Wall clock time and date at job start Tue Mar 31 2020 01:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.35539 * 125.67989 * 2 1 4 4 C 1.35453 * 108.87206 * 180.26379 * 3 2 1 5 5 C 1.39831 * 107.86323 * 359.72141 * 4 3 2 6 6 C 1.37645 * 125.67761 * 179.79055 * 2 1 3 7 7 C 1.46681 * 126.23691 * 0.02562 * 6 2 1 8 8 O 1.21698 * 119.99394 * 357.22930 * 7 6 2 9 9 N 1.34770 * 120.00374 * 176.94521 * 7 6 2 10 10 C 1.46503 * 120.00150 * 175.55515 * 9 7 6 11 11 C 1.53003 * 109.47176 * 180.02562 * 10 9 7 12 12 O 1.42892 * 112.94512 * 53.40108 * 11 10 9 13 13 C 1.53950 * 113.73644 * 281.67221 * 11 10 9 14 14 N 1.47585 * 86.11287 * 222.04956 * 13 11 10 15 15 C 1.36932 * 134.48935 * 204.64060 * 14 13 11 16 16 H 1.07997 * 119.99969 * 180.02562 * 15 14 13 17 17 C 1.38815 * 120.00120 * 0.02562 * 15 14 13 18 18 N 1.31620 * 119.99946 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99860 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47282 * 60.00071 * 19 17 15 21 21 H 1.48499 * 109.46851 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46908 * 299.99659 * 19 17 15 23 23 C 1.47576 * 91.01731 * 24.64313 * 14 13 11 24 24 H 1.08994 * 109.47645 * 266.08897 * 1 2 3 25 25 H 1.09005 * 109.47098 * 26.09057 * 1 2 3 26 26 H 1.09001 * 109.47401 * 146.08452 * 1 2 3 27 27 H 1.08002 * 125.55945 * 359.97438 * 3 2 1 28 28 H 1.07992 * 126.06634 * 179.70802 * 4 3 2 29 29 H 1.08002 * 126.45514 * 180.02562 * 5 4 3 30 30 H 0.96998 * 119.99836 * 355.55192 * 9 7 6 31 31 H 1.09004 * 109.46763 * 299.99947 * 10 9 7 32 32 H 1.08998 * 109.46991 * 59.99876 * 10 9 7 33 33 H 0.96694 * 114.00430 * 309.67173 * 12 11 10 34 34 H 1.09004 * 113.76928 * 336.34782 * 13 11 10 35 35 H 1.08996 * 113.77001 * 107.75036 * 13 11 10 36 36 H 0.96999 * 119.99922 * 180.02562 * 18 17 15 37 37 H 1.09001 * 113.77043 * 221.06025 * 23 14 13 38 38 H 1.08997 * 113.87342 * 89.67181 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1010 0.0000 4 6 3.5521 0.7093 -0.0059 5 6 3.5779 -0.6888 -0.0033 6 6 2.2677 -1.1181 0.0041 7 6 1.8124 -2.5124 0.0087 8 8 0.6227 -2.7638 0.0600 9 7 2.7111 -3.5151 -0.0498 10 6 2.2640 -4.9064 0.0528 11 6 3.4733 -5.8390 -0.0414 12 8 4.5002 -5.5163 0.8984 13 6 3.9869 -6.0445 -1.4781 14 7 4.1333 -7.4675 -1.1150 15 6 4.9120 -8.4984 -1.5687 16 1 4.8263 -9.4774 -1.1209 17 6 5.8117 -8.2850 -2.6041 18 7 5.9157 -7.0920 -3.1502 19 14 6.8735 -9.6916 -3.2235 20 1 6.0031 -10.7856 -3.7242 21 1 7.7426 -9.2074 -4.3259 22 1 7.7184 -10.2000 -2.1132 23 6 3.1033 -7.3331 -0.0667 24 1 -0.3634 -0.0701 1.0252 25 1 -0.3633 0.9230 -0.4520 26 1 -0.3634 -0.8528 -0.5734 27 1 1.9081 2.1236 -0.0004 28 1 4.4132 1.3611 -0.0118 29 1 4.4583 -1.3144 -0.0062 30 1 3.6539 -3.3155 -0.1599 31 1 1.7628 -5.0574 1.0090 32 1 1.5710 -5.1262 -0.7593 33 1 4.7561 -4.5839 0.8967 34 1 3.2335 -5.8618 -2.2443 35 1 4.9332 -5.5436 -1.6822 36 1 6.5441 -6.9430 -3.8740 37 1 3.3440 -7.8610 0.8560 38 1 2.0897 -7.5288 -0.4166 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278837445.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:21 Heat of formation + Delta-G solvation = 3.827226 kcal Electronic energy + Delta-G solvation = -21602.919281 eV Core-core repulsion = 18254.615078 eV Total energy + Delta-G solvation = -3348.304203 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.29927 -40.89193 -39.67833 -36.52036 -35.41876 -34.04167 -33.63577 -31.09452 -29.67872 -27.54614 -27.35013 -26.73318 -24.21316 -23.07992 -21.38930 -21.12418 -20.65142 -19.20406 -18.69955 -17.52086 -17.21871 -16.97569 -16.72081 -16.13585 -15.87336 -15.65367 -15.42303 -15.02352 -14.54017 -14.44895 -14.30545 -14.09044 -13.88686 -13.42684 -13.23386 -13.15902 -12.96437 -12.86442 -12.80056 -12.54396 -12.26391 -11.77444 -11.44689 -11.07311 -10.95651 -10.72683 -10.24293 -9.66136 -9.15668 -8.93578 -7.90627 -5.23634 0.47712 1.45693 1.49393 1.55267 1.66192 1.85070 2.35840 2.37104 2.47225 3.04862 3.28532 3.34203 3.57119 3.78552 3.88614 4.00574 4.21979 4.36297 4.39944 4.50802 4.58012 4.67728 4.72645 4.75147 4.78087 4.95075 5.16921 5.19369 5.25486 5.29925 5.32897 5.49278 5.82450 5.92332 6.02319 6.34578 6.42586 6.81698 6.91468 7.09926 7.59513 8.52871 9.25903 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.029940 B = 0.003673 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.989838 B = 7620.986517 C = 8069.501763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.421 5.421 3 C 0.025 3.975 4 C -0.223 4.223 5 C -0.139 4.139 6 C -0.091 4.091 7 C 0.587 3.413 8 O -0.585 6.585 9 N -0.706 5.706 10 C 0.122 3.878 11 C 0.098 3.902 12 O -0.539 6.539 13 C 0.143 3.857 14 N -0.635 5.635 15 C -0.238 4.238 16 H 0.083 0.917 17 C -0.065 4.065 18 N -0.952 5.952 19 Si 0.980 3.020 20 H -0.278 1.278 21 H -0.292 1.292 22 H -0.277 1.277 23 C 0.130 3.870 24 H 0.078 0.922 25 H 0.116 0.884 26 H 0.075 0.925 27 H 0.206 0.794 28 H 0.164 0.836 29 H 0.157 0.843 30 H 0.410 0.590 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.383 0.617 34 H 0.025 0.975 35 H 0.050 0.950 36 H 0.249 0.751 37 H 0.059 0.941 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.136 18.351 7.652 21.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.094 5.094 3 C -0.110 4.110 4 C -0.246 4.246 5 C -0.166 4.166 6 C -0.204 4.204 7 C 0.377 3.623 8 O -0.467 6.467 9 N -0.358 5.358 10 C -0.003 4.003 11 C 0.056 3.944 12 O -0.345 6.345 13 C 0.017 3.983 14 N -0.361 5.361 15 C -0.366 4.366 16 H 0.100 0.900 17 C -0.258 4.258 18 N -0.601 5.601 19 Si 0.808 3.192 20 H -0.204 1.204 21 H -0.218 1.218 22 H -0.203 1.203 23 C 0.005 3.995 24 H 0.097 0.903 25 H 0.135 0.865 26 H 0.094 0.906 27 H 0.223 0.777 28 H 0.182 0.818 29 H 0.174 0.826 30 H 0.247 0.753 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.232 0.768 34 H 0.043 0.957 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.077 0.923 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.186 17.301 7.648 21.029 hybrid contribution 1.035 -0.276 -0.875 1.384 sum -8.150 17.026 6.773 20.054 Atomic orbital electron populations 1.22308 0.75298 1.05447 1.04243 1.44114 1.07583 1.05013 1.52698 1.22722 0.90460 0.92461 1.05395 1.21208 0.97255 0.94671 1.11456 1.21742 0.94320 0.96767 1.03734 1.19979 0.91585 0.87199 1.21595 1.17248 0.85149 0.84362 0.75520 1.90751 1.17234 1.85585 1.53151 1.45440 1.11053 1.05360 1.73938 1.21768 0.96218 0.79277 1.03033 1.23144 0.86720 0.94789 0.89790 1.86564 1.56688 1.32027 1.59269 1.22842 0.97846 0.85056 0.92558 1.46021 1.41909 1.08110 1.40082 1.19361 1.13511 0.90092 1.13607 0.89970 1.25606 1.01450 0.99585 0.99146 1.69973 1.39884 1.22178 1.28037 0.85133 0.78301 0.78304 0.77467 1.20359 1.21824 1.20305 1.22790 0.93185 0.91101 0.92438 0.90295 0.86544 0.90621 0.77720 0.81828 0.82554 0.75316 0.89886 0.90720 0.76809 0.95712 0.93178 0.94219 0.92281 0.90951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.12 10.43 127.77 1.33 2.45 16 2 N -0.42 -8.71 3.16 -534.31 -1.69 -10.39 16 3 C 0.03 0.39 11.37 83.48 0.95 1.34 16 4 C -0.22 -3.83 10.81 22.01 0.24 -3.59 16 5 C -0.14 -2.92 10.35 22.57 0.23 -2.69 16 6 C -0.09 -2.28 6.89 40.35 0.28 -2.00 16 7 C 0.59 17.20 7.78 86.45 0.67 17.87 16 8 O -0.58 -20.15 14.80 -4.34 -0.06 -20.22 16 9 N -0.71 -18.99 5.32 -467.07 -2.48 -21.47 16 10 C 0.12 3.66 5.28 86.38 0.46 4.12 16 11 C 0.10 3.56 1.52 -10.13 -0.02 3.55 16 12 O -0.54 -19.13 13.51 -148.98 -2.01 -21.14 16 13 C 0.14 6.67 6.92 86.48 0.60 7.27 16 14 N -0.63 -33.20 3.70 -720.29 -2.66 -35.87 16 15 C -0.24 -13.68 10.70 84.04 0.90 -12.78 16 16 H 0.08 4.53 7.83 -2.91 -0.02 4.51 16 17 C -0.06 -3.75 5.50 84.86 0.47 -3.28 16 18 N -0.95 -57.64 11.38 21.65 0.25 -57.39 16 19 Si 0.98 46.34 29.55 68.60 2.03 48.37 16 20 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 21 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 22 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 23 C 0.13 5.31 8.34 86.48 0.72 6.03 16 24 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.12 1.03 8.13 -2.38 -0.02 1.02 16 26 H 0.08 1.64 6.62 -2.39 -0.02 1.63 16 27 H 0.21 1.41 8.06 -2.91 -0.02 1.39 16 28 H 0.16 2.02 8.06 -2.91 -0.02 1.99 16 29 H 0.16 2.74 7.46 -2.91 -0.02 2.71 16 30 H 0.41 9.51 6.22 -92.71 -0.58 8.93 16 31 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.07 2.38 8.05 -2.39 -0.02 2.36 16 33 H 0.38 9.98 7.61 -74.06 -0.56 9.42 16 34 H 0.03 1.20 8.03 -2.39 -0.02 1.18 16 35 H 0.05 2.61 7.15 -2.39 -0.02 2.59 16 36 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 37 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.07 2.65 8.10 -2.39 -0.02 2.63 16 Total: -1.00 -76.82 322.68 0.14 -76.67 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: -0.05 Total: 23.15 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: 6.83 Total: 18.28 kcal Atomic # 7 Polarization: -118.53 SS G_CDS: -6.59 Total: -125.12 kcal Atomic # 8 Polarization: -39.28 SS G_CDS: -2.08 Total: -41.35 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -76.82 0.14 -76.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278837445.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.500 kcal (2) G-P(sol) polarization free energy of solvation -76.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds