Wall clock time and date at job start Tue Mar 31 2020 00:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.46978 * 2 1 4 4 C 1.46503 * 120.00121 * 262.85740 * 3 2 1 5 5 C 1.52995 * 109.47190 * 269.99932 * 4 3 2 6 6 N 1.46497 * 109.47029 * 179.97438 * 5 4 3 7 7 C 1.36941 * 119.99824 * 180.02562 * 6 5 4 8 8 H 1.07999 * 120.00179 * 0.02562 * 7 6 5 9 9 C 1.38812 * 120.00066 * 180.02562 * 7 6 5 10 10 N 1.31619 * 119.99655 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00279 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47159 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47475 * 119.99666 * 11 9 7 14 14 H 1.48498 * 109.47204 * 240.00096 * 11 9 7 15 15 C 1.34783 * 120.00241 * 82.85685 * 3 2 1 16 16 O 1.21512 * 120.00246 * 183.14981 * 15 3 2 17 17 C 1.48152 * 119.99649 * 3.15417 * 15 3 2 18 18 C 1.39169 * 119.69195 * 173.19871 * 17 15 3 19 19 C 1.38733 * 119.18868 * 179.97438 * 18 17 15 20 20 C 1.38373 * 118.56004 * 359.73089 * 19 18 17 21 21 C 1.39241 * 119.30245 * 0.51007 * 20 19 18 22 22 O 1.35667 * 119.61508 * 179.75117 * 21 20 19 23 23 N 1.31923 * 120.76777 * 359.47532 * 21 20 19 24 24 H 1.08997 * 109.46960 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47355 * 300.00016 * 1 2 3 26 26 H 1.09006 * 109.47131 * 60.00185 * 1 2 3 27 27 H 1.09000 * 109.47355 * 239.99984 * 2 1 3 28 28 H 1.09002 * 109.46818 * 119.99434 * 2 1 3 29 29 H 1.09003 * 109.46734 * 30.00511 * 4 3 2 30 30 H 1.09000 * 109.47060 * 150.00233 * 4 3 2 31 31 H 1.08997 * 109.47094 * 300.00069 * 5 4 3 32 32 H 1.09000 * 109.46873 * 60.00187 * 5 4 3 33 33 H 0.96993 * 120.00399 * 0.02562 * 6 5 4 34 34 H 0.97002 * 119.99727 * 180.02562 * 10 9 7 35 35 H 1.08010 * 120.40118 * 359.97432 * 18 17 15 36 36 H 1.07997 * 120.72040 * 179.97438 * 19 18 17 37 37 H 1.07998 * 120.35025 * 180.27749 * 20 19 18 38 38 H 0.96700 * 114.00032 * 269.72903 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4112 2.0193 -1.2589 5 6 3.8974 1.7644 -1.5178 6 7 4.2901 2.4019 -2.7769 7 6 5.5830 2.3074 -3.2181 8 1 6.3131 1.7625 -2.6381 9 6 5.9553 2.9119 -4.4110 10 7 5.0654 3.5755 -5.1181 11 14 7.7187 2.7824 -5.0132 12 1 8.5158 1.9884 -4.0439 13 1 7.7413 2.1133 -6.3387 14 1 8.3013 4.1429 -5.1354 15 6 2.1061 2.0650 1.1582 16 8 2.4564 3.2285 1.1518 17 6 1.7755 1.3980 2.4390 18 6 2.0030 2.0618 3.6408 19 6 1.6891 1.4276 4.8341 20 6 1.1529 0.1529 4.7847 21 6 0.9555 -0.4559 3.5481 22 8 0.4349 -1.7074 3.4924 23 7 1.2637 0.1723 2.4297 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8901 29 1 1.8231 1.6024 -2.0765 30 1 2.2327 3.0926 -1.1934 31 1 4.4853 2.1813 -0.7001 32 1 4.0759 0.6911 -1.5832 33 1 3.6344 2.8910 -3.2981 34 1 5.3255 3.9977 -5.9519 35 1 2.4190 3.0586 3.6444 36 1 1.8559 1.9196 5.7809 37 1 0.8938 -0.3658 5.6958 38 1 1.0985 -2.4106 3.5097 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268441963.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:58 Heat of formation + Delta-G solvation = -0.933905 kcal Electronic energy + Delta-G solvation = -21537.919290 eV Core-core repulsion = 18189.408629 eV Total energy + Delta-G solvation = -3348.510661 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.14607 -39.36983 -37.27125 -36.21821 -34.60726 -32.99033 -31.59329 -30.69031 -30.14244 -27.71154 -25.05351 -23.79258 -23.38462 -23.04148 -21.57300 -19.92455 -18.68355 -17.59482 -17.04176 -16.78689 -16.32389 -15.88116 -15.67940 -15.05482 -14.49038 -14.25346 -13.96651 -13.59799 -13.52834 -13.19401 -12.98902 -12.87960 -12.54857 -12.34722 -12.10754 -11.77790 -11.24015 -11.10848 -10.94068 -10.86168 -10.64300 -10.28552 -10.16300 -10.04697 -9.72555 -9.32264 -9.23737 -8.84203 -8.40695 -6.89327 -5.72655 -3.01737 0.33274 0.76296 2.59461 2.94565 3.25486 3.46607 3.51825 3.54404 3.56426 4.13614 4.43299 4.59537 4.64970 4.68943 4.97017 5.13091 5.24198 5.46888 5.49550 5.58697 5.66688 5.69890 5.76064 5.83967 5.91889 6.01072 6.09016 6.17276 6.24868 6.43501 6.64903 6.78726 6.95659 7.07943 7.34664 7.56155 7.74218 8.22533 8.45894 9.56817 10.13249 10.48581 11.50391 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.029176 B = 0.003525 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.478121 B = 7940.851837 C = 8216.741503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.099 3.901 3 N -0.584 5.584 4 C 0.105 3.895 5 C 0.144 3.856 6 N -0.730 5.730 7 C -0.237 4.237 8 H 0.071 0.929 9 C -0.015 4.015 10 N -0.933 5.933 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 C 0.562 3.438 16 O -0.526 6.526 17 C 0.110 3.890 18 C -0.121 4.121 19 C -0.066 4.066 20 C -0.168 4.168 21 C 0.301 3.699 22 O -0.479 6.479 23 N -0.463 5.463 24 H 0.061 0.939 25 H 0.054 0.946 26 H 0.047 0.953 27 H 0.071 0.929 28 H 0.111 0.889 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.022 0.978 32 H 0.019 0.981 33 H 0.384 0.616 34 H 0.255 0.745 35 H 0.153 0.847 36 H 0.147 0.853 37 H 0.144 0.856 38 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.770 -10.474 21.523 26.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 N -0.315 5.315 4 C -0.017 4.017 5 C 0.015 3.985 6 N -0.375 5.375 7 C -0.368 4.368 8 H 0.088 0.912 9 C -0.210 4.210 10 N -0.582 5.582 11 Si 0.740 3.260 12 H -0.206 1.206 13 H -0.219 1.219 14 H -0.218 1.218 15 C 0.348 3.652 16 O -0.402 6.402 17 C -0.028 4.028 18 C -0.142 4.142 19 C -0.092 4.092 20 C -0.190 4.190 21 C 0.120 3.880 22 O -0.286 6.286 23 N -0.185 5.185 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.089 0.911 28 H 0.129 0.871 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.040 0.960 32 H 0.037 0.963 33 H 0.218 0.782 34 H 0.065 0.935 35 H 0.171 0.829 36 H 0.165 0.835 37 H 0.161 0.839 38 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -11.095 -10.061 20.680 25.534 hybrid contribution 1.198 0.065 0.207 1.217 sum -9.897 -9.996 20.887 25.182 Atomic orbital electron populations 1.21991 0.95923 1.01683 1.01200 1.22112 0.94647 0.81615 1.03972 1.47851 1.62304 1.14708 1.06602 1.21799 0.97048 0.99322 0.83576 1.20901 0.91554 0.95925 0.90096 1.42218 1.09827 1.63838 1.21629 1.19257 0.86761 1.27639 1.03142 0.91150 1.24749 0.97903 1.00650 0.97740 1.69676 1.32852 1.39645 1.16015 0.86089 0.84373 0.77215 0.78361 1.20574 1.21854 1.21826 1.17871 0.78590 0.85814 0.82945 1.90825 1.47487 1.15682 1.86211 1.21064 0.97223 0.89852 0.94613 1.22180 0.98689 1.01851 0.91508 1.21550 0.94942 0.93768 0.98891 1.22330 1.00729 0.97180 0.98713 1.19315 0.93119 0.87598 0.87921 1.84807 1.35529 1.12486 1.95810 1.67753 1.10975 1.09370 1.30450 0.91998 0.92706 0.93406 0.91074 0.87134 0.90196 0.89550 0.96000 0.96316 0.78229 0.93549 0.82892 0.83546 0.83866 0.74084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.57 37.16 0.36 -1.42 16 2 C 0.10 1.28 5.70 -4.04 -0.02 1.26 16 3 N -0.58 -9.27 2.49 -174.69 -0.44 -9.70 16 4 C 0.10 1.92 5.51 -4.04 -0.02 1.89 16 5 C 0.14 3.15 6.58 -4.05 -0.03 3.13 16 6 N -0.73 -19.52 5.60 -59.91 -0.34 -19.86 16 7 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 8 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 9 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 10 N -0.93 -28.93 13.06 55.49 0.72 -28.21 16 11 Si 0.91 22.96 29.55 -169.99 -5.02 17.94 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 14 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 15 C 0.56 9.25 7.60 -12.19 -0.09 9.15 16 16 O -0.53 -10.32 15.90 5.36 0.09 -10.23 16 17 C 0.11 1.43 6.52 -83.02 -0.54 0.89 16 18 C -0.12 -1.28 9.62 -39.05 -0.38 -1.65 16 19 C -0.07 -0.48 10.16 -39.35 -0.40 -0.88 16 20 C -0.17 -1.20 10.05 -39.16 -0.39 -1.59 16 21 C 0.30 2.74 7.74 -17.14 -0.13 2.60 16 22 O -0.48 -3.52 13.56 -18.70 -0.25 -3.77 16 23 N -0.46 -5.29 4.36 -9.88 -0.04 -5.34 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.71 6.75 -51.93 -0.35 0.36 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.90 8.02 -51.93 -0.42 0.48 16 28 H 0.11 1.36 5.24 -52.30 -0.27 1.09 16 29 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 30 H 0.09 1.72 7.38 -51.93 -0.38 1.33 16 31 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.38 10.63 7.67 -40.82 -0.31 10.32 16 34 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 35 H 0.15 1.59 7.65 -52.48 -0.40 1.18 16 36 H 0.15 0.61 8.06 -52.49 -0.42 0.19 16 37 H 0.14 0.64 8.06 -52.49 -0.42 0.21 16 38 H 0.40 1.02 9.06 45.56 0.41 1.43 16 LS Contribution 325.04 15.07 4.90 4.90 Total: -1.00 -35.51 325.04 -6.51 -42.02 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -4.23 Total: 6.46 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: -1.90 Total: 5.79 kcal Atomic # 7 Polarization: -63.01 SS G_CDS: -0.09 Total: -63.10 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: -0.17 Total: -14.00 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.94 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -35.51 -6.51 -42.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268441963.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.089 kcal (2) G-P(sol) polarization free energy of solvation -35.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds