Wall clock time and date at job start Tue Mar 31 2020 00:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46497 * 109.47089 * 2 1 4 4 C 1.37096 * 120.00034 * 263.03303 * 3 2 1 5 5 H 1.07999 * 120.00069 * 142.21846 * 4 3 2 6 6 C 1.38949 * 120.00101 * 322.21836 * 4 3 2 7 7 N 1.31415 * 120.00462 * 157.07773 * 6 4 3 8 8 Si 1.86801 * 120.00035 * 337.08430 * 6 4 3 9 9 H 1.48503 * 109.47264 * 95.19786 * 8 6 4 10 10 H 1.48503 * 109.47417 * 215.20186 * 8 6 4 11 11 H 1.48504 * 109.47202 * 335.20261 * 8 6 4 12 12 C 1.34776 * 120.00088 * 83.03636 * 3 2 1 13 13 O 1.21285 * 120.00175 * 180.02562 * 12 3 2 14 14 C 1.50700 * 119.99689 * 359.97438 * 12 3 2 15 15 C 1.50703 * 109.46947 * 180.02562 * 14 12 3 16 16 C 1.38231 * 120.82194 * 90.00510 * 15 14 12 17 17 C 1.50695 * 120.41490 * 359.70178 * 16 15 14 18 18 N 1.32494 * 119.17662 * 179.97438 * 16 15 14 19 19 C 1.31785 * 120.96447 * 359.97438 * 18 16 15 20 20 C 1.50695 * 119.09723 * 180.02562 * 19 18 16 21 21 N 1.31769 * 121.81385 * 0.02562 * 19 18 16 22 22 C 1.32826 * 120.71576 * 359.97438 * 21 19 18 23 23 O 1.35518 * 120.51083 * 180.02562 * 22 21 19 24 24 H 1.08998 * 109.46935 * 60.00378 * 1 2 3 25 25 H 1.08994 * 109.46912 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47121 * 300.00183 * 1 2 3 27 27 H 1.08997 * 109.47121 * 239.99817 * 2 1 3 28 28 H 1.08996 * 109.46970 * 120.00402 * 2 1 3 29 29 H 0.96994 * 120.00220 * 179.97438 * 7 6 4 30 30 H 1.09003 * 109.46848 * 60.00926 * 14 12 3 31 31 H 1.08999 * 109.47937 * 300.00148 * 14 12 3 32 32 H 1.08998 * 109.47609 * 89.99790 * 17 16 15 33 33 H 1.09000 * 109.47506 * 210.00298 * 17 16 15 34 34 H 1.09005 * 109.46971 * 330.00305 * 17 16 15 35 35 H 1.09005 * 109.47445 * 270.00739 * 20 19 18 36 36 H 1.09000 * 109.46888 * 30.00220 * 20 19 18 37 37 H 1.08996 * 109.47717 * 150.00554 * 20 19 18 38 38 H 0.96701 * 113.99983 * 269.98037 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3827 1.9795 -1.1785 5 1 2.1610 3.0232 -1.3453 6 6 3.0370 1.2430 -2.1583 7 7 2.9924 1.6323 -3.4127 8 14 3.9801 -0.3008 -1.6927 9 1 3.1111 -1.4892 -1.8866 10 1 5.1850 -0.4230 -2.5522 11 1 4.3941 -0.2174 -0.2690 12 6 2.1096 2.0637 1.1586 13 8 2.5134 3.2074 1.1585 14 6 1.7087 1.4062 2.4539 15 6 1.9037 2.3760 3.5909 16 6 0.8845 3.2244 3.9809 17 6 -0.4434 3.1994 3.2688 18 7 1.0913 4.0637 4.9850 19 6 2.2498 4.0981 5.6122 20 6 2.4389 5.0690 6.7492 21 7 3.2473 3.3070 5.2727 22 6 3.1158 2.4389 4.2760 23 8 4.1443 1.6269 3.9306 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5139 0.8899 29 1 3.4495 1.1184 -4.0966 30 1 2.3259 0.5231 2.6193 31 1 0.6602 1.1125 2.4032 32 1 -1.1036 2.4820 3.7560 33 1 -0.8942 4.1912 3.3055 34 1 -0.2929 2.9070 2.2295 35 1 2.8219 6.0129 6.3611 36 1 1.4826 5.2406 7.2433 37 1 3.1490 4.6559 7.4655 38 1 4.7329 2.0009 3.2607 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318057501.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:42 Heat of formation + Delta-G solvation = -21.645656 kcal Electronic energy + Delta-G solvation = -22478.054072 eV Core-core repulsion = 19128.645282 eV Total energy + Delta-G solvation = -3349.408790 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.22035 -38.90969 -37.52504 -35.45221 -34.63426 -32.68023 -32.29289 -30.32010 -29.79896 -28.93166 -26.64302 -24.41239 -23.03748 -22.83763 -21.65548 -18.98138 -18.58080 -17.84167 -17.02296 -16.40579 -15.80607 -15.56235 -14.85417 -14.50314 -14.36134 -13.90020 -13.52103 -13.40047 -13.18789 -13.15143 -12.80350 -12.57356 -12.43891 -12.41675 -12.24167 -12.05221 -11.77220 -11.57116 -11.37885 -11.12637 -10.75994 -10.48051 -10.19030 -10.12418 -9.94086 -9.19345 -9.13812 -9.00609 -8.51479 -7.85045 -6.47629 -4.04367 0.99068 1.14020 2.96894 3.16253 3.20375 3.40664 3.59926 3.81925 4.02174 4.07556 4.32164 4.48190 4.85851 4.93850 4.98675 5.20173 5.30864 5.40942 5.48851 5.50375 5.55916 5.61017 5.65656 5.74907 5.81963 5.83752 5.93358 6.05928 6.09445 6.18902 6.33547 6.48233 6.65834 7.10306 7.46435 7.50876 8.20216 8.22540 8.41620 8.87598 9.23422 9.66839 10.64203 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.025349 B = 0.005458 C = 0.005118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.294398 B = 5129.308758 C = 5470.091356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.083 3.917 3 N -0.461 5.461 4 C -0.317 4.317 5 H 0.104 0.896 6 C 0.063 3.937 7 N -0.860 5.860 8 Si 0.872 3.128 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.263 1.263 12 C 0.466 3.534 13 O -0.564 6.564 14 C -0.096 4.096 15 C -0.170 4.170 16 C 0.200 3.800 17 C -0.108 4.108 18 N -0.527 5.527 19 C 0.330 3.670 20 C -0.081 4.081 21 N -0.545 5.545 22 C 0.373 3.627 23 O -0.478 6.478 24 H 0.067 0.933 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.077 0.923 28 H 0.061 0.939 29 H 0.274 0.726 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.590 -2.348 13.866 14.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.041 4.041 3 N -0.182 5.182 4 C -0.444 4.444 5 H 0.122 0.878 6 C -0.144 4.144 7 N -0.496 5.496 8 Si 0.699 3.301 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.187 1.187 12 C 0.255 3.745 13 O -0.446 6.446 14 C -0.137 4.137 15 C -0.176 4.176 16 C 0.055 3.945 17 C -0.165 4.165 18 N -0.244 5.244 19 C 0.062 3.938 20 C -0.139 4.139 21 N -0.270 5.270 22 C 0.186 3.814 23 O -0.286 6.286 24 H 0.087 0.913 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.095 0.905 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.118 0.882 31 H 0.116 0.884 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -4.399 -1.597 14.717 15.443 hybrid contribution 0.871 -1.364 -1.109 1.962 sum -3.528 -2.961 13.608 14.367 Atomic orbital electron populations 1.22149 0.96190 1.01210 1.02621 1.21848 0.94769 0.85711 1.01759 1.43760 1.56850 1.11449 1.06157 1.19009 1.37373 0.98538 0.89486 0.87800 1.25354 0.96199 0.98122 0.94688 1.69766 1.39850 1.40218 0.99741 0.87029 0.80419 0.82841 0.79766 1.20119 1.21273 1.18736 1.20020 0.82730 0.87904 0.83892 1.90578 1.49577 1.18163 1.86313 1.20637 1.03927 0.97690 0.91475 1.21067 0.95665 1.01548 0.99316 1.21407 0.95794 0.87678 0.89603 1.20814 0.91398 1.04199 1.00106 1.68056 1.23897 1.23111 1.09289 1.22895 0.83653 0.92395 0.94829 1.20526 1.03582 0.96304 0.93492 1.67727 1.34782 1.06978 1.17542 1.19139 0.87340 0.86288 0.88590 1.84566 1.40283 1.40777 1.63011 0.91348 0.92482 0.93021 0.90511 0.92108 0.91520 0.88225 0.88412 0.89741 0.89711 0.89645 0.89674 0.89661 0.89820 0.72773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 10.11 37.16 0.38 -2.12 16 2 C 0.08 1.54 4.46 -4.04 -0.02 1.52 16 3 N -0.46 -10.46 2.18 -114.82 -0.25 -10.71 16 4 C -0.32 -8.60 9.35 -14.93 -0.14 -8.74 16 5 H 0.10 3.21 7.92 -52.49 -0.42 2.79 16 6 C 0.06 1.67 5.24 -17.47 -0.09 1.58 16 7 N -0.86 -24.16 13.96 55.50 0.77 -23.39 16 8 Si 0.87 19.75 25.12 -169.99 -4.27 15.48 16 9 H -0.27 -5.76 6.67 56.52 0.38 -5.38 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.26 -5.87 7.11 56.52 0.40 -5.47 16 12 C 0.47 10.14 7.23 -10.99 -0.08 10.06 16 13 O -0.56 -14.51 15.91 5.55 0.09 -14.42 16 14 C -0.10 -1.60 3.60 -29.03 -0.10 -1.70 16 15 C -0.17 -2.94 4.42 -104.20 -0.46 -3.40 16 16 C 0.20 3.28 6.82 -82.31 -0.56 2.72 16 17 C -0.11 -1.43 9.44 36.00 0.34 -1.09 16 18 N -0.53 -8.63 10.27 -7.05 -0.07 -8.70 16 19 C 0.33 5.19 7.64 -157.23 -1.20 3.99 16 20 C -0.08 -0.88 10.32 36.00 0.37 -0.51 16 21 N -0.54 -9.42 10.36 -10.78 -0.11 -9.53 16 22 C 0.37 6.59 7.81 -16.70 -0.13 6.46 16 23 O -0.48 -7.70 12.75 -18.25 -0.23 -7.93 16 24 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.70 6.39 -51.93 -0.33 0.36 16 27 H 0.08 1.54 3.72 -51.93 -0.19 1.35 16 28 H 0.06 0.96 6.74 -51.93 -0.35 0.61 16 29 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 30 H 0.10 1.54 6.91 -51.93 -0.36 1.18 16 31 H 0.10 1.36 5.04 -51.93 -0.26 1.10 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.08 1.22 6.54 -51.93 -0.34 0.88 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.41 5.59 9.06 45.56 0.41 6.00 16 LS Contribution 315.50 15.07 4.75 4.75 Total: -1.00 -33.36 315.50 -4.98 -38.33 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -3.96 Total: 7.36 kcal Atomic # 6 Polarization: 10.46 SS G_CDS: -1.70 Total: 8.76 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: 0.34 Total: -52.33 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.14 Total: -22.36 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -4.27 Total: 15.48 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.36 -4.98 -38.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318057501.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.687 kcal (2) G-P(sol) polarization free energy of solvation -33.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds