Wall clock time and date at job start Tue Mar 31 2020 01:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36939 * 119.99742 * 2 1 4 4 H 1.08000 * 120.00002 * 154.05022 * 3 2 1 5 5 C 1.38816 * 120.00138 * 334.04544 * 3 2 1 6 6 N 1.31614 * 119.99847 * 159.70710 * 5 3 2 7 7 Si 1.86805 * 119.99759 * 339.98810 * 5 3 2 8 8 H 1.48500 * 109.47080 * 84.69767 * 7 5 3 9 9 H 1.48504 * 109.46748 * 204.69651 * 7 5 3 10 10 H 1.48497 * 109.47026 * 324.69714 * 7 5 3 11 11 C 1.46499 * 120.00365 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.47100 * 275.40463 * 11 2 1 13 13 H 1.09002 * 109.87430 * 57.88987 * 12 11 2 14 14 C 1.54321 * 109.88428 * 296.87232 * 12 11 2 15 15 C 1.55152 * 102.94405 * 218.39293 * 14 12 11 16 16 C 1.54911 * 101.58279 * 35.49578 * 15 14 12 17 17 N 1.47023 * 109.87989 * 179.06325 * 12 11 2 18 18 C 1.34777 * 125.65003 * 298.33401 * 17 12 11 19 19 O 1.21615 * 119.99929 * 4.81335 * 18 17 12 20 20 C 1.47420 * 120.00178 * 184.80764 * 18 17 12 21 21 C 1.36092 * 126.44820 * 179.71694 * 20 18 17 22 22 O 1.34261 * 106.94683 * 179.90185 * 21 20 18 23 23 C 1.34047 * 108.22654 * 0.36396 * 22 21 20 24 24 N 1.29935 * 109.24572 * 359.76993 * 23 22 21 25 25 H 1.09004 * 109.47472 * 89.62843 * 1 2 3 26 26 H 1.09006 * 109.47097 * 209.62363 * 1 2 3 27 27 H 1.09002 * 109.47777 * 329.61872 * 1 2 3 28 28 H 0.97004 * 119.99557 * 180.02562 * 6 5 3 29 29 H 1.09007 * 109.46837 * 35.40644 * 11 2 1 30 30 H 1.09001 * 109.46966 * 155.40183 * 11 2 1 31 31 H 1.09004 * 110.71647 * 336.75561 * 14 12 11 32 32 H 1.08999 * 110.72233 * 100.02353 * 14 12 11 33 33 H 1.09000 * 111.00579 * 153.57501 * 15 14 12 34 34 H 1.09005 * 110.99922 * 277.42940 * 15 14 12 35 35 H 1.09012 * 110.36027 * 81.83270 * 16 15 14 36 36 H 1.09001 * 110.36833 * 204.03817 * 16 15 14 37 37 H 1.07998 * 126.52443 * 0.03332 * 21 20 18 38 38 H 1.08006 * 125.38086 * 179.73763 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1479 1.2332 0.4093 5 6 1.5605 2.3275 -0.5261 6 7 2.0106 3.5167 -0.1861 7 14 0.1239 2.1760 -1.7106 8 1 -1.1396 2.0430 -0.9418 9 1 0.0577 3.3881 -2.5659 10 1 0.3118 0.9764 -2.5656 11 6 2.1975 -1.2687 -0.0006 12 6 2.3349 -1.7789 1.4353 13 1 1.3479 -1.8985 1.8821 14 6 3.1710 -0.7844 2.2680 15 6 4.0238 -1.7163 3.1688 16 6 4.2954 -2.9069 2.2156 17 7 3.0496 -3.0637 1.4431 18 6 2.6344 -4.1972 0.8438 19 8 1.6301 -4.1898 0.1581 20 6 3.3978 -5.4461 1.0194 21 6 3.0967 -6.6600 0.4826 22 8 4.0479 -7.5151 0.8907 23 6 4.9098 -6.8439 1.6676 24 7 4.5327 -5.6035 1.7533 25 1 -0.3634 0.0067 -1.0277 26 1 -0.3633 -0.8934 0.5080 27 1 -0.3635 0.8865 0.5197 28 1 1.5986 4.3143 -0.5535 29 1 1.6538 -2.0019 -0.5963 30 1 3.1884 -1.1158 -0.4283 31 1 3.8098 -0.1822 1.6219 32 1 2.5243 -0.1491 2.8732 33 1 4.9545 -1.2310 3.4627 34 1 3.4591 -2.0376 4.0440 35 1 5.1280 -2.6779 1.5503 36 1 4.5054 -3.8106 2.7877 37 1 2.2544 -6.8908 -0.1526 38 1 5.7801 -7.2674 2.1470 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275093647.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:30 Heat of formation + Delta-G solvation = 32.156615 kcal Electronic energy + Delta-G solvation = -22236.988181 eV Core-core repulsion = 18889.912433 eV Total energy + Delta-G solvation = -3347.075748 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.63290 -39.83216 -37.34916 -35.55016 -35.00432 -31.69451 -31.33497 -30.49109 -29.51351 -26.07800 -25.43662 -24.65170 -22.99156 -22.28545 -21.23424 -20.43181 -19.27502 -17.68921 -16.99962 -16.83911 -16.65362 -16.03109 -15.41187 -15.05335 -14.77456 -14.18350 -13.89442 -13.78912 -13.53174 -13.01394 -12.75689 -12.55835 -12.39355 -12.04321 -11.94637 -11.58980 -11.28598 -11.11004 -10.85013 -10.46357 -10.43219 -10.20600 -10.06935 -9.88889 -9.77657 -9.41223 -9.38560 -8.69533 -8.30714 -6.88207 -5.89858 -3.25934 0.95534 1.88129 2.45233 3.07951 3.34449 3.41970 3.55636 3.60765 3.82022 4.55678 4.61508 4.65691 4.90790 5.19312 5.21524 5.27669 5.30024 5.40805 5.46848 5.64138 5.67279 5.84367 5.98997 6.10179 6.15317 6.30589 6.36494 6.41657 6.50348 6.58538 6.68507 6.78767 6.85094 6.98336 7.21652 7.73384 8.01342 8.26183 8.38212 9.00783 9.79248 10.13858 11.26108 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.030184 B = 0.004571 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.413112 B = 6124.485154 C = 6771.457829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.607 5.607 3 C -0.261 4.261 4 H 0.089 0.911 5 C 0.025 3.975 6 N -0.910 5.910 7 Si 0.892 3.108 8 H -0.288 1.288 9 H -0.308 1.308 10 H -0.279 1.279 11 C 0.144 3.856 12 C 0.117 3.883 13 H 0.068 0.932 14 C -0.109 4.109 15 C -0.140 4.140 16 C 0.100 3.900 17 N -0.592 5.592 18 C 0.607 3.393 19 O -0.536 6.536 20 C -0.062 4.062 21 C 0.010 3.990 22 O -0.202 6.202 23 C 0.172 3.828 24 N -0.462 5.462 25 H 0.008 0.992 26 H 0.035 0.965 27 H 0.056 0.944 28 H 0.262 0.738 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.098 0.902 37 H 0.230 0.770 38 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.241 -20.721 6.471 22.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.331 5.331 3 C -0.389 4.389 4 H 0.107 0.893 5 C -0.174 4.174 6 N -0.554 5.554 7 Si 0.723 3.277 8 H -0.215 1.215 9 H -0.236 1.236 10 H -0.205 1.205 11 C 0.016 3.984 12 C 0.013 3.987 13 H 0.086 0.914 14 C -0.147 4.147 15 C -0.178 4.178 16 C -0.023 4.023 17 N -0.324 5.324 18 C 0.394 3.606 19 O -0.414 6.414 20 C -0.181 4.181 21 C -0.063 4.063 22 O -0.087 6.087 23 C -0.056 4.056 24 N -0.192 5.192 25 H 0.026 0.974 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.105 0.895 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.116 0.884 37 H 0.246 0.754 38 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 5.973 -20.121 6.388 21.939 hybrid contribution -1.033 -0.463 -1.007 1.515 sum 4.941 -20.584 5.381 21.842 Atomic orbital electron populations 1.21378 0.84709 1.00093 0.97882 1.44075 1.00588 1.02068 1.86359 1.18946 1.01407 0.84364 1.34214 0.89329 1.25219 0.98176 0.95138 0.98876 1.69836 1.43788 0.97056 1.44676 0.86936 0.82826 0.75519 0.82377 1.21479 1.23609 1.20521 1.21094 0.96983 0.87889 0.92404 1.22538 0.95149 0.80651 1.00403 0.91353 1.22597 0.98344 0.96291 0.97467 1.22872 1.00856 0.96258 0.97806 1.22560 0.86074 0.99826 0.93849 1.48391 1.23272 1.09702 1.51039 1.16360 0.83503 0.80877 0.79899 1.90835 1.25955 1.84926 1.39674 1.21879 0.96599 0.96234 1.03416 1.25298 0.93503 0.87509 1.00033 1.84431 1.31427 1.40898 1.51932 1.28198 0.96460 0.86633 0.94329 1.70867 1.11117 1.17571 1.19631 0.97425 0.94637 0.92551 0.92859 0.93032 0.92518 0.89547 0.90044 0.90211 0.91404 0.91736 0.88443 0.75379 0.73106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.44 8.37 59.84 0.50 2.94 16 2 N -0.61 -14.92 2.55 -181.11 -0.46 -15.38 16 3 C -0.26 -7.25 9.31 -15.06 -0.14 -7.39 16 4 H 0.09 2.55 6.62 -52.49 -0.35 2.20 16 5 C 0.02 0.72 5.25 -17.43 -0.09 0.63 16 6 N -0.91 -27.95 13.97 55.49 0.78 -27.17 16 7 Si 0.89 23.41 23.96 -169.99 -4.07 19.34 16 8 H -0.29 -7.26 6.49 56.52 0.37 -6.89 16 9 H -0.31 -8.17 7.11 56.52 0.40 -7.77 16 10 H -0.28 -7.40 6.77 56.52 0.38 -7.02 16 11 C 0.14 3.10 5.09 -4.04 -0.02 3.08 16 12 C 0.12 2.15 3.17 -66.95 -0.21 1.94 16 13 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 14 C -0.11 -1.86 5.68 -24.90 -0.14 -2.00 16 15 C -0.14 -1.84 7.08 -24.58 -0.17 -2.01 16 16 C 0.10 1.35 6.31 -2.53 -0.02 1.34 16 17 N -0.59 -9.69 3.06 -164.27 -0.50 -10.19 16 18 C 0.61 10.07 7.66 -12.52 -0.10 9.98 16 19 O -0.54 -10.34 15.73 5.26 0.08 -10.26 16 20 C -0.06 -0.81 6.82 -83.02 -0.57 -1.37 16 21 C 0.01 0.10 11.95 29.96 0.36 0.46 16 22 O -0.20 -1.71 10.73 6.51 0.07 -1.64 16 23 C 0.17 1.27 13.19 51.96 0.69 1.96 16 24 N -0.46 -5.16 8.36 -11.48 -0.10 -5.26 16 25 H 0.01 0.19 5.15 -51.93 -0.27 -0.07 16 26 H 0.03 0.73 8.07 -51.93 -0.42 0.31 16 27 H 0.06 1.36 6.33 -51.93 -0.33 1.03 16 28 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 29 H 0.05 1.16 6.63 -51.92 -0.34 0.81 16 30 H 0.06 1.25 7.97 -51.93 -0.41 0.83 16 31 H 0.09 1.65 6.29 -51.93 -0.33 1.32 16 32 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 33 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.88 8.14 -51.92 -0.42 0.45 16 36 H 0.10 1.22 5.87 -51.93 -0.30 0.92 16 37 H 0.23 1.76 8.06 -52.49 -0.42 1.34 16 38 H 0.25 0.50 8.06 -52.48 -0.42 0.08 16 LS Contribution 306.69 15.07 4.62 4.62 Total: -1.00 -34.25 306.69 -4.40 -38.65 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -4.90 Total: -2.25 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: 0.09 Total: 9.55 kcal Atomic # 7 Polarization: -57.72 SS G_CDS: -0.29 Total: -58.00 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.15 Total: -11.90 kcal Atomic # 14 Polarization: 23.41 SS G_CDS: -4.07 Total: 19.34 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -34.25 -4.40 -38.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275093647.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.804 kcal (2) G-P(sol) polarization free energy of solvation -34.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds