Wall clock time and date at job start Tue Mar 31 2020 00:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.46813 * 2 1 4 4 C 1.36943 * 119.99953 * 275.30898 * 3 2 1 5 5 H 1.07999 * 119.99947 * 37.58062 * 4 3 2 6 6 C 1.38811 * 120.00070 * 217.57290 * 4 3 2 7 7 N 1.31617 * 119.99632 * 21.44003 * 6 4 3 8 8 Si 1.86797 * 120.00169 * 201.43460 * 6 4 3 9 9 H 1.48503 * 109.47086 * 0.02562 * 8 6 4 10 10 H 1.48490 * 109.47411 * 120.00346 * 8 6 4 11 11 H 1.48506 * 109.47401 * 240.00750 * 8 6 4 12 12 C 1.46498 * 120.00151 * 95.31238 * 3 2 1 13 13 C 1.53002 * 109.47383 * 269.99768 * 12 3 2 14 14 N 1.46494 * 109.47439 * 179.97438 * 13 12 3 15 15 C 1.34779 * 120.00320 * 179.97438 * 14 13 12 16 16 O 1.21519 * 119.99576 * 0.02562 * 15 14 13 17 17 C 1.48149 * 120.00177 * 180.02562 * 15 14 13 18 18 C 1.39162 * 119.68979 * 180.02562 * 17 15 14 19 19 C 1.38742 * 119.18999 * 180.02562 * 18 17 15 20 20 C 1.38375 * 118.55275 * 359.72785 * 19 18 17 21 21 C 1.39238 * 119.30689 * 0.51098 * 20 19 18 22 22 O 1.35675 * 119.61662 * 179.75026 * 21 20 19 23 23 N 1.31926 * 120.76958 * 359.47833 * 21 20 19 24 24 H 1.09001 * 109.46740 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46992 * 299.99547 * 1 2 3 26 26 H 1.08996 * 109.47492 * 59.99877 * 1 2 3 27 27 H 1.08997 * 109.47001 * 240.00350 * 2 1 3 28 28 H 1.09001 * 109.47228 * 119.99724 * 2 1 3 29 29 H 0.97010 * 119.99777 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.47419 * 150.00083 * 12 3 2 31 31 H 1.08998 * 109.47120 * 30.00173 * 12 3 2 32 32 H 1.08998 * 109.46585 * 59.99805 * 13 12 3 33 33 H 1.09001 * 109.46867 * 300.00510 * 13 12 3 34 34 H 0.96998 * 119.99818 * 0.02562 * 14 13 12 35 35 H 1.08003 * 120.40585 * 359.97438 * 18 17 15 36 36 H 1.08001 * 120.72466 * 180.02562 * 19 18 17 37 37 H 1.08001 * 120.34300 * 180.28747 * 20 19 18 38 38 H 0.96702 * 113.99694 * 269.73134 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.1430 2.0634 -1.1809 5 1 1.4104 1.9278 -1.9628 6 6 3.2109 2.9291 -1.3729 7 7 4.3024 2.7982 -0.6492 8 14 3.0989 4.2798 -2.6584 9 1 1.7767 4.2143 -3.3313 10 1 3.2545 5.6024 -2.0016 11 1 4.1762 4.0967 -3.6640 12 6 2.3731 2.0327 1.2632 13 6 1.1425 2.7383 1.8366 14 7 1.4972 3.3893 3.1001 15 6 0.5649 4.0767 3.7891 16 8 -0.5701 4.1561 3.3624 17 6 0.9238 4.7355 5.0666 18 6 -0.0442 5.4432 5.7729 19 6 0.3034 6.0565 6.9679 20 6 1.6062 5.9363 7.4185 21 6 2.5263 5.2176 6.6598 22 8 3.8065 5.1001 7.0932 23 7 2.1663 4.6452 5.5270 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 5.0489 3.4030 -0.7836 30 1 3.1615 2.7642 1.0859 31 1 2.7255 1.2834 1.9720 32 1 0.3541 2.0068 2.0139 33 1 0.7902 3.4876 1.1277 34 1 2.4033 3.3262 3.4405 35 1 -1.0534 5.5147 5.3951 36 1 -0.4281 6.6116 7.5364 37 1 1.9070 6.3982 8.3473 38 1 4.3941 5.8008 6.7787 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317475063.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:12 Heat of formation + Delta-G solvation = -45.364282 kcal Electronic energy + Delta-G solvation = -21321.056324 eV Core-core repulsion = 17970.619018 eV Total energy + Delta-G solvation = -3350.437306 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.79894 -40.31652 -38.20712 -37.84358 -35.76705 -33.86485 -33.70871 -31.73392 -31.12563 -29.34101 -26.49848 -25.49359 -24.29663 -23.38384 -22.18117 -21.81693 -19.88838 -19.06219 -18.38710 -17.56427 -17.13822 -16.96549 -16.67395 -16.54695 -16.23558 -15.69760 -15.45189 -15.08335 -14.64318 -14.27959 -14.13417 -13.97996 -13.71438 -13.24386 -13.18121 -13.04324 -12.78617 -12.65821 -12.39241 -12.31505 -12.04898 -11.71188 -11.67970 -11.43974 -11.04694 -10.57519 -10.53104 -10.22329 -9.95962 -8.62319 -7.87274 -5.50808 -0.47617 0.09533 1.41931 1.46336 1.56125 1.60109 2.00672 2.45569 2.50958 2.73396 3.20345 3.39021 3.73289 3.85680 3.91627 4.03191 4.27555 4.34505 4.41415 4.45551 4.52096 4.69364 4.80587 4.83584 4.95657 5.04836 5.07384 5.16833 5.28009 5.32458 5.43472 5.55816 5.63279 5.71682 6.32396 6.44184 6.57550 6.76781 7.06134 7.13664 7.80314 8.33415 9.09131 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.017963 B = 0.004260 C = 0.003943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.366514 B = 6570.786755 C = 7098.621569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.136 3.864 3 N -0.597 5.597 4 C -0.271 4.271 5 H 0.055 0.945 6 C -0.030 4.030 7 N -0.913 5.913 8 Si 0.953 3.047 9 H -0.270 1.270 10 H -0.290 1.290 11 H -0.286 1.286 12 C 0.146 3.854 13 C 0.117 3.883 14 N -0.696 5.696 15 C 0.558 3.442 16 O -0.572 6.572 17 C 0.082 3.918 18 C -0.126 4.126 19 C -0.051 4.051 20 C -0.147 4.147 21 C 0.297 3.703 22 O -0.489 6.489 23 N -0.508 5.508 24 H 0.070 0.930 25 H 0.040 0.960 26 H 0.036 0.964 27 H 0.039 0.961 28 H 0.049 0.951 29 H 0.254 0.746 30 H 0.072 0.928 31 H 0.041 0.959 32 H 0.055 0.945 33 H 0.037 0.963 34 H 0.413 0.587 35 H 0.154 0.846 36 H 0.192 0.808 37 H 0.184 0.816 38 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.540 7.363 18.338 20.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.010 3.990 3 N -0.319 5.319 4 C -0.402 4.402 5 H 0.073 0.927 6 C -0.228 4.228 7 N -0.556 5.556 8 Si 0.781 3.219 9 H -0.195 1.195 10 H -0.217 1.217 11 H -0.212 1.212 12 C 0.018 3.982 13 C -0.009 4.009 14 N -0.346 5.346 15 C 0.344 3.656 16 O -0.451 6.451 17 C -0.055 4.055 18 C -0.147 4.147 19 C -0.077 4.077 20 C -0.168 4.168 21 C 0.115 3.885 22 O -0.299 6.299 23 N -0.231 5.231 24 H 0.089 0.911 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.250 0.750 35 H 0.172 0.828 36 H 0.209 0.791 37 H 0.202 0.798 38 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -4.711 6.479 17.782 19.503 hybrid contribution 0.332 1.305 -0.663 1.501 sum -4.378 7.784 17.119 19.308 Atomic orbital electron populations 1.22213 0.97786 1.00938 1.00464 1.21026 0.93338 0.85338 0.99251 1.43861 1.76418 1.09694 1.01881 1.19232 1.04460 1.21794 0.94676 0.92717 1.25807 0.93941 1.02924 1.00081 1.70108 1.03653 1.37933 1.43910 0.85454 0.77806 0.79518 0.79161 1.19469 1.21700 1.21214 1.20883 0.94334 0.96681 0.86274 1.22050 1.00172 0.95618 0.83012 1.45920 1.14195 1.51442 1.23031 1.18430 0.84628 0.78627 0.83953 1.90735 1.21256 1.62914 1.70235 1.20635 0.89845 0.99837 0.95210 1.22339 1.00856 0.95869 0.95634 1.22022 0.96649 0.95459 0.93525 1.22721 0.93677 0.97934 1.02445 1.19477 0.87519 0.92986 0.88529 1.84766 1.17205 1.56168 1.71775 1.66869 1.19419 1.20813 1.16001 0.91149 0.94062 0.94477 0.94302 0.93232 0.93718 0.91024 0.94080 0.92696 0.94407 0.75032 0.82830 0.79067 0.79849 0.71739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.68 10.21 71.98 0.73 -4.94 16 2 C 0.14 5.74 6.44 86.38 0.56 6.30 16 3 N -0.60 -30.00 2.43 -702.01 -1.71 -31.71 16 4 C -0.27 -15.00 9.45 84.03 0.79 -14.21 16 5 H 0.06 3.05 7.92 -2.91 -0.02 3.02 16 6 C -0.03 -1.64 4.95 84.86 0.42 -1.22 16 7 N -0.91 -52.67 11.47 21.65 0.25 -52.42 16 8 Si 0.95 44.97 29.60 68.60 2.03 47.01 16 9 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 10 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 11 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 12 C 0.15 6.86 5.45 86.38 0.47 7.33 16 13 C 0.12 5.11 6.00 86.38 0.52 5.63 16 14 N -0.70 -26.69 5.54 -465.68 -2.58 -29.27 16 15 C 0.56 20.78 7.81 86.88 0.68 21.46 16 16 O -0.57 -24.19 16.32 -3.78 -0.06 -24.25 16 17 C 0.08 2.41 6.75 41.85 0.28 2.69 16 18 C -0.13 -2.74 9.63 22.61 0.22 -2.52 16 19 C -0.05 -0.66 10.16 22.42 0.23 -0.44 16 20 C -0.15 -1.94 10.05 22.54 0.23 -1.71 16 21 C 0.30 6.20 7.74 84.92 0.66 6.86 16 22 O -0.49 -8.69 13.56 -89.92 -1.22 -9.91 16 23 N -0.51 -14.33 9.57 -298.20 -2.85 -17.19 16 24 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 25 H 0.04 1.53 6.64 -2.38 -0.02 1.51 16 26 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.04 1.68 8.08 -2.39 -0.02 1.66 16 28 H 0.05 1.93 7.83 -2.39 -0.02 1.91 16 29 H 0.25 14.07 8.31 -92.70 -0.77 13.30 16 30 H 0.07 3.83 5.52 -2.39 -0.01 3.82 16 31 H 0.04 1.81 7.86 -2.39 -0.02 1.79 16 32 H 0.05 2.37 6.64 -2.39 -0.02 2.36 16 33 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.41 14.95 7.80 -92.71 -0.72 14.22 16 35 H 0.15 3.24 7.63 -2.91 -0.02 3.22 16 36 H 0.19 0.77 8.06 -2.91 -0.02 0.74 16 37 H 0.18 1.01 8.06 -2.91 -0.02 0.99 16 38 H 0.42 3.40 9.06 -74.06 -0.67 2.73 16 Total: -1.00 -72.53 328.28 -0.66 -73.19 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: -0.30 Total: 19.33 kcal Atomic # 6 Polarization: 19.44 SS G_CDS: 5.78 Total: 25.23 kcal Atomic # 7 Polarization: -123.70 SS G_CDS: -6.90 Total: -130.59 kcal Atomic # 8 Polarization: -32.88 SS G_CDS: -1.28 Total: -34.16 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.01 kcal Total: -72.53 -0.66 -73.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317475063.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.825 kcal (2) G-P(sol) polarization free energy of solvation -72.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds