Wall clock time and date at job start Tue Mar 31 2020 01:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36935 * 120.00251 * 2 1 4 4 H 1.08002 * 119.99954 * 203.13700 * 3 2 1 5 5 C 1.38809 * 119.99790 * 23.13126 * 3 2 1 6 6 N 1.31618 * 120.00291 * 17.25054 * 5 3 2 7 7 Si 1.86801 * 119.99967 * 197.25067 * 5 3 2 8 8 H 1.48496 * 109.47449 * 60.00039 * 7 5 3 9 9 H 1.48506 * 109.47218 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47080 * 299.99975 * 7 5 3 11 11 C 1.46505 * 119.99772 * 179.97438 * 2 1 3 12 12 C 1.53002 * 109.47076 * 90.00310 * 11 2 1 13 13 N 1.46492 * 109.46999 * 179.97438 * 12 11 2 14 14 C 1.46496 * 120.00337 * 269.99965 * 13 12 11 15 15 C 1.34785 * 119.99903 * 90.00053 * 13 12 11 16 16 O 1.21555 * 120.00011 * 1.43498 * 15 13 12 17 17 C 1.47829 * 119.99778 * 181.43340 * 15 13 12 18 18 N 1.32854 * 119.78610 * 354.67199 * 17 15 13 19 19 C 1.31380 * 121.69752 * 179.97438 * 18 17 15 20 20 C 1.38767 * 121.06511 * 359.97438 * 19 18 17 21 21 C 1.38299 * 119.44408 * 0.02562 * 20 19 18 22 22 C 1.39339 * 118.44515 * 0.02562 * 21 20 19 23 23 O 1.35650 * 120.54311 * 179.97438 * 22 21 20 24 24 H 1.08991 * 109.47273 * 274.68041 * 1 2 3 25 25 H 1.09009 * 109.46739 * 34.67791 * 1 2 3 26 26 H 1.08998 * 109.47358 * 154.67278 * 1 2 3 27 27 H 0.97007 * 120.00090 * 179.97438 * 6 5 3 28 28 H 1.08999 * 109.47074 * 330.00153 * 11 2 1 29 29 H 1.08995 * 109.46645 * 210.00454 * 11 2 1 30 30 H 1.08999 * 109.46778 * 59.99897 * 12 11 2 31 31 H 1.09001 * 109.46826 * 299.99716 * 12 11 2 32 32 H 1.08997 * 109.47090 * 263.55834 * 14 13 12 33 33 H 1.09000 * 109.47045 * 23.55445 * 14 13 12 34 34 H 1.08999 * 109.47727 * 143.55894 * 14 13 12 35 35 H 1.07999 * 119.46493 * 179.97438 * 19 18 17 36 36 H 1.07997 * 120.27826 * 180.02562 * 20 19 18 37 37 H 1.08005 * 120.78104 * 179.72841 * 21 20 19 38 38 H 0.96701 * 113.99873 * 90.00339 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1646 1.2234 -0.3675 5 6 1.5394 2.3397 0.4723 6 7 0.4602 2.2542 1.2208 7 14 2.2498 4.0138 0.0454 8 1 2.2543 4.1882 -1.4293 9 1 1.4201 5.0768 0.6675 10 1 3.6400 4.1073 0.5592 11 6 2.1975 -1.2688 0.0006 12 6 2.4526 -1.7111 -1.4418 13 7 3.1855 -2.9795 -1.4412 14 6 4.6505 -2.9790 -1.4413 15 6 2.5120 -4.1470 -1.4405 16 8 1.2967 -4.1476 -1.4668 17 6 3.2513 -5.4267 -1.4079 18 7 4.5776 -5.4249 -1.4864 19 6 5.2721 -6.5398 -1.4605 20 6 4.6442 -7.7722 -1.3488 21 6 3.2649 -7.8272 -1.2640 22 6 2.5498 -6.6317 -1.2946 23 8 1.1957 -6.6361 -1.2149 24 1 -0.3633 0.0838 1.0241 25 1 -0.3633 0.8452 -0.5848 26 1 -0.3634 -0.9289 -0.4396 27 1 0.0339 3.0605 1.5511 28 1 1.6084 -2.0282 0.5147 29 1 3.1498 -1.1382 0.5144 30 1 3.0417 -0.9516 -1.9558 31 1 1.5001 -1.8416 -1.9555 32 1 5.0137 -3.0947 -2.4624 33 1 5.0135 -2.0366 -1.0311 34 1 5.0142 -3.8052 -0.8305 35 1 6.3492 -6.4963 -1.5271 36 1 5.2277 -8.6807 -1.3283 37 1 2.7536 -8.7750 -1.1808 38 1 0.8547 -6.5839 -0.3115 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268234691.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:34 Heat of formation + Delta-G solvation = -13.397330 kcal Electronic energy + Delta-G solvation = -21723.183931 eV Core-core repulsion = 18374.132816 eV Total energy + Delta-G solvation = -3349.051115 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.93785 -40.10075 -38.38822 -37.75291 -36.32756 -33.80912 -33.13446 -31.46935 -30.11999 -27.99280 -27.54441 -26.16627 -24.67373 -24.09606 -22.51717 -20.92916 -19.44851 -18.81377 -18.41902 -17.95143 -17.21932 -16.95300 -16.50705 -16.30165 -15.98033 -15.53079 -15.20113 -14.86906 -14.57385 -14.27430 -14.20798 -13.98122 -13.81818 -13.70160 -13.09776 -13.04045 -12.81633 -12.72215 -12.48034 -12.23204 -12.15154 -11.92736 -11.67772 -11.24830 -10.84202 -10.69129 -10.14885 -9.98682 -9.65608 -8.78186 -7.84740 -5.35354 -0.42536 0.13664 1.47018 1.51095 1.57539 1.73271 1.94242 2.52152 2.71410 3.01427 3.20340 3.28262 3.64988 3.76661 3.91978 4.03273 4.09137 4.40457 4.43772 4.50306 4.53554 4.62147 4.77248 4.84884 4.88769 5.02284 5.05860 5.06387 5.18660 5.27115 5.52497 5.56540 5.62614 5.66748 6.29141 6.37434 6.61255 6.74859 7.09382 7.13215 7.80188 8.28383 9.19066 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.034496 B = 0.003769 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.492583 B = 7427.870679 C = 8037.450234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.615 5.615 3 C -0.272 4.272 4 H 0.077 0.923 5 C -0.052 4.052 6 N -0.938 5.938 7 Si 0.974 3.026 8 H -0.278 1.278 9 H -0.295 1.295 10 H -0.270 1.270 11 C 0.152 3.848 12 C 0.110 3.890 13 N -0.594 5.594 14 C 0.079 3.921 15 C 0.549 3.451 16 O -0.564 6.564 17 C 0.020 3.980 18 N -0.449 5.449 19 C 0.080 3.920 20 C -0.111 4.111 21 C -0.111 4.111 22 C 0.104 3.896 23 O -0.491 6.491 24 H 0.006 0.994 25 H 0.019 0.981 26 H 0.021 0.979 27 H 0.250 0.750 28 H 0.026 0.974 29 H 0.050 0.950 30 H 0.080 0.920 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.116 0.884 35 H 0.204 0.796 36 H 0.189 0.811 37 H 0.173 0.827 38 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.995 -23.216 -4.775 27.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.338 5.338 3 C -0.401 4.401 4 H 0.095 0.905 5 C -0.248 4.248 6 N -0.584 5.584 7 Si 0.801 3.199 8 H -0.204 1.204 9 H -0.221 1.221 10 H -0.196 1.196 11 C 0.024 3.976 12 C -0.015 4.015 13 N -0.326 5.326 14 C -0.062 4.062 15 C 0.337 3.663 16 O -0.443 6.443 17 C -0.116 4.116 18 N -0.162 5.162 19 C -0.081 4.081 20 C -0.130 4.130 21 C -0.136 4.136 22 C 0.055 3.945 23 O -0.303 6.303 24 H 0.024 0.976 25 H 0.037 0.963 26 H 0.040 0.960 27 H 0.059 0.941 28 H 0.045 0.955 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.134 0.866 35 H 0.220 0.780 36 H 0.206 0.794 37 H 0.190 0.810 38 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 12.644 -22.272 -5.377 26.169 hybrid contribution -0.818 0.590 0.526 1.138 sum 11.825 -21.682 -4.850 25.169 Atomic orbital electron populations 1.20509 0.83023 0.95717 0.97608 1.44068 1.01983 1.01570 1.86227 1.19525 0.99025 0.86297 1.35283 0.90528 1.25870 0.98959 1.02193 0.97750 1.70263 1.23891 1.28016 1.36253 0.85251 0.77819 0.78909 0.77918 1.20388 1.22119 1.19558 1.20989 0.95544 0.86733 0.94308 1.22032 0.96376 0.83702 0.99372 1.47916 1.09092 1.04906 1.70649 1.22493 0.76450 1.03943 1.03332 1.18409 0.86588 0.84051 0.77245 1.90787 1.14426 1.87343 1.51732 1.21445 0.91238 0.92865 1.06008 1.68054 1.05139 1.32134 1.10909 1.23743 1.02480 0.87106 0.94765 1.22821 0.93953 1.01250 0.95018 1.22328 0.95315 0.97945 0.98049 1.19720 0.84549 0.92360 0.97850 1.84725 1.15593 1.95657 1.34356 0.97553 0.96269 0.96029 0.94133 0.95517 0.93157 0.90157 0.92831 0.92023 0.91824 0.86633 0.77973 0.79426 0.80975 0.73189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.65 9.01 127.77 1.15 10.80 16 2 N -0.61 -33.32 2.92 -726.92 -2.12 -35.44 16 3 C -0.27 -15.40 9.62 84.03 0.81 -14.59 16 4 H 0.08 4.10 7.89 -2.91 -0.02 4.08 16 5 C -0.05 -3.01 5.00 84.86 0.42 -2.59 16 6 N -0.94 -57.63 10.97 21.65 0.24 -57.39 16 7 Si 0.97 45.70 29.59 68.60 2.03 47.73 16 8 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 9 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 10 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 11 C 0.15 6.91 5.97 86.38 0.52 7.43 16 12 C 0.11 4.44 5.71 86.38 0.49 4.93 16 13 N -0.59 -20.37 2.87 -850.23 -2.44 -22.81 16 14 C 0.08 2.05 9.30 127.77 1.19 3.24 16 15 C 0.55 19.69 7.65 86.78 0.66 20.36 16 16 O -0.56 -24.26 14.73 17.04 0.25 -24.01 16 17 C 0.02 0.55 6.65 41.93 0.28 0.83 16 18 N -0.45 -9.37 6.01 -184.62 -1.11 -10.48 16 19 C 0.08 0.92 11.17 84.89 0.95 1.87 16 20 C -0.11 -0.89 10.10 22.41 0.23 -0.67 16 21 C -0.11 -1.46 10.12 22.55 0.23 -1.23 16 22 C 0.10 2.40 6.74 22.94 0.15 2.56 16 23 O -0.49 -12.66 11.60 -68.72 -0.80 -13.46 16 24 H 0.01 0.37 7.36 -2.39 -0.02 0.35 16 25 H 0.02 1.08 7.43 -2.38 -0.02 1.06 16 26 H 0.02 1.06 8.04 -2.39 -0.02 1.05 16 27 H 0.25 14.82 8.31 -92.70 -0.77 14.05 16 28 H 0.03 1.25 8.07 -2.39 -0.02 1.23 16 29 H 0.05 2.23 8.04 -2.39 -0.02 2.21 16 30 H 0.08 3.13 8.07 -2.39 -0.02 3.11 16 31 H 0.05 2.40 7.40 -2.39 -0.02 2.38 16 32 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.06 1.60 8.02 -2.39 -0.02 1.58 16 34 H 0.12 2.70 5.26 -2.97 -0.02 2.68 16 35 H 0.20 0.71 8.06 -2.91 -0.02 0.69 16 36 H 0.19 -0.14 8.06 -2.91 -0.02 -0.16 16 37 H 0.17 1.30 8.06 -2.91 -0.02 1.27 16 38 H 0.41 7.64 9.06 -74.06 -0.67 6.97 16 Total: -1.00 -78.99 322.33 3.53 -75.45 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: 0.40 Total: 7.46 kcal Atomic # 6 Polarization: 25.86 SS G_CDS: 7.08 Total: 32.94 kcal Atomic # 7 Polarization: -120.68 SS G_CDS: -5.44 Total: -126.12 kcal Atomic # 8 Polarization: -36.92 SS G_CDS: -0.55 Total: -37.46 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -78.99 3.53 -75.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268234691.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.057 kcal (2) G-P(sol) polarization free energy of solvation -78.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds