Wall clock time and date at job start Tue Mar 31 2020 00:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.46978 * 2 1 4 4 C 1.46503 * 120.00121 * 262.85740 * 3 2 1 5 5 C 1.52995 * 109.47190 * 269.99932 * 4 3 2 6 6 N 1.46497 * 109.47029 * 179.97438 * 5 4 3 7 7 C 1.36941 * 119.99824 * 180.02562 * 6 5 4 8 8 H 1.07999 * 120.00179 * 0.02562 * 7 6 5 9 9 C 1.38812 * 120.00066 * 180.02562 * 7 6 5 10 10 N 1.31619 * 119.99655 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00279 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47159 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47475 * 119.99666 * 11 9 7 14 14 H 1.48498 * 109.47204 * 240.00096 * 11 9 7 15 15 C 1.34783 * 120.00241 * 82.85685 * 3 2 1 16 16 O 1.21512 * 120.00246 * 183.14981 * 15 3 2 17 17 C 1.48152 * 119.99649 * 3.15417 * 15 3 2 18 18 C 1.39169 * 119.69195 * 173.19871 * 17 15 3 19 19 C 1.38733 * 119.18868 * 179.97438 * 18 17 15 20 20 C 1.38373 * 118.56004 * 359.73089 * 19 18 17 21 21 C 1.39241 * 119.30245 * 0.51007 * 20 19 18 22 22 O 1.35667 * 119.61508 * 179.75117 * 21 20 19 23 23 N 1.31923 * 120.76777 * 359.47532 * 21 20 19 24 24 H 1.08997 * 109.46960 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47355 * 300.00016 * 1 2 3 26 26 H 1.09006 * 109.47131 * 60.00185 * 1 2 3 27 27 H 1.09000 * 109.47355 * 239.99984 * 2 1 3 28 28 H 1.09002 * 109.46818 * 119.99434 * 2 1 3 29 29 H 1.09003 * 109.46734 * 30.00511 * 4 3 2 30 30 H 1.09000 * 109.47060 * 150.00233 * 4 3 2 31 31 H 1.08997 * 109.47094 * 300.00069 * 5 4 3 32 32 H 1.09000 * 109.46873 * 60.00187 * 5 4 3 33 33 H 0.96993 * 120.00399 * 0.02562 * 6 5 4 34 34 H 0.97002 * 119.99727 * 180.02562 * 10 9 7 35 35 H 1.08010 * 120.40118 * 359.97432 * 18 17 15 36 36 H 1.07997 * 120.72040 * 179.97438 * 19 18 17 37 37 H 1.07998 * 120.35025 * 180.27749 * 20 19 18 38 38 H 0.96700 * 114.00032 * 269.72903 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4112 2.0193 -1.2589 5 6 3.8974 1.7644 -1.5178 6 7 4.2901 2.4019 -2.7769 7 6 5.5830 2.3074 -3.2181 8 1 6.3131 1.7625 -2.6381 9 6 5.9553 2.9119 -4.4110 10 7 5.0654 3.5755 -5.1181 11 14 7.7187 2.7824 -5.0132 12 1 8.5158 1.9884 -4.0439 13 1 7.7413 2.1133 -6.3387 14 1 8.3013 4.1429 -5.1354 15 6 2.1061 2.0650 1.1582 16 8 2.4564 3.2285 1.1518 17 6 1.7755 1.3980 2.4390 18 6 2.0030 2.0618 3.6408 19 6 1.6891 1.4276 4.8341 20 6 1.1529 0.1529 4.7847 21 6 0.9555 -0.4559 3.5481 22 8 0.4349 -1.7074 3.4924 23 7 1.2637 0.1723 2.4297 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8901 29 1 1.8231 1.6024 -2.0765 30 1 2.2327 3.0926 -1.1934 31 1 4.4853 2.1813 -0.7001 32 1 4.0759 0.6911 -1.5832 33 1 3.6344 2.8910 -3.2981 34 1 5.3255 3.9977 -5.9519 35 1 2.4190 3.0586 3.6444 36 1 1.8559 1.9196 5.7809 37 1 0.8938 -0.3658 5.6958 38 1 1.0985 -2.4106 3.5097 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268441963.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:57 Heat of formation + Delta-G solvation = -28.019988 kcal Electronic energy + Delta-G solvation = -21539.093830 eV Core-core repulsion = 18189.408629 eV Total energy + Delta-G solvation = -3349.685201 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.02487 -40.44093 -37.97145 -37.58307 -36.43702 -34.03788 -33.25162 -31.56403 -31.47953 -29.31330 -26.39422 -25.18789 -24.26779 -24.19795 -23.22326 -21.01736 -19.45857 -19.28063 -18.50390 -17.61060 -17.28736 -16.93773 -16.74265 -16.48180 -16.03300 -15.43841 -15.27474 -15.15308 -15.10730 -14.62581 -14.20360 -13.89556 -13.59601 -13.18509 -13.09415 -12.95565 -12.81714 -12.75797 -12.67706 -12.37145 -12.10187 -11.99129 -11.87633 -11.47955 -11.00824 -10.91276 -10.16777 -10.10074 -9.66322 -9.08995 -7.98960 -5.30385 -0.45681 0.11181 1.45718 1.48023 1.57776 1.59249 1.79483 2.48164 2.55008 2.70036 3.27281 3.34430 3.76428 3.92123 4.01053 4.04155 4.06089 4.18097 4.25415 4.35148 4.49915 4.52557 4.56470 4.69292 4.85649 4.94623 5.02364 5.04108 5.10158 5.16935 5.36216 5.43016 5.51180 5.58711 6.22058 6.26860 6.52653 6.76710 7.00821 7.28376 7.98724 8.25278 9.24692 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.029176 B = 0.003525 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.478121 B = 7940.851837 C = 8216.741503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.099 3.901 3 N -0.585 5.585 4 C 0.119 3.881 5 C 0.152 3.848 6 N -0.743 5.743 7 C -0.252 4.252 8 H 0.074 0.926 9 C -0.073 4.073 10 N -0.968 5.968 11 Si 0.980 3.020 12 H -0.267 1.267 13 H -0.287 1.287 14 H -0.291 1.291 15 C 0.555 3.445 16 O -0.572 6.572 17 C 0.082 3.918 18 C -0.129 4.129 19 C -0.054 4.054 20 C -0.149 4.149 21 C 0.297 3.703 22 O -0.484 6.484 23 N -0.478 5.478 24 H 0.081 0.919 25 H 0.043 0.957 26 H 0.040 0.960 27 H 0.074 0.926 28 H 0.122 0.878 29 H 0.094 0.906 30 H 0.065 0.935 31 H 0.002 0.998 32 H 0.029 0.971 33 H 0.376 0.624 34 H 0.254 0.746 35 H 0.145 0.855 36 H 0.185 0.815 37 H 0.180 0.820 38 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.887 -12.527 23.769 28.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.023 4.023 3 N -0.315 5.315 4 C -0.004 4.004 5 C 0.024 3.976 6 N -0.386 5.386 7 C -0.383 4.383 8 H 0.092 0.908 9 C -0.265 4.265 10 N -0.618 5.618 11 Si 0.808 3.192 12 H -0.191 1.191 13 H -0.214 1.214 14 H -0.218 1.218 15 C 0.343 3.657 16 O -0.452 6.452 17 C -0.054 4.054 18 C -0.151 4.151 19 C -0.079 4.079 20 C -0.170 4.170 21 C 0.116 3.884 22 O -0.294 6.294 23 N -0.201 5.201 24 H 0.100 0.900 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.092 0.908 28 H 0.139 0.861 29 H 0.112 0.888 30 H 0.083 0.917 31 H 0.020 0.980 32 H 0.047 0.953 33 H 0.208 0.792 34 H 0.063 0.937 35 H 0.163 0.837 36 H 0.202 0.798 37 H 0.198 0.802 38 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -11.218 -12.178 22.960 28.307 hybrid contribution 1.164 0.599 -0.346 1.354 sum -10.054 -11.579 22.613 27.323 Atomic orbital electron populations 1.21893 0.94902 1.02639 1.00298 1.22314 0.95400 0.79900 1.04651 1.47945 1.62179 1.15757 1.05648 1.21435 0.94897 0.98534 0.85535 1.20908 0.93600 0.95599 0.87480 1.42394 1.09168 1.64128 1.22915 1.19634 0.87828 1.27459 1.03409 0.90830 1.25649 1.02329 1.00565 0.97989 1.69833 1.34965 1.40640 1.16360 0.84989 0.79218 0.77108 0.77891 1.19088 1.21389 1.21846 1.18530 0.77460 0.85475 0.84227 1.90779 1.49611 1.17684 1.87088 1.20520 1.00438 0.91143 0.93280 1.22269 0.98945 1.01768 0.92074 1.21944 0.93341 0.93680 0.98924 1.22729 0.98326 0.96695 0.99208 1.19575 0.92637 0.88198 0.88023 1.84778 1.36534 1.12384 1.95719 1.67504 1.11611 1.08850 1.32176 0.89996 0.93749 0.94102 0.90767 0.86060 0.88780 0.91697 0.97963 0.95311 0.79200 0.93738 0.83710 0.79785 0.80224 0.71650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 9.57 71.98 0.69 -2.49 16 2 C 0.10 2.50 5.70 86.38 0.49 2.99 16 3 N -0.59 -19.10 2.49 -824.87 -2.05 -21.16 16 4 C 0.12 4.54 5.51 86.38 0.48 5.02 16 5 C 0.15 6.86 6.58 86.38 0.57 7.43 16 6 N -0.74 -40.79 5.60 -343.46 -1.92 -42.72 16 7 C -0.25 -14.88 9.99 84.03 0.84 -14.04 16 8 H 0.07 4.21 7.83 -2.91 -0.02 4.18 16 9 C -0.07 -4.34 5.50 84.86 0.47 -3.87 16 10 N -0.97 -60.98 13.06 21.65 0.28 -60.70 16 11 Si 0.98 47.41 29.55 68.60 2.03 49.44 16 12 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 13 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 14 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 15 C 0.56 19.06 7.60 86.88 0.66 19.72 16 16 O -0.57 -23.93 15.90 -3.75 -0.06 -23.99 16 17 C 0.08 2.13 6.52 41.85 0.27 2.41 16 18 C -0.13 -2.62 9.62 22.61 0.22 -2.40 16 19 C -0.05 -0.61 10.16 22.42 0.23 -0.38 16 20 C -0.15 -1.51 10.05 22.54 0.23 -1.28 16 21 C 0.30 4.56 7.74 84.92 0.66 5.22 16 22 O -0.48 -5.52 13.56 -89.84 -1.22 -6.74 16 23 N -0.48 -10.33 4.36 -298.20 -1.30 -11.63 16 24 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.04 1.12 6.75 -2.39 -0.02 1.10 16 26 H 0.04 0.97 8.14 -2.38 -0.02 0.96 16 27 H 0.07 1.82 8.02 -2.39 -0.02 1.80 16 28 H 0.12 2.87 5.24 -3.11 -0.02 2.86 16 29 H 0.09 3.27 8.07 -2.39 -0.02 3.25 16 30 H 0.06 2.75 7.38 -2.39 -0.02 2.73 16 31 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 32 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.38 21.56 7.67 -92.71 -0.71 20.85 16 34 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 35 H 0.15 3.09 7.65 -2.91 -0.02 3.07 16 36 H 0.18 0.68 8.06 -2.91 -0.02 0.65 16 37 H 0.18 0.55 8.06 -2.91 -0.02 0.53 16 38 H 0.42 0.72 9.06 -74.06 -0.67 0.04 16 Total: -1.00 -78.71 325.04 1.26 -77.45 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: -0.29 Total: 21.72 kcal Atomic # 6 Polarization: 12.52 SS G_CDS: 5.79 Total: 18.31 kcal Atomic # 7 Polarization: -131.20 SS G_CDS: -5.00 Total: -136.20 kcal Atomic # 8 Polarization: -29.44 SS G_CDS: -1.28 Total: -30.72 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 2.03 Total: 49.44 kcal Total: -78.71 1.26 -77.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268441963.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.427 kcal (2) G-P(sol) polarization free energy of solvation -78.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds