Wall clock time and date at job start Tue Mar 31 2020 00:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46497 * 109.47089 * 2 1 4 4 C 1.37096 * 120.00034 * 263.03303 * 3 2 1 5 5 H 1.07999 * 120.00069 * 142.21846 * 4 3 2 6 6 C 1.38949 * 120.00101 * 322.21836 * 4 3 2 7 7 N 1.31415 * 120.00462 * 157.07773 * 6 4 3 8 8 Si 1.86801 * 120.00035 * 337.08430 * 6 4 3 9 9 H 1.48503 * 109.47264 * 95.19786 * 8 6 4 10 10 H 1.48503 * 109.47417 * 215.20186 * 8 6 4 11 11 H 1.48504 * 109.47202 * 335.20261 * 8 6 4 12 12 C 1.34776 * 120.00088 * 83.03636 * 3 2 1 13 13 O 1.21285 * 120.00175 * 180.02562 * 12 3 2 14 14 C 1.50700 * 119.99689 * 359.97438 * 12 3 2 15 15 C 1.50703 * 109.46947 * 180.02562 * 14 12 3 16 16 C 1.38231 * 120.82194 * 90.00510 * 15 14 12 17 17 C 1.50695 * 120.41490 * 359.70178 * 16 15 14 18 18 N 1.32494 * 119.17662 * 179.97438 * 16 15 14 19 19 C 1.31785 * 120.96447 * 359.97438 * 18 16 15 20 20 C 1.50695 * 119.09723 * 180.02562 * 19 18 16 21 21 N 1.31769 * 121.81385 * 0.02562 * 19 18 16 22 22 C 1.32826 * 120.71576 * 359.97438 * 21 19 18 23 23 O 1.35518 * 120.51083 * 180.02562 * 22 21 19 24 24 H 1.08998 * 109.46935 * 60.00378 * 1 2 3 25 25 H 1.08994 * 109.46912 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47121 * 300.00183 * 1 2 3 27 27 H 1.08997 * 109.47121 * 239.99817 * 2 1 3 28 28 H 1.08996 * 109.46970 * 120.00402 * 2 1 3 29 29 H 0.96994 * 120.00220 * 179.97438 * 7 6 4 30 30 H 1.09003 * 109.46848 * 60.00926 * 14 12 3 31 31 H 1.08999 * 109.47937 * 300.00148 * 14 12 3 32 32 H 1.08998 * 109.47609 * 89.99790 * 17 16 15 33 33 H 1.09000 * 109.47506 * 210.00298 * 17 16 15 34 34 H 1.09005 * 109.46971 * 330.00305 * 17 16 15 35 35 H 1.09005 * 109.47445 * 270.00739 * 20 19 18 36 36 H 1.09000 * 109.46888 * 30.00220 * 20 19 18 37 37 H 1.08996 * 109.47717 * 150.00554 * 20 19 18 38 38 H 0.96701 * 113.99983 * 269.98037 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3827 1.9795 -1.1785 5 1 2.1610 3.0232 -1.3453 6 6 3.0370 1.2430 -2.1583 7 7 2.9924 1.6323 -3.4127 8 14 3.9801 -0.3008 -1.6927 9 1 3.1111 -1.4892 -1.8866 10 1 5.1850 -0.4230 -2.5522 11 1 4.3941 -0.2174 -0.2690 12 6 2.1096 2.0637 1.1586 13 8 2.5134 3.2074 1.1585 14 6 1.7087 1.4062 2.4539 15 6 1.9037 2.3760 3.5909 16 6 0.8845 3.2244 3.9809 17 6 -0.4434 3.1994 3.2688 18 7 1.0913 4.0637 4.9850 19 6 2.2498 4.0981 5.6122 20 6 2.4389 5.0690 6.7492 21 7 3.2473 3.3070 5.2727 22 6 3.1158 2.4389 4.2760 23 8 4.1443 1.6269 3.9306 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5139 0.8899 29 1 3.4495 1.1184 -4.0966 30 1 2.3259 0.5231 2.6193 31 1 0.6602 1.1125 2.4032 32 1 -1.1036 2.4820 3.7560 33 1 -0.8942 4.1912 3.3055 34 1 -0.2929 2.9070 2.2295 35 1 2.8219 6.0129 6.3611 36 1 1.4826 5.2406 7.2433 37 1 3.1490 4.6559 7.4655 38 1 4.7329 2.0009 3.2607 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318057501.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:41 Heat of formation + Delta-G solvation = -48.698637 kcal Electronic energy + Delta-G solvation = -22479.227177 eV Core-core repulsion = 19128.645282 eV Total energy + Delta-G solvation = -3350.581895 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.46125 -40.58617 -38.75656 -37.13696 -35.93986 -34.38701 -33.78764 -31.56599 -31.24807 -30.02188 -28.09789 -26.09752 -24.43739 -24.10658 -22.89010 -20.68212 -19.82018 -19.09319 -18.84927 -17.99844 -17.48784 -16.90778 -16.17784 -16.11614 -15.71250 -15.22272 -14.92765 -14.86819 -14.52166 -14.26906 -14.24185 -14.05631 -13.98437 -13.53018 -13.33246 -13.06544 -13.03088 -12.96778 -12.75774 -12.66380 -12.47213 -11.94898 -11.70349 -11.57751 -11.34446 -11.07017 -10.59108 -10.36792 -10.01205 -9.72504 -8.51880 -6.13235 -0.25842 -0.09806 1.19883 1.32752 1.44546 1.90935 2.17420 2.20713 2.55493 2.75051 2.93028 2.97833 3.30480 3.62495 3.73931 3.90817 4.09663 4.11934 4.23571 4.41192 4.50335 4.53535 4.60256 4.64178 4.70319 4.72050 4.82927 4.93575 4.99878 5.05059 5.11263 5.38499 5.42800 5.54602 5.86991 6.05033 6.31508 6.55338 6.94249 7.00472 7.30257 7.85501 8.65248 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.025349 B = 0.005458 C = 0.005118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.294398 B = 5129.308758 C = 5470.091356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.072 3.928 3 N -0.471 5.471 4 C -0.330 4.330 5 H 0.042 0.958 6 C 0.016 3.984 7 N -0.909 5.909 8 Si 0.942 3.058 9 H -0.239 1.239 10 H -0.292 1.292 11 H -0.254 1.254 12 C 0.467 3.533 13 O -0.614 6.614 14 C -0.078 4.078 15 C -0.193 4.193 16 C 0.193 3.807 17 C -0.106 4.106 18 N -0.537 5.537 19 C 0.322 3.678 20 C -0.078 4.078 21 N -0.564 5.564 22 C 0.360 3.640 23 O -0.480 6.480 24 H 0.039 0.961 25 H 0.095 0.905 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.099 0.901 29 H 0.279 0.721 30 H 0.119 0.881 31 H 0.131 0.869 32 H 0.120 0.880 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.373 -4.749 16.193 17.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.050 4.050 3 N -0.192 5.192 4 C -0.458 4.458 5 H 0.060 0.940 6 C -0.187 4.187 7 N -0.547 5.547 8 Si 0.765 3.235 9 H -0.164 1.164 10 H -0.219 1.219 11 H -0.178 1.178 12 C 0.257 3.743 13 O -0.499 6.499 14 C -0.119 4.119 15 C -0.198 4.198 16 C 0.048 3.952 17 C -0.163 4.163 18 N -0.254 5.254 19 C 0.055 3.945 20 C -0.136 4.136 21 N -0.290 5.290 22 C 0.174 3.826 23 O -0.290 6.290 24 H 0.058 0.942 25 H 0.114 0.886 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.117 0.883 29 H 0.089 0.911 30 H 0.137 0.863 31 H 0.149 0.851 32 H 0.138 0.862 33 H 0.107 0.893 34 H 0.091 0.909 35 H 0.114 0.886 36 H 0.122 0.878 37 H 0.115 0.885 38 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -5.208 -4.025 17.053 18.279 hybrid contribution 1.079 -0.468 -1.796 2.146 sum -4.129 -4.493 15.257 16.432 Atomic orbital electron populations 1.22118 0.93691 1.03587 1.02226 1.22153 0.97003 0.83021 1.02826 1.43874 1.57257 1.13147 1.04966 1.18571 1.38762 0.96542 0.91926 0.93985 1.26109 0.96415 1.02114 0.94031 1.69883 1.41126 1.42592 1.01074 0.85927 0.78655 0.79426 0.79458 1.16415 1.21936 1.17810 1.20863 0.81026 0.87129 0.85246 1.90551 1.51417 1.20622 1.87302 1.20536 1.06120 0.97446 0.87766 1.21172 0.96034 1.02686 0.99957 1.21952 0.96790 0.86980 0.89502 1.20899 0.90562 1.05539 0.99262 1.68181 1.24266 1.23276 1.09713 1.23833 0.83147 0.92287 0.95278 1.20702 1.05087 0.95562 0.92278 1.67825 1.35501 1.07651 1.18006 1.19425 0.87797 0.86486 0.88932 1.84525 1.40265 1.40788 1.63380 0.94193 0.88634 0.91067 0.91946 0.88275 0.91113 0.86275 0.85126 0.86171 0.89316 0.90891 0.88598 0.87815 0.88528 0.71879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.31 10.11 71.98 0.73 -3.59 16 2 C 0.07 2.46 4.46 86.38 0.39 2.84 16 3 N -0.47 -21.23 2.18 -635.55 -1.39 -22.61 16 4 C -0.33 -18.67 9.35 84.04 0.79 -17.88 16 5 H 0.04 2.83 7.92 -2.91 -0.02 2.81 16 6 C 0.02 0.86 5.24 84.93 0.45 1.30 16 7 N -0.91 -53.05 13.96 21.66 0.30 -52.75 16 8 Si 0.94 40.21 25.12 68.60 1.72 41.93 16 9 H -0.24 -8.87 6.67 99.48 0.66 -8.20 16 10 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.25 -10.40 7.11 99.48 0.71 -9.69 16 12 C 0.47 20.12 7.23 87.66 0.63 20.76 16 13 O -0.61 -32.54 15.91 -3.04 -0.05 -32.59 16 14 C -0.08 -2.39 3.60 29.10 0.10 -2.29 16 15 C -0.19 -6.36 4.42 -19.59 -0.09 -6.45 16 16 C 0.19 6.02 6.82 42.46 0.29 6.30 16 17 C -0.11 -2.57 9.44 71.23 0.67 -1.89 16 18 N -0.54 -16.80 10.27 -176.23 -1.81 -18.61 16 19 C 0.32 9.68 7.64 138.76 1.06 10.74 16 20 C -0.08 -1.54 10.32 71.23 0.73 -0.80 16 21 N -0.56 -18.95 10.36 -300.69 -3.12 -22.06 16 22 C 0.36 12.33 7.81 84.82 0.66 12.99 16 23 O -0.48 -14.88 12.75 -88.21 -1.12 -16.01 16 24 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.07 1.64 6.39 -2.39 -0.02 1.62 16 27 H 0.06 2.31 3.72 -2.39 -0.01 2.30 16 28 H 0.10 2.63 6.74 -2.39 -0.02 2.61 16 29 H 0.28 14.96 8.31 -92.71 -0.77 14.19 16 30 H 0.12 3.22 6.91 -2.39 -0.02 3.20 16 31 H 0.13 3.11 5.04 -2.39 -0.01 3.10 16 32 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.07 1.97 6.54 -2.38 -0.02 1.95 16 35 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 36 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.42 11.19 9.06 -74.06 -0.67 10.52 16 Total: -1.00 -77.40 315.50 1.35 -76.05 By element: Atomic # 1 Polarization: 24.22 SS G_CDS: 0.39 Total: 24.62 kcal Atomic # 6 Polarization: 15.62 SS G_CDS: 6.42 Total: 22.03 kcal Atomic # 7 Polarization: -110.03 SS G_CDS: -6.01 Total: -116.04 kcal Atomic # 8 Polarization: -47.42 SS G_CDS: -1.17 Total: -48.59 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 1.72 Total: 41.93 kcal Total: -77.40 1.35 -76.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318057501.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.350 kcal (2) G-P(sol) polarization free energy of solvation -77.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds