Wall clock time and date at job start Tue Mar 31 2020 00:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46504 * 109.47228 * 2 1 4 4 C 1.46501 * 119.99965 * 277.42638 * 3 2 1 5 5 C 1.53002 * 109.46835 * 269.99404 * 4 3 2 6 6 N 1.46501 * 109.46835 * 179.97438 * 5 4 3 7 7 C 1.36938 * 119.99924 * 180.02562 * 6 5 4 8 8 H 1.08003 * 119.99945 * 0.02562 * 7 6 5 9 9 C 1.38810 * 119.99853 * 180.02562 * 7 6 5 10 10 N 1.31612 * 120.00361 * 0.02562 * 9 7 6 11 11 Si 1.86810 * 119.99790 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47340 * 90.00045 * 11 9 7 13 13 H 1.48496 * 109.46982 * 210.00000 * 11 9 7 14 14 H 1.48495 * 109.46942 * 329.99869 * 11 9 7 15 15 C 1.34774 * 119.99894 * 97.42354 * 3 2 1 16 16 O 1.21517 * 120.00125 * 185.64342 * 15 3 2 17 17 C 1.48159 * 120.00140 * 5.63353 * 15 3 2 18 18 C 1.39972 * 120.89066 * 135.39181 * 17 15 3 19 19 C 1.37976 * 119.13635 * 180.02562 * 18 17 15 20 20 N 1.31915 * 120.97320 * 0.02562 * 19 18 17 21 21 C 1.32167 * 121.97370 * 359.97438 * 20 19 18 22 22 O 1.35687 * 119.62472 * 180.28409 * 21 20 19 23 23 C 1.38888 * 120.75651 * 0.02562 * 21 20 19 24 24 H 1.08999 * 109.47169 * 308.78614 * 1 2 3 25 25 H 1.08996 * 109.47496 * 68.79138 * 1 2 3 26 26 H 1.09000 * 109.46701 * 188.79033 * 1 2 3 27 27 H 1.09003 * 109.47489 * 240.00628 * 2 1 3 28 28 H 1.09003 * 109.47610 * 120.00384 * 2 1 3 29 29 H 1.08990 * 109.47180 * 29.99580 * 4 3 2 30 30 H 1.08997 * 109.46937 * 149.99639 * 4 3 2 31 31 H 1.08990 * 109.47380 * 300.00053 * 5 4 3 32 32 H 1.08997 * 109.47167 * 60.00375 * 5 4 3 33 33 H 0.96998 * 120.00086 * 0.02562 * 6 5 4 34 34 H 0.96997 * 120.00523 * 179.97438 * 10 9 7 35 35 H 1.08001 * 120.42810 * 359.97438 * 18 17 15 36 36 H 1.07998 * 119.51300 * 180.02562 * 19 18 17 37 37 H 0.96705 * 113.99549 * 269.73180 * 22 21 20 38 38 H 1.08003 * 120.53363 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1079 2.1265 -1.2581 5 6 3.4877 1.9092 -1.8824 6 7 3.5771 2.6540 -3.1408 7 6 4.7275 2.6099 -3.8823 8 1 5.5688 2.0257 -3.5396 9 6 4.8123 3.3160 -5.0744 10 7 3.7873 4.0283 -5.4918 11 14 6.3814 3.2552 -6.0863 12 1 6.3066 2.1265 -7.0484 13 1 6.5401 4.5303 -6.8306 14 1 7.5449 3.0605 -5.1843 15 6 2.3851 1.9663 1.1574 16 8 2.6923 3.1419 1.1734 17 6 2.4136 1.1762 2.4104 18 6 3.4904 1.2768 3.2991 19 6 3.4798 0.5239 4.4553 20 7 2.4739 -0.2840 4.7301 21 6 1.4368 -0.4109 3.9206 22 8 0.4253 -1.2519 4.2533 23 6 1.3681 0.3107 2.7359 24 1 -0.3633 0.6437 0.8010 25 1 -0.3634 0.3718 -0.9580 26 1 -0.3633 -1.0156 0.1571 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.3387 1.7737 -1.9449 30 1 1.9608 3.1886 -1.0624 31 1 4.2569 2.2620 -1.1956 32 1 3.6348 0.8471 -2.0781 33 1 2.8214 3.1783 -3.4487 34 1 3.8467 4.5220 -6.3246 35 1 4.3190 1.9346 3.0821 36 1 4.3073 0.5971 5.1454 37 1 0.5398 -2.1542 3.9247 38 1 0.5187 0.2045 2.0773 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268442843.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:06 Heat of formation + Delta-G solvation = -9.757129 kcal Electronic energy + Delta-G solvation = -21427.049802 eV Core-core repulsion = 18078.156538 eV Total energy + Delta-G solvation = -3348.893264 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.18602 -39.58958 -37.35029 -36.42870 -34.80237 -33.07480 -31.69161 -30.72126 -30.34732 -27.93655 -25.04844 -23.93647 -23.76596 -23.11095 -21.64152 -20.04089 -18.56076 -17.51480 -17.20259 -17.08978 -16.58972 -16.01816 -15.74708 -15.12166 -14.74513 -14.42637 -13.92900 -13.82061 -13.51185 -13.48331 -13.22246 -13.00225 -12.78570 -12.32757 -12.17882 -11.97569 -11.48323 -11.34392 -11.04711 -10.92258 -10.72408 -10.40730 -10.13464 -10.10298 -9.78996 -9.60124 -9.29873 -8.90357 -8.69426 -6.96866 -5.78641 -3.08390 0.49917 0.61660 2.51921 2.78933 3.23417 3.38788 3.42692 3.47894 3.49956 4.05373 4.35858 4.57258 4.59335 4.63319 4.70293 4.92743 5.03931 5.09427 5.24537 5.31969 5.47562 5.47995 5.52000 5.60520 5.72371 5.73101 5.94885 5.96609 6.07090 6.07524 6.44157 6.66041 6.80941 7.07637 7.29135 7.51122 7.67686 8.01799 8.39525 9.50679 10.05881 10.40986 11.44175 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.029923 B = 0.003483 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.518550 B = 8036.535899 C = 8466.728668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.091 3.909 3 N -0.596 5.596 4 C 0.106 3.894 5 C 0.143 3.857 6 N -0.730 5.730 7 C -0.240 4.240 8 H 0.070 0.930 9 C -0.013 4.013 10 N -0.933 5.933 11 Si 0.909 3.091 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.282 1.282 15 C 0.554 3.446 16 O -0.516 6.516 17 C -0.059 4.059 18 C -0.133 4.133 19 C 0.124 3.876 20 N -0.494 5.494 21 C 0.306 3.694 22 O -0.479 6.479 23 C -0.172 4.172 24 H 0.061 0.939 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.022 0.978 32 H 0.019 0.981 33 H 0.384 0.616 34 H 0.256 0.744 35 H 0.150 0.850 36 H 0.169 0.831 37 H 0.401 0.599 38 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.768 -12.624 17.805 22.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.032 4.032 3 N -0.328 5.328 4 C -0.016 4.016 5 C 0.015 3.985 6 N -0.375 5.375 7 C -0.371 4.371 8 H 0.088 0.912 9 C -0.209 4.209 10 N -0.581 5.581 11 Si 0.740 3.260 12 H -0.217 1.217 13 H -0.217 1.217 14 H -0.207 1.207 15 C 0.341 3.659 16 O -0.391 6.391 17 C -0.070 4.070 18 C -0.154 4.154 19 C -0.033 4.033 20 N -0.214 5.214 21 C 0.127 3.873 22 O -0.286 6.286 23 C -0.193 4.193 24 H 0.080 0.920 25 H 0.087 0.913 26 H 0.090 0.910 27 H 0.105 0.895 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.107 0.893 31 H 0.040 0.960 32 H 0.037 0.963 33 H 0.218 0.782 34 H 0.066 0.934 35 H 0.168 0.832 36 H 0.186 0.814 37 H 0.258 0.742 38 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -6.720 -12.037 18.747 23.270 hybrid contribution 0.687 0.130 -1.680 1.819 sum -6.032 -11.906 17.068 21.667 Atomic orbital electron populations 1.22355 0.95610 1.02491 1.03160 1.21889 0.94583 0.82698 1.04051 1.47840 1.63662 1.14285 1.07057 1.21783 0.99293 0.97676 0.82804 1.20896 0.93436 0.95301 0.88909 1.42198 1.16658 1.57684 1.20939 1.19196 0.92430 1.24498 1.01010 0.91184 1.24751 0.97844 0.99951 0.98318 1.69654 1.30012 1.35069 1.23378 0.86161 0.82731 0.76966 0.80164 1.21674 1.21682 1.20718 1.18221 0.77858 0.86831 0.83017 1.90850 1.47489 1.15188 1.85598 1.20338 0.95206 0.95704 0.95744 1.22299 0.99045 0.99702 0.94347 1.22532 0.95099 0.90727 0.94926 1.67029 1.01225 1.20332 1.32771 1.19022 0.86793 0.93019 0.88451 1.84816 1.39603 1.24496 1.79721 1.22879 1.00758 0.97994 0.97635 0.91987 0.91261 0.90989 0.89487 0.89880 0.90054 0.89309 0.96022 0.96344 0.78208 0.93429 0.83245 0.81406 0.74155 0.82310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.38 9.13 37.15 0.34 -1.04 16 2 C 0.09 0.87 5.60 -4.04 -0.02 0.85 16 3 N -0.60 -8.12 2.48 -174.68 -0.43 -8.55 16 4 C 0.11 1.77 5.58 -4.04 -0.02 1.74 16 5 C 0.14 2.95 6.58 -4.04 -0.03 2.92 16 6 N -0.73 -18.79 5.60 -59.91 -0.34 -19.12 16 7 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 8 H 0.07 1.94 7.83 -52.48 -0.41 1.52 16 9 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 10 N -0.93 -28.33 13.06 55.49 0.72 -27.60 16 11 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 14 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 15 C 0.55 8.30 7.34 -12.19 -0.09 8.21 16 16 O -0.52 -9.85 16.56 5.35 0.09 -9.76 16 17 C -0.06 -0.70 5.13 -104.67 -0.54 -1.23 16 18 C -0.13 -1.40 9.81 -39.03 -0.38 -1.79 16 19 C 0.12 1.14 11.17 -17.61 -0.20 0.95 16 20 N -0.49 -5.36 10.36 -13.38 -0.14 -5.50 16 21 C 0.31 3.06 7.74 -17.17 -0.13 2.93 16 22 O -0.48 -3.93 13.56 -18.76 -0.25 -4.18 16 23 C -0.17 -1.69 7.45 -38.84 -0.29 -1.98 16 24 H 0.06 0.50 6.38 -51.93 -0.33 0.17 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.09 0.83 8.12 -51.93 -0.42 0.41 16 28 H 0.08 0.68 5.06 -51.93 -0.26 0.42 16 29 H 0.08 1.22 8.07 -51.93 -0.42 0.81 16 30 H 0.09 1.65 7.35 -51.93 -0.38 1.27 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.38 10.27 7.67 -40.82 -0.31 9.95 16 34 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 35 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 36 H 0.17 1.01 8.06 -52.49 -0.42 0.59 16 37 H 0.40 1.17 9.06 45.56 0.41 1.59 16 38 H 0.16 1.33 3.74 -52.48 -0.20 1.13 16 LS Contribution 323.79 15.07 4.88 4.88 Total: -1.00 -35.83 323.79 -6.10 -41.92 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -4.00 Total: 6.30 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: -1.61 Total: 4.13 kcal Atomic # 7 Polarization: -60.59 SS G_CDS: -0.18 Total: -60.77 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -0.17 Total: -13.94 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -35.83 -6.10 -41.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268442843.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.167 kcal (2) G-P(sol) polarization free energy of solvation -35.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds