Wall clock time and date at job start Tue Mar 31 2020 01:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36939 * 119.99742 * 2 1 4 4 H 1.08000 * 120.00002 * 154.05022 * 3 2 1 5 5 C 1.38816 * 120.00138 * 334.04544 * 3 2 1 6 6 N 1.31614 * 119.99847 * 159.70710 * 5 3 2 7 7 Si 1.86805 * 119.99759 * 339.98810 * 5 3 2 8 8 H 1.48500 * 109.47080 * 84.69767 * 7 5 3 9 9 H 1.48504 * 109.46748 * 204.69651 * 7 5 3 10 10 H 1.48497 * 109.47026 * 324.69714 * 7 5 3 11 11 C 1.46499 * 120.00365 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.47100 * 275.40463 * 11 2 1 13 13 H 1.09002 * 109.87430 * 57.88987 * 12 11 2 14 14 C 1.54321 * 109.88428 * 296.87232 * 12 11 2 15 15 C 1.55152 * 102.94405 * 218.39293 * 14 12 11 16 16 C 1.54911 * 101.58279 * 35.49578 * 15 14 12 17 17 N 1.47023 * 109.87989 * 179.06325 * 12 11 2 18 18 C 1.34777 * 125.65003 * 298.33401 * 17 12 11 19 19 O 1.21615 * 119.99929 * 4.81335 * 18 17 12 20 20 C 1.47420 * 120.00178 * 184.80764 * 18 17 12 21 21 C 1.36092 * 126.44820 * 179.71694 * 20 18 17 22 22 O 1.34261 * 106.94683 * 179.90185 * 21 20 18 23 23 C 1.34047 * 108.22654 * 0.36396 * 22 21 20 24 24 N 1.29935 * 109.24572 * 359.76993 * 23 22 21 25 25 H 1.09004 * 109.47472 * 89.62843 * 1 2 3 26 26 H 1.09006 * 109.47097 * 209.62363 * 1 2 3 27 27 H 1.09002 * 109.47777 * 329.61872 * 1 2 3 28 28 H 0.97004 * 119.99557 * 180.02562 * 6 5 3 29 29 H 1.09007 * 109.46837 * 35.40644 * 11 2 1 30 30 H 1.09001 * 109.46966 * 155.40183 * 11 2 1 31 31 H 1.09004 * 110.71647 * 336.75561 * 14 12 11 32 32 H 1.08999 * 110.72233 * 100.02353 * 14 12 11 33 33 H 1.09000 * 111.00579 * 153.57501 * 15 14 12 34 34 H 1.09005 * 110.99922 * 277.42940 * 15 14 12 35 35 H 1.09012 * 110.36027 * 81.83270 * 16 15 14 36 36 H 1.09001 * 110.36833 * 204.03817 * 16 15 14 37 37 H 1.07998 * 126.52443 * 0.03332 * 21 20 18 38 38 H 1.08006 * 125.38086 * 179.73763 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1479 1.2332 0.4093 5 6 1.5605 2.3275 -0.5261 6 7 2.0106 3.5167 -0.1861 7 14 0.1239 2.1760 -1.7106 8 1 -1.1396 2.0430 -0.9418 9 1 0.0577 3.3881 -2.5659 10 1 0.3118 0.9764 -2.5656 11 6 2.1975 -1.2687 -0.0006 12 6 2.3349 -1.7789 1.4353 13 1 1.3479 -1.8985 1.8821 14 6 3.1710 -0.7844 2.2680 15 6 4.0238 -1.7163 3.1688 16 6 4.2954 -2.9069 2.2156 17 7 3.0496 -3.0637 1.4431 18 6 2.6344 -4.1972 0.8438 19 8 1.6301 -4.1898 0.1581 20 6 3.3978 -5.4461 1.0194 21 6 3.0967 -6.6600 0.4826 22 8 4.0479 -7.5151 0.8907 23 6 4.9098 -6.8439 1.6676 24 7 4.5327 -5.6035 1.7533 25 1 -0.3634 0.0067 -1.0277 26 1 -0.3633 -0.8934 0.5080 27 1 -0.3635 0.8865 0.5197 28 1 1.5986 4.3143 -0.5535 29 1 1.6538 -2.0019 -0.5963 30 1 3.1884 -1.1158 -0.4283 31 1 3.8098 -0.1822 1.6219 32 1 2.5243 -0.1491 2.8732 33 1 4.9545 -1.2310 3.4627 34 1 3.4591 -2.0376 4.0440 35 1 5.1280 -2.6779 1.5503 36 1 4.5054 -3.8106 2.7877 37 1 2.2544 -6.8908 -0.1526 38 1 5.7801 -7.2674 2.1470 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275093647.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:29 Heat of formation + Delta-G solvation = 6.246248 kcal Electronic energy + Delta-G solvation = -22238.111739 eV Core-core repulsion = 18889.912433 eV Total energy + Delta-G solvation = -3348.199306 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.36016 -41.14707 -38.77225 -37.33365 -35.84810 -33.79055 -32.61024 -31.46082 -30.96283 -28.03098 -27.07814 -25.86712 -23.70832 -23.51581 -22.87689 -21.68703 -20.51614 -18.93349 -18.71448 -17.94929 -17.66073 -17.31852 -16.97467 -16.41274 -15.78693 -15.71710 -15.43506 -15.26784 -14.75832 -14.54069 -14.32890 -14.19775 -13.97293 -13.83979 -13.43631 -12.88028 -12.64354 -12.41863 -12.31718 -12.27604 -12.10157 -11.69152 -11.64201 -11.56349 -11.32243 -11.14475 -10.76463 -10.22698 -9.76053 -8.90613 -8.15304 -5.48409 0.12252 1.11266 1.31393 1.40913 1.49727 1.69794 1.98391 2.23131 2.43134 3.04109 3.13459 3.35275 3.61851 3.75514 3.89834 3.95336 4.03184 4.30005 4.39517 4.45659 4.51846 4.55779 4.62267 4.64787 4.76469 4.85881 4.90402 4.97140 5.08872 5.09709 5.14955 5.27776 5.40202 5.49228 5.87095 6.14609 6.41215 6.55984 6.88210 7.02569 7.61563 7.98996 9.03889 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.030184 B = 0.004571 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.413112 B = 6124.485154 C = 6771.457829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.617 5.617 3 C -0.243 4.243 4 H 0.070 0.930 5 C -0.028 4.028 6 N -0.951 5.951 7 Si 0.944 3.056 8 H -0.270 1.270 9 H -0.312 1.312 10 H -0.284 1.284 11 C 0.150 3.850 12 C 0.127 3.873 13 H 0.058 0.942 14 C -0.107 4.107 15 C -0.125 4.125 16 C 0.104 3.896 17 N -0.597 5.597 18 C 0.601 3.399 19 O -0.574 6.574 20 C -0.097 4.097 21 C 0.029 3.971 22 O -0.196 6.196 23 C 0.200 3.800 24 N -0.494 5.494 25 H 0.005 0.995 26 H 0.061 0.939 27 H 0.048 0.952 28 H 0.261 0.739 29 H 0.043 0.957 30 H 0.045 0.955 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.115 0.885 37 H 0.247 0.753 38 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.942 -23.526 7.399 25.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.342 5.342 3 C -0.373 4.373 4 H 0.087 0.913 5 C -0.223 4.223 6 N -0.598 5.598 7 Si 0.775 3.225 8 H -0.196 1.196 9 H -0.241 1.241 10 H -0.210 1.210 11 C 0.024 3.976 12 C 0.021 3.979 13 H 0.077 0.923 14 C -0.145 4.145 15 C -0.162 4.162 16 C -0.017 4.017 17 N -0.328 5.328 18 C 0.390 3.610 19 O -0.455 6.455 20 C -0.215 4.215 21 C -0.045 4.045 22 O -0.082 6.082 23 C -0.028 4.028 24 N -0.223 5.223 25 H 0.023 0.977 26 H 0.080 0.920 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.120 0.880 34 H 0.100 0.900 35 H 0.082 0.918 36 H 0.133 0.867 37 H 0.263 0.737 38 H 0.319 0.681 Dipole moment (debyes) X Y Z Total from point charges 6.684 -22.962 7.338 25.016 hybrid contribution -1.141 0.248 -1.268 1.724 sum 5.543 -22.715 6.070 24.156 Atomic orbital electron populations 1.21388 0.83778 1.00993 0.97857 1.44178 1.01351 1.02097 1.86551 1.18935 1.00690 0.85353 1.32278 0.91263 1.25740 1.00982 0.94978 1.00558 1.69931 1.45837 0.97659 1.46333 0.86071 0.81184 0.74787 0.80462 1.19629 1.24064 1.21024 1.21085 0.95715 0.86326 0.94506 1.22146 0.95472 0.82277 0.97983 0.92339 1.22440 0.98208 0.96267 0.97559 1.22857 1.01183 0.94910 0.97283 1.22670 0.84745 1.00663 0.93656 1.48459 1.23937 1.08906 1.51544 1.16904 0.83314 0.81865 0.78896 1.90795 1.27703 1.85735 1.41249 1.21462 0.98195 0.95464 1.06397 1.25587 0.93608 0.86652 0.98685 1.84493 1.31234 1.40437 1.51990 1.29334 0.96179 0.85361 0.91925 1.70761 1.11019 1.19705 1.20785 0.97679 0.92039 0.93371 0.92983 0.93910 0.93685 0.92001 0.91244 0.87981 0.89983 0.91829 0.86703 0.73717 0.68052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 4.81 8.37 127.77 1.07 5.88 16 2 N -0.62 -30.65 2.55 -726.91 -1.85 -32.50 16 3 C -0.24 -13.78 9.31 84.03 0.78 -13.00 16 4 H 0.07 4.14 6.62 -2.91 -0.02 4.12 16 5 C -0.03 -1.63 5.25 84.86 0.45 -1.18 16 6 N -0.95 -59.65 13.97 21.65 0.30 -59.35 16 7 Si 0.94 48.67 23.96 68.60 1.64 50.32 16 8 H -0.27 -13.06 6.49 99.48 0.65 -12.41 16 9 H -0.31 -16.18 7.11 99.48 0.71 -15.48 16 10 H -0.28 -14.71 6.77 99.48 0.67 -14.04 16 11 C 0.15 6.60 5.09 86.38 0.44 7.04 16 12 C 0.13 4.69 3.17 45.34 0.14 4.83 16 13 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 14 C -0.11 -3.66 5.68 31.78 0.18 -3.48 16 15 C -0.12 -3.06 7.08 31.99 0.23 -2.83 16 16 C 0.10 2.67 6.31 86.86 0.55 3.22 16 17 N -0.60 -19.29 3.06 -791.87 -2.43 -21.72 16 18 C 0.60 19.76 7.66 86.66 0.66 20.43 16 19 O -0.57 -22.34 15.73 -4.08 -0.06 -22.40 16 20 C -0.10 -2.39 6.82 40.41 0.28 -2.11 16 21 C 0.03 0.53 11.95 67.32 0.80 1.33 16 22 O -0.20 -2.62 10.73 0.38 0.00 -2.62 16 23 C 0.20 2.12 13.19 130.52 1.72 3.84 16 24 N -0.49 -9.64 8.36 -305.15 -2.55 -12.19 16 25 H 0.01 0.26 5.15 -2.38 -0.01 0.24 16 26 H 0.06 2.49 8.07 -2.38 -0.02 2.47 16 27 H 0.05 2.29 6.33 -2.39 -0.02 2.27 16 28 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 29 H 0.04 1.95 6.63 -2.38 -0.02 1.94 16 30 H 0.04 2.04 7.97 -2.39 -0.02 2.02 16 31 H 0.06 2.42 6.29 -2.39 -0.01 2.41 16 32 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.08 1.82 8.14 -2.38 -0.02 1.81 16 35 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 36 H 0.12 2.60 5.87 -2.39 -0.01 2.59 16 37 H 0.25 3.29 8.06 -2.91 -0.02 3.27 16 38 H 0.30 -0.56 8.06 -2.91 -0.02 -0.59 16 Total: -1.00 -75.85 306.69 3.34 -72.51 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: 0.98 Total: 3.99 kcal Atomic # 6 Polarization: 16.67 SS G_CDS: 7.30 Total: 23.97 kcal Atomic # 7 Polarization: -119.23 SS G_CDS: -6.53 Total: -125.76 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: -0.06 Total: -25.02 kcal Atomic # 14 Polarization: 48.67 SS G_CDS: 1.64 Total: 50.32 kcal Total: -75.85 3.34 -72.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275093647.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.755 kcal (2) G-P(sol) polarization free energy of solvation -75.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds