Wall clock time and date at job start Tue Mar 31 2020 00:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46504 * 109.47228 * 2 1 4 4 C 1.46501 * 119.99965 * 277.42638 * 3 2 1 5 5 C 1.53002 * 109.46835 * 269.99404 * 4 3 2 6 6 N 1.46501 * 109.46835 * 179.97438 * 5 4 3 7 7 C 1.36938 * 119.99924 * 180.02562 * 6 5 4 8 8 H 1.08003 * 119.99945 * 0.02562 * 7 6 5 9 9 C 1.38810 * 119.99853 * 180.02562 * 7 6 5 10 10 N 1.31612 * 120.00361 * 0.02562 * 9 7 6 11 11 Si 1.86810 * 119.99790 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47340 * 90.00045 * 11 9 7 13 13 H 1.48496 * 109.46982 * 210.00000 * 11 9 7 14 14 H 1.48495 * 109.46942 * 329.99869 * 11 9 7 15 15 C 1.34774 * 119.99894 * 97.42354 * 3 2 1 16 16 O 1.21517 * 120.00125 * 185.64342 * 15 3 2 17 17 C 1.48159 * 120.00140 * 5.63353 * 15 3 2 18 18 C 1.39972 * 120.89066 * 135.39181 * 17 15 3 19 19 C 1.37976 * 119.13635 * 180.02562 * 18 17 15 20 20 N 1.31915 * 120.97320 * 0.02562 * 19 18 17 21 21 C 1.32167 * 121.97370 * 359.97438 * 20 19 18 22 22 O 1.35687 * 119.62472 * 180.28409 * 21 20 19 23 23 C 1.38888 * 120.75651 * 0.02562 * 21 20 19 24 24 H 1.08999 * 109.47169 * 308.78614 * 1 2 3 25 25 H 1.08996 * 109.47496 * 68.79138 * 1 2 3 26 26 H 1.09000 * 109.46701 * 188.79033 * 1 2 3 27 27 H 1.09003 * 109.47489 * 240.00628 * 2 1 3 28 28 H 1.09003 * 109.47610 * 120.00384 * 2 1 3 29 29 H 1.08990 * 109.47180 * 29.99580 * 4 3 2 30 30 H 1.08997 * 109.46937 * 149.99639 * 4 3 2 31 31 H 1.08990 * 109.47380 * 300.00053 * 5 4 3 32 32 H 1.08997 * 109.47167 * 60.00375 * 5 4 3 33 33 H 0.96998 * 120.00086 * 0.02562 * 6 5 4 34 34 H 0.96997 * 120.00523 * 179.97438 * 10 9 7 35 35 H 1.08001 * 120.42810 * 359.97438 * 18 17 15 36 36 H 1.07998 * 119.51300 * 180.02562 * 19 18 17 37 37 H 0.96705 * 113.99549 * 269.73180 * 22 21 20 38 38 H 1.08003 * 120.53363 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1079 2.1265 -1.2581 5 6 3.4877 1.9092 -1.8824 6 7 3.5771 2.6540 -3.1408 7 6 4.7275 2.6099 -3.8823 8 1 5.5688 2.0257 -3.5396 9 6 4.8123 3.3160 -5.0744 10 7 3.7873 4.0283 -5.4918 11 14 6.3814 3.2552 -6.0863 12 1 6.3066 2.1265 -7.0484 13 1 6.5401 4.5303 -6.8306 14 1 7.5449 3.0605 -5.1843 15 6 2.3851 1.9663 1.1574 16 8 2.6923 3.1419 1.1734 17 6 2.4136 1.1762 2.4104 18 6 3.4904 1.2768 3.2991 19 6 3.4798 0.5239 4.4553 20 7 2.4739 -0.2840 4.7301 21 6 1.4368 -0.4109 3.9206 22 8 0.4253 -1.2519 4.2533 23 6 1.3681 0.3107 2.7359 24 1 -0.3633 0.6437 0.8010 25 1 -0.3634 0.3718 -0.9580 26 1 -0.3633 -1.0156 0.1571 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.3387 1.7737 -1.9449 30 1 1.9608 3.1886 -1.0624 31 1 4.2569 2.2620 -1.1956 32 1 3.6348 0.8471 -2.0781 33 1 2.8214 3.1783 -3.4487 34 1 3.8467 4.5220 -6.3246 35 1 4.3190 1.9346 3.0821 36 1 4.3073 0.5971 5.1454 37 1 0.5398 -2.1542 3.9247 38 1 0.5187 0.2045 2.0773 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268442843.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:05 Heat of formation + Delta-G solvation = -39.005602 kcal Electronic energy + Delta-G solvation = -21428.318111 eV Core-core repulsion = 18078.156538 eV Total energy + Delta-G solvation = -3350.161573 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.08351 -40.60134 -38.06781 -37.66309 -36.53202 -34.26628 -33.21124 -31.88437 -31.16782 -29.50750 -26.40747 -25.20599 -24.59886 -24.23603 -23.19161 -21.03293 -19.57490 -19.12288 -18.31569 -18.08261 -17.44309 -17.07042 -16.88448 -16.39730 -16.09271 -15.57442 -15.32571 -15.22925 -15.04798 -14.60053 -14.35719 -14.15751 -13.78612 -13.14533 -13.08816 -12.93823 -12.85516 -12.78051 -12.66060 -12.36548 -12.17673 -12.14627 -11.89051 -11.50254 -10.99504 -10.96218 -10.49421 -10.03629 -9.88893 -9.08831 -7.99235 -5.30342 -0.36181 -0.10978 1.41487 1.46591 1.48617 1.57123 1.72776 2.50761 2.54346 2.63104 3.13412 3.34366 3.65426 3.80894 3.86350 3.92323 4.02446 4.09761 4.14976 4.31573 4.32527 4.42929 4.51043 4.56494 4.64855 4.80098 4.84448 4.96209 5.00403 5.05644 5.31677 5.36713 5.40804 5.46416 6.18030 6.22059 6.57335 6.82439 6.86835 7.28538 7.99368 8.24758 9.24055 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.029923 B = 0.003483 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.518550 B = 8036.535899 C = 8466.728668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.085 3.915 3 N -0.591 5.591 4 C 0.121 3.879 5 C 0.149 3.851 6 N -0.743 5.743 7 C -0.252 4.252 8 H 0.074 0.926 9 C -0.071 4.071 10 N -0.967 5.967 11 Si 0.977 3.023 12 H -0.281 1.281 13 H -0.294 1.294 14 H -0.271 1.271 15 C 0.551 3.449 16 O -0.569 6.569 17 C -0.073 4.073 18 C -0.143 4.143 19 C 0.133 3.867 20 N -0.511 5.511 21 C 0.310 3.690 22 O -0.484 6.484 23 C -0.164 4.164 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.103 0.897 27 H 0.091 0.909 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.064 0.936 31 H 0.001 0.999 32 H 0.032 0.968 33 H 0.376 0.624 34 H 0.254 0.746 35 H 0.149 0.851 36 H 0.200 0.800 37 H 0.424 0.576 38 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.865 -14.861 18.761 24.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.037 4.037 3 N -0.323 5.323 4 C -0.002 4.002 5 C 0.021 3.979 6 N -0.386 5.386 7 C -0.384 4.384 8 H 0.092 0.908 9 C -0.264 4.264 10 N -0.617 5.617 11 Si 0.806 3.194 12 H -0.208 1.208 13 H -0.220 1.220 14 H -0.196 1.196 15 C 0.339 3.661 16 O -0.448 6.448 17 C -0.084 4.084 18 C -0.163 4.163 19 C -0.023 4.023 20 N -0.231 5.231 21 C 0.131 3.869 22 O -0.295 6.295 23 C -0.185 4.185 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.122 0.878 27 H 0.110 0.890 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.082 0.918 31 H 0.019 0.981 32 H 0.050 0.950 33 H 0.208 0.792 34 H 0.062 0.938 35 H 0.167 0.833 36 H 0.217 0.783 37 H 0.286 0.714 38 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -6.832 -14.364 19.729 25.342 hybrid contribution 0.682 0.741 -1.887 2.139 sum -6.149 -13.623 17.842 23.275 Atomic orbital electron populations 1.22334 0.93798 1.04371 1.02641 1.22219 0.96028 0.80237 1.05178 1.47913 1.63104 1.15639 1.05601 1.21405 0.97404 0.97022 0.84362 1.20943 0.95226 0.94983 0.86729 1.42379 1.15791 1.58150 1.22303 1.19584 0.93296 1.24116 1.01375 0.90814 1.25616 1.01153 0.99982 0.99652 1.69808 1.32047 1.36109 1.23758 0.85092 0.79083 0.76764 0.78504 1.20783 1.22012 1.19625 1.18755 0.76656 0.86454 0.84191 1.90816 1.49920 1.17559 1.86548 1.20144 0.96857 0.96654 0.94737 1.22415 0.98918 1.00206 0.94778 1.22972 0.95429 0.89367 0.94578 1.67136 1.01833 1.20898 1.33224 1.19105 0.86707 0.93024 0.88043 1.84772 1.38930 1.25981 1.79831 1.22915 1.00425 0.97187 0.97980 0.92274 0.92063 0.87825 0.89040 0.88090 0.88144 0.91761 0.98084 0.94970 0.79180 0.93752 0.83342 0.78316 0.71418 0.80864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 9.13 71.98 0.66 -1.58 16 2 C 0.08 1.45 5.60 86.38 0.48 1.93 16 3 N -0.59 -15.90 2.48 -824.87 -2.04 -17.94 16 4 C 0.12 4.08 5.58 86.38 0.48 4.56 16 5 C 0.15 6.21 6.58 86.38 0.57 6.78 16 6 N -0.74 -38.91 5.60 -343.46 -1.92 -40.84 16 7 C -0.25 -14.42 9.99 84.03 0.84 -13.58 16 8 H 0.07 4.07 7.83 -2.91 -0.02 4.04 16 9 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 10 N -0.97 -59.55 13.06 21.65 0.28 -59.27 16 11 Si 0.98 46.33 29.55 68.60 2.03 48.36 16 12 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 13 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 14 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 15 C 0.55 16.71 7.34 86.88 0.64 17.35 16 16 O -0.57 -22.74 16.56 -3.77 -0.06 -22.81 16 17 C -0.07 -1.67 5.13 -19.90 -0.10 -1.78 16 18 C -0.14 -2.89 9.81 22.63 0.22 -2.67 16 19 C 0.13 2.19 11.17 84.62 0.94 3.14 16 20 N -0.51 -9.89 10.36 -309.15 -3.20 -13.09 16 21 C 0.31 5.44 7.74 84.80 0.66 6.09 16 22 O -0.48 -6.46 13.56 -90.05 -1.22 -7.68 16 23 C -0.16 -2.90 7.45 22.75 0.17 -2.73 16 24 H 0.06 0.82 6.38 -2.39 -0.02 0.80 16 25 H 0.06 0.91 8.14 -2.39 -0.02 0.90 16 26 H 0.10 0.71 8.14 -2.39 -0.02 0.70 16 27 H 0.09 1.53 8.12 -2.39 -0.02 1.51 16 28 H 0.10 1.40 5.06 -2.39 -0.01 1.39 16 29 H 0.10 2.99 8.07 -2.39 -0.02 2.97 16 30 H 0.06 2.50 7.35 -2.39 -0.02 2.48 16 31 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 32 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.38 20.64 7.67 -92.71 -0.71 19.93 16 34 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 35 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 36 H 0.20 1.86 8.06 -2.91 -0.02 1.84 16 37 H 0.42 1.02 9.06 -74.05 -0.67 0.35 16 38 H 0.17 2.45 3.74 -2.91 -0.01 2.44 16 Total: -1.00 -78.19 323.79 -0.39 -78.58 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: -0.27 Total: 20.85 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: 6.03 Total: 13.83 kcal Atomic # 7 Polarization: -124.25 SS G_CDS: -6.89 Total: -131.14 kcal Atomic # 8 Polarization: -29.21 SS G_CDS: -1.28 Total: -30.49 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -78.19 -0.39 -78.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268442843.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.576 kcal (2) G-P(sol) polarization free energy of solvation -78.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds