Wall clock time and date at job start Tue Mar 31 2020 01:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.35539 * 125.67989 * 2 1 4 4 C 1.35453 * 108.87206 * 180.26379 * 3 2 1 5 5 C 1.39831 * 107.86323 * 359.72141 * 4 3 2 6 6 C 1.37645 * 125.67761 * 179.79055 * 2 1 3 7 7 C 1.46681 * 126.23691 * 0.02562 * 6 2 1 8 8 O 1.21698 * 119.99394 * 357.22930 * 7 6 2 9 9 N 1.34770 * 120.00374 * 176.94521 * 7 6 2 10 10 C 1.46503 * 120.00150 * 175.55515 * 9 7 6 11 11 C 1.53003 * 109.47176 * 180.02562 * 10 9 7 12 12 O 1.42892 * 112.94512 * 53.40108 * 11 10 9 13 13 C 1.53950 * 113.73644 * 281.67221 * 11 10 9 14 14 N 1.47585 * 86.11287 * 222.04956 * 13 11 10 15 15 C 1.36932 * 134.48935 * 204.64060 * 14 13 11 16 16 H 1.07997 * 119.99969 * 180.02562 * 15 14 13 17 17 C 1.38815 * 120.00120 * 0.02562 * 15 14 13 18 18 N 1.31620 * 119.99946 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99860 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47282 * 60.00071 * 19 17 15 21 21 H 1.48499 * 109.46851 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46908 * 299.99659 * 19 17 15 23 23 C 1.47576 * 91.01731 * 24.64313 * 14 13 11 24 24 H 1.08994 * 109.47645 * 266.08897 * 1 2 3 25 25 H 1.09005 * 109.47098 * 26.09057 * 1 2 3 26 26 H 1.09001 * 109.47401 * 146.08452 * 1 2 3 27 27 H 1.08002 * 125.55945 * 359.97438 * 3 2 1 28 28 H 1.07992 * 126.06634 * 179.70802 * 4 3 2 29 29 H 1.08002 * 126.45514 * 180.02562 * 5 4 3 30 30 H 0.96998 * 119.99836 * 355.55192 * 9 7 6 31 31 H 1.09004 * 109.46763 * 299.99947 * 10 9 7 32 32 H 1.08998 * 109.46991 * 59.99876 * 10 9 7 33 33 H 0.96694 * 114.00430 * 309.67173 * 12 11 10 34 34 H 1.09004 * 113.76928 * 336.34782 * 13 11 10 35 35 H 1.08996 * 113.77001 * 107.75036 * 13 11 10 36 36 H 0.96999 * 119.99922 * 180.02562 * 18 17 15 37 37 H 1.09001 * 113.77043 * 221.06025 * 23 14 13 38 38 H 1.08997 * 113.87342 * 89.67181 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1010 0.0000 4 6 3.5521 0.7093 -0.0059 5 6 3.5779 -0.6888 -0.0033 6 6 2.2677 -1.1181 0.0041 7 6 1.8124 -2.5124 0.0087 8 8 0.6227 -2.7638 0.0600 9 7 2.7111 -3.5151 -0.0498 10 6 2.2640 -4.9064 0.0528 11 6 3.4733 -5.8390 -0.0414 12 8 4.5002 -5.5163 0.8984 13 6 3.9869 -6.0445 -1.4781 14 7 4.1333 -7.4675 -1.1150 15 6 4.9120 -8.4984 -1.5687 16 1 4.8263 -9.4774 -1.1209 17 6 5.8117 -8.2850 -2.6041 18 7 5.9157 -7.0920 -3.1502 19 14 6.8735 -9.6916 -3.2235 20 1 6.0031 -10.7856 -3.7242 21 1 7.7426 -9.2074 -4.3259 22 1 7.7184 -10.2000 -2.1132 23 6 3.1033 -7.3331 -0.0667 24 1 -0.3634 -0.0701 1.0252 25 1 -0.3633 0.9230 -0.4520 26 1 -0.3634 -0.8528 -0.5734 27 1 1.9081 2.1236 -0.0004 28 1 4.4132 1.3611 -0.0118 29 1 4.4583 -1.3144 -0.0062 30 1 3.6539 -3.3155 -0.1599 31 1 1.7628 -5.0574 1.0090 32 1 1.5710 -5.1262 -0.7593 33 1 4.7561 -4.5839 0.8967 34 1 3.2335 -5.8618 -2.2443 35 1 4.9332 -5.5436 -1.6822 36 1 6.5441 -6.9430 -3.8740 37 1 3.3440 -7.8610 0.8560 38 1 2.0897 -7.5288 -0.4166 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278837445.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:22 Heat of formation + Delta-G solvation = 30.854395 kcal Electronic energy + Delta-G solvation = -21601.747295 eV Core-core repulsion = 18254.615078 eV Total energy + Delta-G solvation = -3347.132217 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.45811 -39.49108 -38.32986 -34.94672 -34.13798 -32.86875 -31.97483 -29.97225 -28.14662 -26.63158 -25.92274 -24.98304 -22.78002 -21.66647 -20.58784 -19.84508 -19.26187 -18.20630 -16.78879 -16.22170 -16.00393 -15.79686 -15.32578 -14.75112 -14.65302 -14.14045 -13.93966 -13.64608 -13.45602 -13.29294 -13.06538 -12.71698 -12.49846 -12.42444 -12.24928 -12.13582 -11.75234 -11.05729 -10.90989 -10.72568 -10.45013 -10.09868 -9.77020 -9.51319 -9.23796 -8.98179 -8.87441 -8.80771 -8.32707 -6.89122 -5.76036 -3.07891 1.39947 2.52894 2.62574 3.34648 3.38089 3.41812 3.45312 3.46561 4.44591 4.52019 4.63500 4.70926 4.83007 5.02915 5.06672 5.22341 5.26193 5.28190 5.30245 5.45529 5.59023 5.75019 5.93411 5.99230 6.07940 6.29291 6.39800 6.51799 6.56424 6.64418 6.84742 7.02274 7.05694 7.17876 7.49133 7.51087 7.97067 8.12166 8.21342 9.04660 9.71077 10.57127 11.41252 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.029940 B = 0.003673 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.989838 B = 7620.986517 C = 8069.501763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.412 5.412 3 C 0.010 3.990 4 C -0.207 4.207 5 C -0.140 4.140 6 C -0.051 4.051 7 C 0.589 3.411 8 O -0.554 6.554 9 N -0.711 5.711 10 C 0.106 3.894 11 C 0.063 3.937 12 O -0.526 6.526 13 C 0.144 3.856 14 N -0.602 5.602 15 C -0.220 4.220 16 H 0.081 0.919 17 C -0.007 4.007 18 N -0.923 5.923 19 Si 0.914 3.086 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.284 1.284 23 C 0.136 3.864 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.100 0.900 27 H 0.167 0.833 28 H 0.142 0.858 29 H 0.146 0.854 30 H 0.401 0.599 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.362 0.638 34 H 0.034 0.966 35 H 0.079 0.921 36 H 0.254 0.746 37 H 0.055 0.945 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.998 16.914 6.881 19.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.085 5.085 3 C -0.126 4.126 4 C -0.231 4.231 5 C -0.166 4.166 6 C -0.164 4.164 7 C 0.377 3.623 8 O -0.434 6.434 9 N -0.362 5.362 10 C -0.019 4.019 11 C 0.021 3.979 12 O -0.329 6.329 13 C 0.018 3.982 14 N -0.327 5.327 15 C -0.348 4.348 16 H 0.098 0.902 17 C -0.204 4.204 18 N -0.570 5.570 19 Si 0.744 3.256 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.210 1.210 23 C 0.010 3.990 24 H 0.094 0.906 25 H 0.100 0.900 26 H 0.118 0.882 27 H 0.185 0.815 28 H 0.160 0.840 29 H 0.164 0.836 30 H 0.237 0.763 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.208 0.792 34 H 0.052 0.948 35 H 0.097 0.903 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.042 15.855 6.847 19.494 hybrid contribution 1.006 0.074 -0.678 1.215 sum -8.036 15.929 6.169 18.878 Atomic orbital electron populations 1.22220 0.76182 1.04703 1.04083 1.43849 1.06794 1.05017 1.52854 1.22013 0.90777 0.91426 1.08335 1.20832 0.95991 0.95076 1.11223 1.21420 0.94534 0.95599 1.05055 1.20099 0.90499 0.87611 1.18210 1.16957 0.85606 0.83461 0.76308 1.90774 1.16060 1.85029 1.51527 1.45572 1.10588 1.06141 1.73943 1.22089 0.98141 0.78959 1.02682 1.23765 0.86155 0.95134 0.92889 1.86615 1.56549 1.29857 1.59903 1.22905 0.99277 0.86178 0.89817 1.45638 1.40702 1.07600 1.38801 1.18953 1.13103 0.89130 1.13605 0.90165 1.24764 0.99880 0.97112 0.98606 1.69787 1.39174 1.20403 1.27654 0.86172 0.80085 0.81129 0.78209 1.21200 1.21557 1.21037 1.22546 0.93311 0.89562 0.93619 0.90621 0.90016 0.88192 0.81542 0.83973 0.83640 0.76310 0.91035 0.90081 0.79179 0.94813 0.90318 0.93619 0.92640 0.93240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.62 10.43 59.84 0.62 1.25 16 2 N -0.41 -4.62 3.16 -120.24 -0.38 -5.00 16 3 C 0.01 0.09 11.37 -16.91 -0.19 -0.10 16 4 C -0.21 -2.06 10.81 -39.98 -0.43 -2.49 16 5 C -0.14 -1.57 10.35 -39.12 -0.40 -1.98 16 6 C -0.05 -0.66 6.89 -81.98 -0.56 -1.22 16 7 C 0.59 8.69 7.78 -12.86 -0.10 8.59 16 8 O -0.55 -9.49 14.80 5.19 0.08 -9.41 16 9 N -0.71 -9.74 5.32 -61.61 -0.33 -10.07 16 10 C 0.11 1.63 5.28 -4.04 -0.02 1.61 16 11 C 0.06 1.16 1.52 -89.69 -0.14 1.03 16 12 O -0.53 -9.59 13.51 -35.23 -0.48 -10.06 16 13 C 0.14 3.30 6.92 -2.97 -0.02 3.28 16 14 N -0.60 -15.58 3.70 -177.81 -0.66 -16.24 16 15 C -0.22 -6.28 10.70 -15.06 -0.16 -6.45 16 16 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 17 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 18 N -0.92 -27.35 11.38 55.49 0.63 -26.71 16 19 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 C 0.14 2.82 8.34 -2.98 -0.02 2.80 16 24 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.08 0.48 8.13 -51.93 -0.42 0.06 16 26 H 0.10 1.09 6.62 -51.93 -0.34 0.74 16 27 H 0.17 0.96 8.06 -52.49 -0.42 0.54 16 28 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 29 H 0.15 1.36 7.46 -52.49 -0.39 0.97 16 30 H 0.40 4.77 6.22 -40.82 -0.25 4.52 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.08 1.31 8.05 -51.93 -0.42 0.89 16 33 H 0.36 4.95 7.61 45.56 0.35 5.30 16 34 H 0.03 0.79 8.03 -51.93 -0.42 0.38 16 35 H 0.08 1.99 7.15 -51.93 -0.37 1.62 16 36 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.05 0.94 8.10 -51.93 -0.42 0.52 16 LS Contribution 322.68 15.07 4.86 4.86 Total: -1.00 -35.20 322.68 -7.17 -42.38 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -4.35 Total: 6.94 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: -1.53 Total: 6.00 kcal Atomic # 7 Polarization: -57.29 SS G_CDS: -0.73 Total: -58.03 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.40 Total: -19.47 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -35.20 -7.17 -42.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278837445.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.230 kcal (2) G-P(sol) polarization free energy of solvation -35.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds