Wall clock time and date at job start Tue Mar 31 2020 01:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36935 * 120.00251 * 2 1 4 4 H 1.08002 * 119.99954 * 203.13700 * 3 2 1 5 5 C 1.38809 * 119.99790 * 23.13126 * 3 2 1 6 6 N 1.31618 * 120.00291 * 17.25054 * 5 3 2 7 7 Si 1.86801 * 119.99967 * 197.25067 * 5 3 2 8 8 H 1.48496 * 109.47449 * 60.00039 * 7 5 3 9 9 H 1.48506 * 109.47218 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47080 * 299.99975 * 7 5 3 11 11 C 1.46505 * 119.99772 * 179.97438 * 2 1 3 12 12 C 1.53002 * 109.47076 * 90.00310 * 11 2 1 13 13 N 1.46492 * 109.46999 * 179.97438 * 12 11 2 14 14 C 1.46496 * 120.00337 * 269.99965 * 13 12 11 15 15 C 1.34785 * 119.99903 * 90.00053 * 13 12 11 16 16 O 1.21555 * 120.00011 * 1.43498 * 15 13 12 17 17 C 1.47829 * 119.99778 * 181.43340 * 15 13 12 18 18 N 1.32854 * 119.78610 * 354.67199 * 17 15 13 19 19 C 1.31380 * 121.69752 * 179.97438 * 18 17 15 20 20 C 1.38767 * 121.06511 * 359.97438 * 19 18 17 21 21 C 1.38299 * 119.44408 * 0.02562 * 20 19 18 22 22 C 1.39339 * 118.44515 * 0.02562 * 21 20 19 23 23 O 1.35650 * 120.54311 * 179.97438 * 22 21 20 24 24 H 1.08991 * 109.47273 * 274.68041 * 1 2 3 25 25 H 1.09009 * 109.46739 * 34.67791 * 1 2 3 26 26 H 1.08998 * 109.47358 * 154.67278 * 1 2 3 27 27 H 0.97007 * 120.00090 * 179.97438 * 6 5 3 28 28 H 1.08999 * 109.47074 * 330.00153 * 11 2 1 29 29 H 1.08995 * 109.46645 * 210.00454 * 11 2 1 30 30 H 1.08999 * 109.46778 * 59.99897 * 12 11 2 31 31 H 1.09001 * 109.46826 * 299.99716 * 12 11 2 32 32 H 1.08997 * 109.47090 * 263.55834 * 14 13 12 33 33 H 1.09000 * 109.47045 * 23.55445 * 14 13 12 34 34 H 1.08999 * 109.47727 * 143.55894 * 14 13 12 35 35 H 1.07999 * 119.46493 * 179.97438 * 19 18 17 36 36 H 1.07997 * 120.27826 * 180.02562 * 20 19 18 37 37 H 1.08005 * 120.78104 * 179.72841 * 21 20 19 38 38 H 0.96701 * 113.99873 * 90.00339 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1646 1.2234 -0.3675 5 6 1.5394 2.3397 0.4723 6 7 0.4602 2.2542 1.2208 7 14 2.2498 4.0138 0.0454 8 1 2.2543 4.1882 -1.4293 9 1 1.4201 5.0768 0.6675 10 1 3.6400 4.1073 0.5592 11 6 2.1975 -1.2688 0.0006 12 6 2.4526 -1.7111 -1.4418 13 7 3.1855 -2.9795 -1.4412 14 6 4.6505 -2.9790 -1.4413 15 6 2.5120 -4.1470 -1.4405 16 8 1.2967 -4.1476 -1.4668 17 6 3.2513 -5.4267 -1.4079 18 7 4.5776 -5.4249 -1.4864 19 6 5.2721 -6.5398 -1.4605 20 6 4.6442 -7.7722 -1.3488 21 6 3.2649 -7.8272 -1.2640 22 6 2.5498 -6.6317 -1.2946 23 8 1.1957 -6.6361 -1.2149 24 1 -0.3633 0.0838 1.0241 25 1 -0.3633 0.8452 -0.5848 26 1 -0.3634 -0.9289 -0.4396 27 1 0.0339 3.0605 1.5511 28 1 1.6084 -2.0282 0.5147 29 1 3.1498 -1.1382 0.5144 30 1 3.0417 -0.9516 -1.9558 31 1 1.5001 -1.8416 -1.9555 32 1 5.0137 -3.0947 -2.4624 33 1 5.0135 -2.0366 -1.0311 34 1 5.0142 -3.8052 -0.8305 35 1 6.3492 -6.4963 -1.5271 36 1 5.2277 -8.6807 -1.3283 37 1 2.7536 -8.7750 -1.1808 38 1 0.8547 -6.5839 -0.3115 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268234691.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:35 Heat of formation + Delta-G solvation = 10.905220 kcal Electronic energy + Delta-G solvation = -21722.130093 eV Core-core repulsion = 18374.132816 eV Total energy + Delta-G solvation = -3347.997278 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.02967 -38.89974 -37.50619 -35.94142 -34.76981 -32.77098 -31.38027 -30.55988 -28.46883 -26.43784 -25.76207 -24.81366 -23.71288 -22.91791 -20.69604 -19.64789 -18.61937 -17.42110 -17.05164 -16.59650 -16.10551 -15.59874 -15.30729 -15.01206 -14.56912 -13.98247 -13.64307 -13.60147 -13.54987 -12.99508 -12.87743 -12.66543 -12.37425 -12.22161 -11.97701 -11.29844 -11.24863 -10.83066 -10.77531 -10.48399 -10.18934 -10.14290 -10.02509 -9.84058 -9.76086 -9.24499 -9.13446 -8.58243 -8.23323 -6.66521 -5.67850 -3.14035 0.38622 0.80000 2.78410 3.17305 3.41947 3.47641 3.48985 3.58654 3.84014 4.06275 4.47203 4.48282 4.56974 4.65938 5.04560 5.17805 5.45257 5.54318 5.60820 5.64065 5.79222 5.83820 5.85317 6.03769 6.23729 6.36639 6.38172 6.63572 6.76370 6.92228 7.05379 7.33737 7.42264 7.48962 7.70465 7.78159 7.84534 8.39241 8.46133 9.27718 9.92203 10.42746 11.36764 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.034496 B = 0.003769 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.492583 B = 7427.870679 C = 8037.450234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.598 5.598 3 C -0.260 4.260 4 H 0.067 0.933 5 C 0.004 3.996 6 N -0.903 5.903 7 Si 0.903 3.097 8 H -0.284 1.284 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.144 3.856 12 C 0.091 3.909 13 N -0.589 5.589 14 C 0.077 3.923 15 C 0.556 3.444 16 O -0.519 6.519 17 C 0.057 3.943 18 N -0.433 5.433 19 C 0.079 3.921 20 C -0.138 4.138 21 C -0.114 4.114 22 C 0.120 3.880 23 O -0.470 6.470 24 H 0.030 0.970 25 H 0.038 0.962 26 H 0.004 0.996 27 H 0.253 0.747 28 H 0.037 0.963 29 H 0.046 0.954 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.102 0.898 35 H 0.165 0.835 36 H 0.142 0.858 37 H 0.146 0.854 38 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.887 -21.143 -4.147 23.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.321 5.321 3 C -0.390 4.390 4 H 0.085 0.915 5 C -0.195 4.195 6 N -0.547 5.547 7 Si 0.733 3.267 8 H -0.211 1.211 9 H -0.217 1.217 10 H -0.209 1.209 11 C 0.016 3.984 12 C -0.033 4.033 13 N -0.321 5.321 14 C -0.066 4.066 15 C 0.342 3.658 16 O -0.395 6.395 17 C -0.081 4.081 18 N -0.146 5.146 19 C -0.080 4.080 20 C -0.158 4.158 21 C -0.140 4.140 22 C 0.071 3.929 23 O -0.280 6.280 24 H 0.049 0.951 25 H 0.056 0.944 26 H 0.023 0.977 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.120 0.880 35 H 0.182 0.818 36 H 0.159 0.841 37 H 0.163 0.837 38 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 9.490 -20.170 -4.740 22.789 hybrid contribution 0.039 0.161 0.320 0.360 sum 9.529 -20.009 -4.420 22.599 Atomic orbital electron populations 1.20793 0.82529 0.95803 0.99379 1.43835 1.01892 1.00438 1.85928 1.19123 0.98500 0.85533 1.35811 0.91506 1.24994 0.98329 0.98451 0.97748 1.70093 1.22309 1.27368 1.34947 0.86370 0.78243 0.83966 0.78170 1.21071 1.21671 1.20933 1.20969 0.96201 0.88628 0.92633 1.22590 0.96823 0.82006 1.01916 1.47862 1.07796 1.05953 1.70528 1.22329 0.78753 1.03275 1.02284 1.17737 0.86721 0.82751 0.78607 1.90835 1.12421 1.86450 1.49781 1.21963 0.90094 0.94359 1.01733 1.68235 1.06269 1.29961 1.10178 1.23005 1.00918 0.87595 0.96519 1.22286 0.94570 0.99993 0.98923 1.22004 0.94475 0.98485 0.99013 1.19408 0.84803 0.91506 0.97191 1.84775 1.14524 1.95546 1.33116 0.95141 0.94351 0.97730 0.93707 0.94485 0.93572 0.90581 0.90493 0.93123 0.91949 0.88024 0.81771 0.84055 0.83665 0.74324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.20 9.01 59.85 0.54 4.74 16 2 N -0.60 -15.83 2.92 -181.11 -0.53 -16.36 16 3 C -0.26 -7.32 9.62 -15.06 -0.14 -7.47 16 4 H 0.07 1.81 7.89 -52.49 -0.41 1.40 16 5 C 0.00 0.10 5.00 -17.43 -0.09 0.02 16 6 N -0.90 -27.09 10.97 55.49 0.61 -26.48 16 7 Si 0.90 22.13 29.59 -169.99 -5.03 17.10 16 8 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 9 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 C 0.14 3.21 5.97 -4.04 -0.02 3.19 16 12 C 0.09 1.78 5.71 -4.04 -0.02 1.76 16 13 N -0.59 -9.97 2.87 -182.71 -0.52 -10.50 16 14 C 0.08 1.03 9.30 59.84 0.56 1.59 16 15 C 0.56 9.68 7.65 -12.33 -0.09 9.59 16 16 O -0.52 -10.58 14.73 -16.57 -0.24 -10.83 16 17 C 0.06 0.79 6.65 -82.88 -0.55 0.23 16 18 N -0.43 -4.99 6.01 -9.71 -0.06 -5.05 16 19 C 0.08 0.63 11.17 -17.55 -0.20 0.43 16 20 C -0.14 -0.91 10.10 -39.36 -0.40 -1.31 16 21 C -0.11 -0.94 10.12 -39.15 -0.40 -1.33 16 22 C 0.12 1.43 6.74 -38.55 -0.26 1.17 16 23 O -0.47 -5.90 11.60 -40.53 -0.47 -6.37 16 24 H 0.03 0.86 7.36 -51.93 -0.38 0.47 16 25 H 0.04 1.05 7.43 -51.92 -0.39 0.67 16 26 H 0.00 0.10 8.04 -51.93 -0.42 -0.32 16 27 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.04 0.84 8.07 -51.93 -0.42 0.42 16 29 H 0.05 1.01 8.04 -51.93 -0.42 0.59 16 30 H 0.08 1.47 8.07 -51.93 -0.42 1.05 16 31 H 0.08 1.65 7.40 -51.93 -0.38 1.27 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.82 8.02 -51.93 -0.42 0.40 16 34 H 0.10 1.27 5.26 -52.22 -0.27 0.99 16 35 H 0.17 0.76 8.06 -52.49 -0.42 0.34 16 36 H 0.14 0.46 8.06 -52.49 -0.42 0.04 16 37 H 0.15 0.84 8.06 -52.48 -0.42 0.42 16 38 H 0.40 3.48 9.06 45.56 0.41 3.89 16 LS Contribution 322.33 15.07 4.86 4.86 Total: -1.00 -35.04 322.33 -6.81 -41.85 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -4.34 Total: -0.82 kcal Atomic # 6 Polarization: 13.68 SS G_CDS: -1.08 Total: 12.60 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: -0.50 Total: -58.39 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: -0.71 Total: -17.20 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.03 Total: 17.10 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -35.04 -6.81 -41.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268234691.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.757 kcal (2) G-P(sol) polarization free energy of solvation -35.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds