Wall clock time and date at job start Tue Mar 31 2020 01:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46499 * 120.00439 * 2 1 4 4 C 1.53000 * 109.46829 * 270.00168 * 3 2 1 5 5 N 1.46503 * 109.46826 * 179.97438 * 4 3 2 6 6 C 1.36932 * 119.99957 * 179.97438 * 5 4 3 7 7 H 1.08003 * 120.00022 * 0.02562 * 6 5 4 8 8 C 1.38814 * 119.99992 * 180.02562 * 6 5 4 9 9 N 1.31612 * 120.00080 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 120.00041 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.46923 * 59.99315 * 10 8 6 12 12 H 1.48497 * 109.47073 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.46768 * 299.99587 * 10 8 6 14 14 C 1.34777 * 119.99784 * 179.97438 * 2 1 3 15 15 O 1.21281 * 120.00115 * 180.02562 * 14 2 1 16 16 C 1.50702 * 120.00139 * 0.02562 * 14 2 1 17 17 O 1.42894 * 109.47522 * 179.97438 * 16 14 2 18 18 C 1.35910 * 117.00621 * 180.02562 * 17 16 14 19 19 C 1.39138 * 120.47706 * 180.24394 * 18 17 16 20 20 C 1.38535 * 118.37336 * 180.24194 * 19 18 17 21 21 C 1.38262 * 119.22035 * 359.47237 * 20 19 18 22 22 N 1.31844 * 120.88422 * 0.30388 * 21 20 19 23 23 C 1.31834 * 121.78446 * 359.97438 * 22 21 20 24 24 H 1.09007 * 109.47181 * 270.00187 * 1 2 3 25 25 H 1.09001 * 109.47410 * 29.99835 * 1 2 3 26 26 H 1.09001 * 109.47702 * 150.00513 * 1 2 3 27 27 H 1.09010 * 109.46502 * 29.99903 * 3 2 1 28 28 H 1.09000 * 109.47370 * 149.99409 * 3 2 1 29 29 H 1.08996 * 109.46999 * 299.99650 * 4 3 2 30 30 H 1.09001 * 109.47285 * 60.00079 * 4 3 2 31 31 H 0.97001 * 120.00143 * 0.02562 * 5 4 3 32 32 H 0.97005 * 120.00096 * 180.02562 * 9 8 6 33 33 H 1.09002 * 109.46741 * 59.99741 * 16 14 2 34 34 H 1.08998 * 109.47583 * 300.00372 * 16 14 2 35 35 H 1.07999 * 120.81005 * 0.02562 * 19 18 17 36 36 H 1.08002 * 120.39207 * 179.75678 * 20 19 18 37 37 H 1.08000 * 119.55595 * 180.28266 * 21 20 19 38 38 H 1.07997 * 119.66066 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7103 -1.4425 5 7 3.1846 2.9793 -1.4425 6 6 3.5273 3.5720 -2.6284 7 1 3.2575 3.1042 -3.5637 8 6 4.2214 4.7741 -2.6284 9 7 4.5497 5.3445 -1.4886 10 14 4.6883 5.5831 -4.2462 11 1 3.4588 5.8786 -5.0248 12 1 5.4178 6.8477 -3.9748 13 1 5.5590 4.6661 -5.0249 14 6 2.1388 -1.1672 0.0005 15 8 3.3516 -1.1673 0.0010 16 6 1.3853 -2.4723 0.0005 17 8 2.3137 -3.5585 0.0005 18 6 1.7943 -4.8144 0.0000 19 6 2.6327 -5.9249 0.0050 20 6 2.0566 -7.1847 -0.0009 21 6 0.6785 -7.2968 -0.0004 22 7 -0.0877 -6.2239 -0.0005 23 6 0.4207 -5.0075 -0.0004 24 1 -0.3634 0.0000 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5137 27 1 1.6084 2.0283 0.5139 28 1 3.1499 1.1383 0.5139 29 1 3.0415 0.9506 -1.9563 30 1 1.5001 1.8407 -1.9563 31 1 3.4272 3.3993 -0.6025 32 1 5.0344 6.1847 -1.4886 33 1 0.7589 -2.5302 -0.8897 34 1 0.7582 -2.5299 0.8902 35 1 3.7063 -5.8074 0.0099 36 1 2.6766 -8.0691 -0.0012 37 1 0.2237 -8.2763 -0.0004 38 1 -0.2391 -4.1525 -0.0009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267441083.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:23 Heat of formation + Delta-G solvation = -36.822169 kcal Electronic energy + Delta-G solvation = -20685.075531 eV Core-core repulsion = 17335.008638 eV Total energy + Delta-G solvation = -3350.066893 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.80438 -40.88919 -39.00737 -37.39161 -36.14510 -33.59659 -33.32936 -31.57086 -30.61746 -28.89176 -27.45844 -25.65054 -24.62549 -23.98267 -23.14541 -20.57973 -19.55805 -19.19087 -18.28282 -17.79775 -17.67575 -17.29564 -16.95824 -16.53453 -16.08809 -15.40414 -15.36435 -15.21723 -15.08844 -14.55146 -14.49013 -14.13383 -13.93571 -13.70075 -13.24324 -13.11522 -13.08419 -12.86463 -12.80540 -12.46376 -12.35754 -12.18327 -11.89696 -11.03545 -10.98556 -10.71129 -10.45289 -9.79825 -9.51282 -9.09168 -7.99720 -5.30790 0.12588 0.26048 1.34780 1.42974 1.45356 1.49162 1.55449 2.37496 2.55574 2.80829 3.28474 3.33588 3.52766 3.68181 3.89479 3.97880 3.99537 4.04868 4.08956 4.11707 4.20346 4.34259 4.44456 4.54040 4.62145 4.72618 4.94234 4.96595 4.98596 5.05821 5.14356 5.37268 5.45567 5.54526 6.07967 6.21657 6.29521 6.94365 7.01137 7.27813 7.99335 8.24529 9.23384 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.034985 B = 0.002726 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.149881 B =10269.910560 C =10567.110183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.603 5.603 3 C 0.122 3.878 4 C 0.148 3.852 5 N -0.743 5.743 6 C -0.253 4.253 7 H 0.073 0.927 8 C -0.073 4.073 9 N -0.968 5.968 10 Si 0.979 3.021 11 H -0.272 1.272 12 H -0.291 1.291 13 H -0.281 1.281 14 C 0.503 3.497 15 O -0.575 6.575 16 C 0.046 3.954 17 O -0.315 6.315 18 C 0.062 3.938 19 C -0.124 4.124 20 C -0.122 4.122 21 C 0.053 3.947 22 N -0.474 5.474 23 C 0.010 3.990 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.101 0.899 27 H 0.103 0.897 28 H 0.058 0.942 29 H -0.003 1.003 30 H 0.035 0.965 31 H 0.376 0.624 32 H 0.254 0.746 33 H 0.127 0.873 34 H 0.132 0.868 35 H 0.145 0.855 36 H 0.175 0.825 37 H 0.186 0.814 38 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.957 -24.582 5.548 28.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.337 5.337 3 C -0.001 4.001 4 C 0.020 3.980 5 N -0.387 5.387 6 C -0.385 4.385 7 H 0.091 0.909 8 C -0.266 4.266 9 N -0.617 5.617 10 Si 0.806 3.194 11 H -0.198 1.198 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.291 3.709 15 O -0.454 6.454 16 C -0.031 4.031 17 O -0.227 6.227 18 C 0.015 3.985 19 C -0.150 4.150 20 C -0.141 4.141 21 C -0.105 4.105 22 N -0.183 5.183 23 C -0.147 4.147 24 H 0.105 0.895 25 H 0.101 0.899 26 H 0.119 0.881 27 H 0.121 0.879 28 H 0.077 0.923 29 H 0.015 0.985 30 H 0.052 0.948 31 H 0.208 0.792 32 H 0.063 0.937 33 H 0.144 0.856 34 H 0.150 0.850 35 H 0.163 0.837 36 H 0.192 0.808 37 H 0.203 0.797 38 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -14.043 -24.581 5.375 28.815 hybrid contribution 1.584 1.173 -0.500 2.034 sum -12.458 -23.408 4.876 26.961 Atomic orbital electron populations 1.22316 0.75730 1.05491 1.04377 1.47772 1.09099 1.04246 1.72581 1.21386 0.97502 0.84918 0.96322 1.20969 0.94462 0.86752 0.95831 1.42387 1.67702 1.22995 1.05617 1.19552 1.29326 1.02662 0.86949 0.90901 1.25642 1.01561 0.98838 1.00531 1.69806 1.45888 1.19881 1.26171 0.85148 0.78089 0.77293 0.78827 1.19806 1.21716 1.20721 1.20780 0.87663 0.86173 0.76244 1.90765 1.16421 1.87734 1.50450 1.22736 0.91141 0.82256 1.06961 1.86145 1.35652 1.12163 1.88744 1.20354 0.94382 0.84930 0.98842 1.21319 1.01336 0.90803 1.01583 1.22382 0.96688 0.97598 0.97463 1.23238 0.91006 0.98213 0.98040 1.67576 1.41196 0.99043 1.10532 1.23238 0.91358 0.96926 1.03183 0.89484 0.89898 0.88081 0.87911 0.92321 0.98508 0.94751 0.79204 0.93728 0.85583 0.85043 0.83715 0.80805 0.79727 0.80223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.80 10.24 127.77 1.31 2.11 16 2 N -0.60 -15.24 2.87 -846.74 -2.43 -17.67 16 3 C 0.12 4.12 5.52 86.38 0.48 4.59 16 4 C 0.15 6.27 6.58 86.38 0.57 6.84 16 5 N -0.74 -39.67 5.60 -343.45 -1.92 -41.59 16 6 C -0.25 -14.74 9.99 84.03 0.84 -13.90 16 7 H 0.07 4.09 7.83 -2.91 -0.02 4.07 16 8 C -0.07 -4.31 5.50 84.86 0.47 -3.85 16 9 N -0.97 -60.27 13.06 21.65 0.28 -59.99 16 10 Si 0.98 46.98 29.55 68.60 2.03 49.01 16 11 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 12 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 13 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 14 C 0.50 14.58 7.75 87.66 0.68 15.26 16 15 O -0.58 -23.95 16.08 16.00 0.26 -23.70 16 16 C 0.05 0.85 3.78 71.24 0.27 1.11 16 17 O -0.32 -7.85 9.68 -73.50 -0.71 -8.56 16 18 C 0.06 1.26 6.71 22.60 0.15 1.41 16 19 C -0.12 -2.20 10.13 22.56 0.23 -1.97 16 20 C -0.12 -1.49 10.11 22.35 0.23 -1.27 16 21 C 0.05 0.70 11.18 84.70 0.95 1.65 16 22 N -0.47 -8.50 10.35 -195.44 -2.02 -10.52 16 23 C 0.01 0.17 10.22 84.81 0.87 1.04 16 24 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 25 H 0.08 1.13 8.07 -2.39 -0.02 1.11 16 26 H 0.10 0.67 6.44 -2.39 -0.02 0.65 16 27 H 0.10 3.01 8.07 -2.38 -0.02 2.99 16 28 H 0.06 2.32 7.42 -2.39 -0.02 2.30 16 29 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 30 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.38 20.95 7.67 -92.71 -0.71 20.24 16 32 H 0.25 15.25 8.31 -92.70 -0.77 14.48 16 33 H 0.13 1.48 6.94 -2.39 -0.02 1.46 16 34 H 0.13 1.38 7.65 -2.39 -0.02 1.36 16 35 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 36 H 0.17 0.91 8.06 -2.91 -0.02 0.89 16 37 H 0.19 1.28 8.06 -2.91 -0.02 1.25 16 38 H 0.18 1.90 6.32 -2.91 -0.02 1.89 16 Total: -1.00 -83.23 329.55 2.87 -80.36 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: 0.36 Total: 19.63 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: 7.03 Total: 13.04 kcal Atomic # 7 Polarization: -123.68 SS G_CDS: -6.10 Total: -129.77 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: -0.45 Total: -32.26 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.01 kcal Total: -83.23 2.87 -80.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267441083.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.542 kcal (2) G-P(sol) polarization free energy of solvation -83.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds