Wall clock time and date at job start Tue Mar 31 2020 01:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46499 * 120.00439 * 2 1 4 4 C 1.53000 * 109.46829 * 270.00168 * 3 2 1 5 5 N 1.46503 * 109.46826 * 179.97438 * 4 3 2 6 6 C 1.36932 * 119.99957 * 179.97438 * 5 4 3 7 7 H 1.08003 * 120.00022 * 0.02562 * 6 5 4 8 8 C 1.38814 * 119.99992 * 180.02562 * 6 5 4 9 9 N 1.31612 * 120.00080 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 120.00041 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.46923 * 59.99315 * 10 8 6 12 12 H 1.48497 * 109.47073 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.46768 * 299.99587 * 10 8 6 14 14 C 1.34777 * 119.99784 * 179.97438 * 2 1 3 15 15 O 1.21281 * 120.00115 * 180.02562 * 14 2 1 16 16 C 1.50702 * 120.00139 * 0.02562 * 14 2 1 17 17 O 1.42894 * 109.47522 * 179.97438 * 16 14 2 18 18 C 1.35910 * 117.00621 * 180.02562 * 17 16 14 19 19 C 1.39138 * 120.47706 * 180.24394 * 18 17 16 20 20 C 1.38535 * 118.37336 * 180.24194 * 19 18 17 21 21 C 1.38262 * 119.22035 * 359.47237 * 20 19 18 22 22 N 1.31844 * 120.88422 * 0.30388 * 21 20 19 23 23 C 1.31834 * 121.78446 * 359.97438 * 22 21 20 24 24 H 1.09007 * 109.47181 * 270.00187 * 1 2 3 25 25 H 1.09001 * 109.47410 * 29.99835 * 1 2 3 26 26 H 1.09001 * 109.47702 * 150.00513 * 1 2 3 27 27 H 1.09010 * 109.46502 * 29.99903 * 3 2 1 28 28 H 1.09000 * 109.47370 * 149.99409 * 3 2 1 29 29 H 1.08996 * 109.46999 * 299.99650 * 4 3 2 30 30 H 1.09001 * 109.47285 * 60.00079 * 4 3 2 31 31 H 0.97001 * 120.00143 * 0.02562 * 5 4 3 32 32 H 0.97005 * 120.00096 * 180.02562 * 9 8 6 33 33 H 1.09002 * 109.46741 * 59.99741 * 16 14 2 34 34 H 1.08998 * 109.47583 * 300.00372 * 16 14 2 35 35 H 1.07999 * 120.81005 * 0.02562 * 19 18 17 36 36 H 1.08002 * 120.39207 * 179.75678 * 20 19 18 37 37 H 1.08000 * 119.55595 * 180.28266 * 21 20 19 38 38 H 1.07997 * 119.66066 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7103 -1.4425 5 7 3.1846 2.9793 -1.4425 6 6 3.5273 3.5720 -2.6284 7 1 3.2575 3.1042 -3.5637 8 6 4.2214 4.7741 -2.6284 9 7 4.5497 5.3445 -1.4886 10 14 4.6883 5.5831 -4.2462 11 1 3.4588 5.8786 -5.0248 12 1 5.4178 6.8477 -3.9748 13 1 5.5590 4.6661 -5.0249 14 6 2.1388 -1.1672 0.0005 15 8 3.3516 -1.1673 0.0010 16 6 1.3853 -2.4723 0.0005 17 8 2.3137 -3.5585 0.0005 18 6 1.7943 -4.8144 0.0000 19 6 2.6327 -5.9249 0.0050 20 6 2.0566 -7.1847 -0.0009 21 6 0.6785 -7.2968 -0.0004 22 7 -0.0877 -6.2239 -0.0005 23 6 0.4207 -5.0075 -0.0004 24 1 -0.3634 0.0000 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5137 27 1 1.6084 2.0283 0.5139 28 1 3.1499 1.1383 0.5139 29 1 3.0415 0.9506 -1.9563 30 1 1.5001 1.8407 -1.9563 31 1 3.4272 3.3993 -0.6025 32 1 5.0344 6.1847 -1.4886 33 1 0.7589 -2.5302 -0.8897 34 1 0.7582 -2.5299 0.8902 35 1 3.7063 -5.8074 0.0099 36 1 2.6766 -8.0691 -0.0012 37 1 0.2237 -8.2763 -0.0004 38 1 -0.2391 -4.1525 -0.0009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267441083.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:23 Heat of formation + Delta-G solvation = -10.266291 kcal Electronic energy + Delta-G solvation = -20683.923982 eV Core-core repulsion = 17335.008638 eV Total energy + Delta-G solvation = -3348.915343 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.04976 -39.87682 -38.19394 -35.96700 -34.41860 -32.78841 -31.60313 -30.78804 -29.33895 -27.78491 -26.35808 -24.17257 -23.70557 -23.06896 -21.54362 -19.45944 -18.78814 -17.38116 -17.22951 -17.04285 -16.80835 -16.42083 -15.75296 -15.18375 -14.76690 -14.53146 -14.02666 -13.92881 -13.60324 -13.44139 -13.19796 -13.04053 -12.95557 -12.88062 -12.54422 -12.36451 -11.81046 -11.29841 -11.02547 -10.90600 -10.68958 -10.15195 -10.08959 -9.95988 -9.77874 -9.67284 -8.87599 -8.83424 -8.64908 -6.94510 -5.76404 -3.05973 0.73197 0.92638 2.25407 2.50421 3.26509 3.43334 3.45143 3.49248 3.50724 4.08032 4.16512 4.33055 4.52805 4.57361 4.61248 4.65659 4.71442 4.93829 5.01638 5.15093 5.21728 5.44022 5.51340 5.59219 5.61822 5.73871 5.76828 5.97454 6.06034 6.10743 6.44958 6.66937 6.80926 6.86091 7.30959 7.56724 7.69492 8.09610 8.41920 9.52855 10.08335 10.43429 11.46394 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.034985 B = 0.002726 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.149881 B =10269.910560 C =10567.110183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.608 5.608 3 C 0.109 3.891 4 C 0.142 3.858 5 N -0.730 5.730 6 C -0.240 4.240 7 H 0.070 0.930 8 C -0.013 4.013 9 N -0.934 5.934 10 Si 0.910 3.090 11 H -0.286 1.286 12 H -0.290 1.290 13 H -0.285 1.285 14 C 0.512 3.488 15 O -0.508 6.508 16 C 0.040 3.960 17 O -0.282 6.282 18 C 0.083 3.917 19 C -0.106 4.106 20 C -0.130 4.130 21 C 0.056 3.944 22 N -0.450 5.450 23 C 0.013 3.987 24 H 0.060 0.940 25 H 0.082 0.918 26 H 0.067 0.933 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.023 0.977 30 H 0.019 0.981 31 H 0.384 0.616 32 H 0.256 0.744 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.146 0.854 36 H 0.143 0.857 37 H 0.158 0.842 38 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.709 -23.047 6.007 26.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.343 5.343 3 C -0.013 4.013 4 C 0.013 3.987 5 N -0.375 5.375 6 C -0.371 4.371 7 H 0.088 0.912 8 C -0.209 4.209 9 N -0.582 5.582 10 Si 0.740 3.260 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.212 1.212 14 C 0.297 3.703 15 O -0.381 6.381 16 C -0.038 4.038 17 O -0.192 6.192 18 C 0.035 3.965 19 C -0.132 4.132 20 C -0.150 4.150 21 C -0.102 4.102 22 N -0.160 5.160 23 C -0.145 4.145 24 H 0.078 0.922 25 H 0.101 0.899 26 H 0.086 0.914 27 H 0.100 0.900 28 H 0.105 0.895 29 H 0.041 0.959 30 H 0.037 0.963 31 H 0.218 0.782 32 H 0.066 0.934 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.163 0.837 36 H 0.161 0.839 37 H 0.175 0.825 38 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -11.713 -23.010 5.841 26.472 hybrid contribution 0.927 0.815 -0.658 1.399 sum -10.786 -22.195 5.183 25.215 Atomic orbital electron populations 1.21909 0.79381 1.03777 1.02036 1.47697 1.07053 1.05905 1.73661 1.21774 0.97575 0.82536 0.99417 1.20912 0.95211 0.89523 0.93014 1.42193 1.67147 1.21529 1.06630 1.19155 1.29628 1.02396 0.85921 0.91239 1.24755 1.01174 0.98037 0.96972 1.69648 1.44940 1.19584 1.24022 0.86229 0.78140 0.78646 0.82941 1.21245 1.21616 1.21204 1.19861 0.88114 0.84433 0.77846 1.90799 1.13356 1.86675 1.47297 1.22633 0.92043 0.85335 1.03826 1.86199 1.34027 1.11024 1.87998 1.20158 0.93516 0.85537 0.97281 1.21022 1.01048 0.89975 1.01195 1.22051 0.96483 0.97407 0.99067 1.22680 0.90613 0.97483 0.99389 1.67515 1.40446 0.98423 1.09568 1.22932 0.91621 0.96210 1.03716 0.92159 0.89917 0.91395 0.90033 0.89475 0.95908 0.96347 0.78225 0.93397 0.88666 0.88763 0.83662 0.83928 0.82472 0.82478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.59 10.24 59.84 0.61 1.20 16 2 N -0.61 -8.03 2.87 -181.57 -0.52 -8.55 16 3 C 0.11 1.82 5.52 -4.04 -0.02 1.80 16 4 C 0.14 2.97 6.58 -4.04 -0.03 2.95 16 5 N -0.73 -19.07 5.60 -59.91 -0.34 -19.40 16 6 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 7 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 8 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 9 N -0.93 -28.62 13.06 55.49 0.72 -27.90 16 10 Si 0.91 22.77 29.55 -169.99 -5.02 17.75 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 13 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 14 C 0.51 7.48 7.75 -10.98 -0.09 7.39 16 15 O -0.51 -10.06 16.08 -14.35 -0.23 -10.30 16 16 C 0.04 0.40 3.78 36.01 0.14 0.54 16 17 O -0.28 -3.56 9.68 -39.37 -0.38 -3.94 16 18 C 0.08 0.88 6.71 -39.07 -0.26 0.62 16 19 C -0.11 -0.98 10.13 -39.14 -0.40 -1.37 16 20 C -0.13 -0.93 10.11 -39.46 -0.40 -1.33 16 21 C 0.06 0.45 11.18 -17.54 -0.20 0.25 16 22 N -0.45 -4.54 10.35 -13.13 -0.14 -4.67 16 23 C 0.01 0.12 10.22 -17.38 -0.18 -0.05 16 24 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.08 0.69 8.07 -51.93 -0.42 0.28 16 26 H 0.07 0.38 6.44 -51.93 -0.33 0.05 16 27 H 0.08 1.22 8.07 -51.92 -0.42 0.80 16 28 H 0.09 1.64 7.42 -51.93 -0.39 1.25 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.38 10.38 7.67 -40.82 -0.31 10.07 16 32 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 33 H 0.10 0.72 6.94 -51.93 -0.36 0.36 16 34 H 0.09 0.66 7.65 -51.93 -0.40 0.26 16 35 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.14 0.59 8.06 -52.49 -0.42 0.16 16 37 H 0.16 0.80 8.06 -52.49 -0.42 0.37 16 38 H 0.16 1.09 6.32 -52.49 -0.33 0.76 16 LS Contribution 329.55 15.07 4.97 4.97 Total: -1.00 -36.74 329.55 -7.04 -43.79 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -5.04 Total: 3.81 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: -1.06 Total: 4.45 kcal Atomic # 7 Polarization: -60.26 SS G_CDS: -0.27 Total: -60.52 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: -0.61 Total: -14.23 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -36.74 -7.04 -43.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267441083.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.520 kcal (2) G-P(sol) polarization free energy of solvation -36.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds