Wall clock time and date at job start Tue Mar 31 2020 00:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.46813 * 2 1 4 4 C 1.36943 * 119.99953 * 275.30898 * 3 2 1 5 5 H 1.07999 * 119.99947 * 37.58062 * 4 3 2 6 6 C 1.38811 * 120.00070 * 217.57290 * 4 3 2 7 7 N 1.31617 * 119.99632 * 21.44003 * 6 4 3 8 8 Si 1.86797 * 120.00169 * 201.43460 * 6 4 3 9 9 H 1.48503 * 109.47086 * 0.02562 * 8 6 4 10 10 H 1.48490 * 109.47411 * 120.00346 * 8 6 4 11 11 H 1.48506 * 109.47401 * 240.00750 * 8 6 4 12 12 C 1.46498 * 120.00151 * 95.31238 * 3 2 1 13 13 C 1.53002 * 109.47383 * 269.99768 * 12 3 2 14 14 N 1.46494 * 109.47439 * 179.97438 * 13 12 3 15 15 C 1.34779 * 120.00320 * 179.97438 * 14 13 12 16 16 O 1.21519 * 119.99576 * 0.02562 * 15 14 13 17 17 C 1.48149 * 120.00177 * 180.02562 * 15 14 13 18 18 C 1.39162 * 119.68979 * 180.02562 * 17 15 14 19 19 C 1.38742 * 119.18999 * 180.02562 * 18 17 15 20 20 C 1.38375 * 118.55275 * 359.72785 * 19 18 17 21 21 C 1.39238 * 119.30689 * 0.51098 * 20 19 18 22 22 O 1.35675 * 119.61662 * 179.75026 * 21 20 19 23 23 N 1.31926 * 120.76958 * 359.47833 * 21 20 19 24 24 H 1.09001 * 109.46740 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46992 * 299.99547 * 1 2 3 26 26 H 1.08996 * 109.47492 * 59.99877 * 1 2 3 27 27 H 1.08997 * 109.47001 * 240.00350 * 2 1 3 28 28 H 1.09001 * 109.47228 * 119.99724 * 2 1 3 29 29 H 0.97010 * 119.99777 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.47419 * 150.00083 * 12 3 2 31 31 H 1.08998 * 109.47120 * 30.00173 * 12 3 2 32 32 H 1.08998 * 109.46585 * 59.99805 * 13 12 3 33 33 H 1.09001 * 109.46867 * 300.00510 * 13 12 3 34 34 H 0.96998 * 119.99818 * 0.02562 * 14 13 12 35 35 H 1.08003 * 120.40585 * 359.97438 * 18 17 15 36 36 H 1.08001 * 120.72466 * 180.02562 * 19 18 17 37 37 H 1.08001 * 120.34300 * 180.28747 * 20 19 18 38 38 H 0.96702 * 113.99694 * 269.73134 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.1430 2.0634 -1.1809 5 1 1.4104 1.9278 -1.9628 6 6 3.2109 2.9291 -1.3729 7 7 4.3024 2.7982 -0.6492 8 14 3.0989 4.2798 -2.6584 9 1 1.7767 4.2143 -3.3313 10 1 3.2545 5.6024 -2.0016 11 1 4.1762 4.0967 -3.6640 12 6 2.3731 2.0327 1.2632 13 6 1.1425 2.7383 1.8366 14 7 1.4972 3.3893 3.1001 15 6 0.5649 4.0767 3.7891 16 8 -0.5701 4.1561 3.3624 17 6 0.9238 4.7355 5.0666 18 6 -0.0442 5.4432 5.7729 19 6 0.3034 6.0565 6.9679 20 6 1.6062 5.9363 7.4185 21 6 2.5263 5.2176 6.6598 22 8 3.8065 5.1001 7.0932 23 7 2.1663 4.6452 5.5270 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 5.0489 3.4030 -0.7836 30 1 3.1615 2.7642 1.0859 31 1 2.7255 1.2834 1.9720 32 1 0.3541 2.0068 2.0139 33 1 0.7902 3.4876 1.1277 34 1 2.4033 3.3262 3.4405 35 1 -1.0534 5.5147 5.3951 36 1 -0.4281 6.6116 7.5364 37 1 1.9070 6.3982 8.3473 38 1 4.3941 5.8008 6.7787 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317475063.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:12 Heat of formation + Delta-G solvation = -19.197475 kcal Electronic energy + Delta-G solvation = -21319.921646 eV Core-core repulsion = 17970.619018 eV Total energy + Delta-G solvation = -3349.302629 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.82740 -39.01655 -37.12466 -36.26784 -34.19264 -32.82705 -31.87024 -30.68506 -29.54778 -27.59129 -24.98371 -24.01076 -23.42872 -21.83083 -20.57602 -20.23593 -18.91232 -17.82536 -16.66261 -16.56758 -16.14861 -15.56948 -15.22252 -15.07829 -14.78555 -13.99221 -13.87997 -13.68636 -13.37327 -13.16799 -12.60604 -12.38632 -12.36867 -12.03021 -11.98962 -11.50315 -11.11677 -10.77465 -10.63210 -10.48554 -10.34460 -10.24487 -10.05881 -9.84661 -9.77340 -9.45902 -9.21486 -8.56462 -8.43638 -6.61248 -5.81996 -3.41011 0.43965 0.87871 2.73624 3.19793 3.34734 3.43904 3.47353 3.50638 3.75320 4.32062 4.47266 4.67949 4.72165 4.78671 5.20721 5.23879 5.30278 5.56534 5.67496 5.81472 6.01029 6.11551 6.16875 6.18213 6.40304 6.42690 6.53103 6.70569 6.84693 6.93347 7.02441 7.18278 7.18828 7.48021 7.58421 7.82037 7.94871 8.47264 8.51008 9.15885 9.77989 10.36155 11.18028 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.017963 B = 0.004260 C = 0.003943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.366514 B = 6570.786755 C = 7098.621569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.141 3.859 3 N -0.580 5.580 4 C -0.261 4.261 5 H 0.062 0.938 6 C 0.014 3.986 7 N -0.886 5.886 8 Si 0.896 3.104 9 H -0.275 1.275 10 H -0.288 1.288 11 H -0.289 1.289 12 C 0.137 3.863 13 C 0.094 3.906 14 N -0.694 5.694 15 C 0.560 3.440 16 O -0.539 6.539 17 C 0.114 3.886 18 C -0.125 4.125 19 C -0.067 4.067 20 C -0.170 4.170 21 C 0.310 3.690 22 O -0.480 6.480 23 N -0.477 5.477 24 H 0.036 0.964 25 H 0.044 0.956 26 H 0.050 0.950 27 H 0.046 0.954 28 H 0.035 0.965 29 H 0.255 0.745 30 H 0.099 0.901 31 H 0.030 0.970 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.409 0.591 35 H 0.153 0.847 36 H 0.147 0.853 37 H 0.144 0.856 38 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.934 6.287 16.105 17.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.300 5.300 4 C -0.391 4.391 5 H 0.080 0.920 6 C -0.187 4.187 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.199 1.199 10 H -0.214 1.214 11 H -0.216 1.216 12 C 0.010 3.990 13 C -0.031 4.031 14 N -0.344 5.344 15 C 0.343 3.657 16 O -0.417 6.417 17 C -0.025 4.025 18 C -0.146 4.146 19 C -0.092 4.092 20 C -0.191 4.191 21 C 0.128 3.872 22 O -0.287 6.287 23 N -0.198 5.198 24 H 0.055 0.945 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.117 0.883 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.244 0.756 35 H 0.171 0.829 36 H 0.164 0.836 37 H 0.162 0.838 38 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -4.110 5.405 15.540 16.958 hybrid contribution 0.104 1.636 -0.103 1.642 sum -4.005 7.041 15.437 17.433 Atomic orbital electron populations 1.22391 0.99920 0.99081 1.01390 1.20883 0.91764 0.86974 0.98921 1.43624 1.76051 1.08296 1.02068 1.19065 1.04795 1.21268 0.93968 0.92005 1.25189 0.94164 1.01218 0.98099 1.70009 1.03175 1.37227 1.42426 0.86344 0.77779 0.82192 0.81201 1.19946 1.21427 1.21573 1.21056 0.94469 0.97066 0.86438 1.22575 1.01371 0.96660 0.82446 1.46042 1.13633 1.50986 1.23735 1.17865 0.85399 0.79481 0.82997 1.90776 1.20111 1.61795 1.68984 1.21146 0.88400 0.97205 0.95764 1.22180 1.01491 0.96307 0.94662 1.21540 0.95838 0.96819 0.95046 1.22297 0.94498 1.00184 1.02138 1.19109 0.86446 0.92733 0.88890 1.84801 1.17233 1.54781 1.71921 1.67061 1.19388 1.19284 1.14110 0.94453 0.93674 0.93092 0.93561 0.94704 0.93549 0.88319 0.95142 0.92666 0.91424 0.75598 0.82931 0.83573 0.83779 0.73952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.16 10.21 37.16 0.38 -2.78 16 2 C 0.14 2.99 6.44 -4.04 -0.03 2.97 16 3 N -0.58 -14.30 2.43 -173.24 -0.42 -14.73 16 4 C -0.26 -7.08 9.45 -15.06 -0.14 -7.22 16 5 H 0.06 1.69 7.92 -52.49 -0.42 1.27 16 6 C 0.01 0.37 4.95 -17.43 -0.09 0.29 16 7 N -0.89 -25.04 11.47 55.49 0.64 -24.40 16 8 Si 0.90 21.51 29.60 -169.99 -5.03 16.48 16 9 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 C 0.14 3.15 5.45 -4.04 -0.02 3.12 16 13 C 0.09 1.98 6.00 -4.04 -0.02 1.96 16 14 N -0.69 -12.82 5.54 -61.15 -0.34 -13.16 16 15 C 0.56 10.10 7.81 -12.19 -0.10 10.00 16 16 O -0.54 -11.05 16.32 5.35 0.09 -10.96 16 17 C 0.11 1.68 6.75 -83.03 -0.56 1.12 16 18 C -0.13 -1.47 9.63 -39.05 -0.38 -1.84 16 19 C -0.07 -0.57 10.16 -39.34 -0.40 -0.97 16 20 C -0.17 -1.48 10.05 -39.16 -0.39 -1.87 16 21 C 0.31 3.56 7.74 -17.14 -0.13 3.43 16 22 O -0.48 -4.75 13.56 -18.73 -0.25 -5.01 16 23 N -0.48 -6.82 9.57 -9.88 -0.09 -6.92 16 24 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.04 0.85 6.64 -51.93 -0.34 0.51 16 26 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 28 H 0.03 0.69 7.83 -51.93 -0.41 0.28 16 29 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 30 H 0.10 2.54 5.52 -51.93 -0.29 2.26 16 31 H 0.03 0.66 7.86 -51.93 -0.41 0.25 16 32 H 0.06 1.16 6.64 -51.93 -0.34 0.82 16 33 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 34 H 0.41 7.09 7.80 -40.82 -0.32 6.77 16 35 H 0.15 1.69 7.63 -52.48 -0.40 1.29 16 36 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 37 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 38 H 0.40 2.02 9.06 45.56 0.41 2.43 16 LS Contribution 328.28 15.07 4.95 4.95 Total: -1.00 -32.58 328.28 -6.53 -39.11 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -4.18 Total: 6.43 kcal Atomic # 6 Polarization: 10.08 SS G_CDS: -1.88 Total: 8.20 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: -0.22 Total: -59.20 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -0.17 Total: -15.97 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.58 -6.53 -39.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317475063.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.908 kcal (2) G-P(sol) polarization free energy of solvation -32.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds