0.88423 0.91912 0.97974 1.22080 1.08504 0.99638 0.97379 1.17690 0.80841 0.85461 0.85347 1.90908 1.44529 1.24370 1.87426 1.45276 1.44251 1.18797 1.11003 1.22607 1.04529 1.01235 0.81580 1.22484 0.84808 0.83106 1.01037 0.98238 0.96090 0.94500 0.94340 0.91560 0.90570 0.94455 0.94812 0.74699 0.81260 0.81486 0.88806 0.87490 0.87424 0.78845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.34 9.01 127.77 1.15 9.50 16 2 N -0.61 -29.38 2.93 -726.93 -2.13 -31.51 16 3 C -0.26 -14.05 9.67 84.04 0.81 -13.24 16 4 H 0.08 3.91 7.84 -2.91 -0.02 3.88 16 5 C -0.05 -3.03 5.13 84.86 0.44 -2.59 16 6 N -0.94 -55.43 10.58 21.65 0.23 -55.20 16 7 Si 0.97 44.57 29.57 68.60 2.03 46.60 16 8 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 9 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 10 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 11 C 0.14 5.08 5.82 86.38 0.50 5.59 16 12 C 0.12 4.20 6.00 86.38 0.52 4.72 16 13 N -0.70 -18.06 5.51 -466.33 -2.57 -20.62 16 14 C 0.57 15.59 7.76 86.67 0.67 16.27 16 15 O -0.59 -21.58 16.32 -4.06 -0.07 -21.65 16 16 C -0.26 -4.95 5.88 -20.08 -0.12 -5.07 16 17 C 0.02 0.31 9.57 22.57 0.22 0.53 16 18 C -0.25 -4.37 9.97 22.36 0.22 -4.14 16 19 C 0.50 10.94 7.40 84.90 0.63 11.57 16 20 O -0.59 -16.81 16.33 -5.18 -0.08 -16.90 16 21 N -0.49 -8.06 2.95 -673.12 -1.99 -10.05 16 22 C 0.04 0.41 10.55 127.77 1.35 1.76 16 23 C 0.22 3.63 9.92 84.21 0.84 4.47 16 24 H 0.00 -0.04 7.42 -2.39 -0.02 -0.06 16 25 H 0.02 1.08 7.19 -2.39 -0.02 1.06 16 26 H 0.04 1.45 7.84 -2.39 -0.02 1.43 16 27 H 0.25 14.27 8.31 -92.71 -0.77 13.49 16 28 H 0.07 2.13 8.03 -2.39 -0.02 2.12 16 29 H 0.08 2.21 7.86 -2.38 -0.02 2.19 16 30 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 31 H 0.03 1.46 8.14 -2.39 -0.02 1.45 16 32 H 0.41 7.06 6.54 -92.71 -0.61 6.45 16 33 H 0.17 1.40 6.48 -2.91 -0.02 1.38 16 34 H 0.17 2.37 8.06 -2.91 -0.02 2.34 16 35 H 0.09 1.27 6.83 -2.39 -0.02 1.26 16 36 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.19 2.65 7.59 -2.91 -0.02 2.63 16 Total: -1.00 -77.08 324.75 3.12 -73.96 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: 0.47 Total: 6.03 kcal Atomic # 6 Polarization: 22.12 SS G_CDS: 7.22 Total: 29.35 kcal Atomic # 7 Polarization: -110.93 SS G_CDS: -6.45 Total: -117.38 kcal Atomic # 8 Polarization: -38.40 SS G_CDS: -0.15 Total: -38.55 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -77.08 3.12 -73.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267205498.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.464 kcal (2) G-P(sol) polarization free energy of solvation -77.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds