Wall clock time and date at job start Tue Mar 31 2020 01:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36942 * 119.99955 * 2 1 4 4 H 1.07994 * 120.00099 * 202.59016 * 3 2 1 5 5 C 1.38814 * 119.99820 * 22.58976 * 3 2 1 6 6 N 1.31612 * 119.99771 * 14.76161 * 5 3 2 7 7 Si 1.86798 * 119.99835 * 194.75638 * 5 3 2 8 8 H 1.48510 * 109.46818 * 90.00328 * 7 5 3 9 9 H 1.48494 * 109.47078 * 210.00078 * 7 5 3 10 10 H 1.48501 * 109.47444 * 330.00394 * 7 5 3 11 11 C 1.46502 * 120.00060 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.46656 * 269.99522 * 11 2 1 13 13 N 1.46502 * 109.46656 * 179.97438 * 12 11 2 14 14 C 1.46504 * 120.00060 * 90.00478 * 13 12 11 15 15 C 1.34777 * 120.00144 * 269.99694 * 13 12 11 16 16 O 1.21514 * 119.99702 * 5.06076 * 15 13 12 17 17 C 1.48158 * 120.00377 * 185.05233 * 15 13 12 18 18 C 1.39978 * 120.88688 * 20.28184 * 17 15 13 19 19 C 1.37975 * 119.13047 * 179.74746 * 18 17 15 20 20 N 1.31906 * 120.97995 * 0.53537 * 19 18 17 21 21 C 1.32179 * 121.97220 * 359.71441 * 20 19 18 22 22 O 1.35682 * 119.62549 * 179.97438 * 21 20 19 23 23 C 1.38902 * 120.75011 * 0.02643 * 21 20 19 24 24 H 1.08997 * 109.46477 * 274.99778 * 1 2 3 25 25 H 1.08999 * 109.47117 * 34.99628 * 1 2 3 26 26 H 1.08999 * 109.46736 * 155.00221 * 1 2 3 27 27 H 0.97001 * 119.99563 * 180.02562 * 6 5 3 28 28 H 1.09003 * 109.47264 * 149.99761 * 11 2 1 29 29 H 1.09000 * 109.46859 * 29.99448 * 11 2 1 30 30 H 1.08993 * 109.47143 * 60.00033 * 12 11 2 31 31 H 1.09000 * 109.47426 * 299.99579 * 12 11 2 32 32 H 1.08995 * 109.47362 * 84.63697 * 14 13 12 33 33 H 1.09000 * 109.46822 * 204.64414 * 14 13 12 34 34 H 1.09003 * 109.47085 * 324.63382 * 14 13 12 35 35 H 1.07998 * 120.43257 * 359.97438 * 18 17 15 36 36 H 1.08005 * 119.51153 * 180.27090 * 19 18 17 37 37 H 0.96697 * 114.00331 * 270.01738 * 22 21 20 38 38 H 1.07997 * 120.52486 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1675 1.2219 -0.3593 5 6 1.5355 2.3420 0.4618 6 7 0.4230 2.2619 1.1605 7 14 2.2880 4.0111 0.0916 8 1 1.7398 4.5283 -1.1881 9 1 1.9596 4.9564 1.1887 10 1 3.7625 3.8756 -0.0203 11 6 2.1976 -1.2687 -0.0006 12 6 2.4526 -1.7109 1.4418 13 7 3.1846 -2.9799 1.4412 14 6 4.6496 -2.9806 1.4410 15 6 2.5103 -4.1469 1.4410 16 8 1.2987 -4.1484 1.3485 17 6 3.2462 -5.4279 1.5534 18 6 4.5457 -5.4669 2.0723 19 6 5.1955 -6.6804 2.1655 20 7 4.6143 -7.7945 1.7643 21 6 3.3911 -7.8046 1.2635 22 8 2.8392 -8.9783 0.8650 23 6 2.6646 -6.6272 1.1396 24 1 -0.3632 0.0895 1.0238 25 1 -0.3633 0.8418 -0.5894 26 1 -0.3633 -0.9314 -0.4343 27 1 -0.0064 3.0698 1.4829 28 1 3.1500 -1.1382 -0.5144 29 1 1.6084 -2.0282 -0.5147 30 1 1.5003 -1.8414 1.9556 31 1 3.0418 -0.9515 1.9559 32 1 5.0132 -2.8851 2.4641 33 1 5.0125 -3.9146 1.0121 34 1 5.0133 -2.1424 0.8465 35 1 5.0318 -4.5594 2.3989 36 1 6.1967 -6.7182 2.5690 37 1 3.0102 -9.1990 -0.0608 38 1 1.6653 -6.6397 0.7302 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319989767.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:41 Heat of formation + Delta-G solvation = -8.482036 kcal Electronic energy + Delta-G solvation = -21449.939630 eV Core-core repulsion = 18101.101658 eV Total energy + Delta-G solvation = -3348.837972 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.00846 -40.51782 -38.08364 -37.86612 -36.62092 -34.11952 -33.22916 -31.58863 -30.10905 -28.11674 -27.86804 -26.28647 -24.43045 -24.35854 -22.51219 -21.14682 -19.62597 -18.80182 -18.33616 -17.69226 -17.23538 -17.04963 -16.78032 -16.47558 -16.17786 -15.51371 -15.44847 -14.95836 -14.68118 -14.49586 -14.16203 -14.04573 -13.90549 -13.47454 -13.10547 -12.92259 -12.85299 -12.75622 -12.47253 -12.24955 -12.05780 -11.96772 -11.65013 -11.41282 -11.02600 -10.68988 -10.48179 -9.97475 -9.85697 -8.81513 -7.83998 -5.34240 -0.42489 -0.08731 1.48549 1.50536 1.59238 1.67453 1.80021 2.50354 2.53003 2.73008 3.22459 3.30944 3.68070 3.72939 3.85649 3.90543 4.08360 4.21439 4.37894 4.40732 4.60987 4.63656 4.65676 4.67326 4.77673 4.87657 4.89753 4.97276 5.09997 5.23636 5.38506 5.47322 5.61431 5.65062 6.28498 6.29922 6.55445 6.82406 6.96425 7.10638 7.80906 8.28505 9.20081 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.038515 B = 0.003452 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.821238 B = 8108.600607 C = 8590.822017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.614 5.614 3 C -0.267 4.267 4 H 0.080 0.920 5 C -0.052 4.052 6 N -0.938 5.938 7 Si 0.973 3.027 8 H -0.289 1.289 9 H -0.297 1.297 10 H -0.261 1.261 11 C 0.148 3.852 12 C 0.112 3.888 13 N -0.596 5.596 14 C 0.046 3.954 15 C 0.544 3.456 16 O -0.578 6.578 17 C -0.077 4.077 18 C -0.161 4.161 19 C 0.128 3.872 20 N -0.509 5.509 21 C 0.304 3.696 22 O -0.490 6.490 23 C -0.146 4.146 24 H 0.005 0.995 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.248 0.752 28 H 0.061 0.939 29 H 0.034 0.966 30 H 0.043 0.957 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.110 0.890 34 H 0.082 0.918 35 H 0.197 0.803 36 H 0.210 0.790 37 H 0.422 0.578 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.239 -17.294 0.230 22.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.338 5.338 3 C -0.397 4.397 4 H 0.098 0.902 5 C -0.247 4.247 6 N -0.585 5.585 7 Si 0.801 3.199 8 H -0.216 1.216 9 H -0.224 1.224 10 H -0.185 1.185 11 C 0.020 3.980 12 C -0.013 4.013 13 N -0.327 5.327 14 C -0.094 4.094 15 C 0.332 3.668 16 O -0.458 6.458 17 C -0.088 4.088 18 C -0.180 4.180 19 C -0.028 4.028 20 N -0.229 5.229 21 C 0.126 3.874 22 O -0.300 6.300 23 C -0.168 4.168 24 H 0.023 0.977 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.058 0.942 28 H 0.079 0.921 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.099 0.901 32 H 0.112 0.888 33 H 0.128 0.872 34 H 0.100 0.900 35 H 0.214 0.786 36 H 0.227 0.773 37 H 0.283 0.717 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 13.709 -17.984 0.818 22.628 hybrid contribution -0.923 1.802 -0.562 2.101 sum 12.787 -16.181 0.256 20.625 Atomic orbital electron populations 1.20525 0.83109 0.95536 0.97647 1.44157 1.01980 1.01739 1.85883 1.19599 0.98764 0.86051 1.35284 0.90200 1.25858 0.98664 1.02096 0.98126 1.70262 1.21766 1.27695 1.38736 0.85186 0.78724 0.79389 0.76635 1.21637 1.22378 1.18531 1.21148 0.96005 0.86528 0.94283 1.22106 0.95907 0.83190 1.00125 1.47930 1.08925 1.04871 1.70980 1.22947 0.76823 1.05601 1.04049 1.18739 0.86734 0.84474 0.76823 1.90783 1.15865 1.87658 1.51490 1.20166 0.95815 0.92346 1.00455 1.23635 0.92915 1.03062 0.98389 1.23279 1.00969 0.85047 0.93544 1.67142 1.10861 1.33475 1.11391 1.19008 0.88050 0.84959 0.95401 1.84746 1.73728 1.36104 1.35463 1.22221 1.02076 0.91275 1.01262 0.97717 0.96173 0.96216 0.94242 0.92076 0.94772 0.93844 0.90077 0.88827 0.87169 0.89970 0.78631 0.77323 0.71667 0.84375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.35 9.03 127.77 1.15 10.51 16 2 N -0.61 -31.45 2.92 -726.92 -2.12 -33.58 16 3 C -0.27 -14.33 9.65 84.03 0.81 -13.52 16 4 H 0.08 4.03 7.86 -2.91 -0.02 4.00 16 5 C -0.05 -2.87 5.06 84.86 0.43 -2.44 16 6 N -0.94 -55.72 10.79 21.65 0.23 -55.49 16 7 Si 0.97 43.97 29.58 68.60 2.03 46.00 16 8 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 9 H -0.30 -13.61 7.11 99.48 0.71 -12.90 16 10 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 11 C 0.15 6.13 6.03 86.38 0.52 6.65 16 12 C 0.11 4.21 5.72 86.38 0.49 4.70 16 13 N -0.60 -16.81 2.87 -849.83 -2.44 -19.25 16 14 C 0.05 0.73 8.69 127.77 1.11 1.84 16 15 C 0.54 17.08 7.56 86.88 0.66 17.74 16 16 O -0.58 -23.96 16.25 -3.76 -0.06 -24.02 16 17 C -0.08 -1.80 5.62 -19.90 -0.11 -1.91 16 18 C -0.16 -2.33 7.69 22.63 0.17 -2.15 16 19 C 0.13 1.67 11.17 84.62 0.94 2.62 16 20 N -0.51 -9.94 10.36 -309.13 -3.20 -13.15 16 21 C 0.30 6.47 7.74 84.80 0.66 7.13 16 22 O -0.49 -9.06 13.56 -90.00 -1.22 -10.28 16 23 C -0.15 -3.49 9.61 22.75 0.22 -3.27 16 24 H 0.00 0.26 7.35 -2.39 -0.02 0.24 16 25 H 0.02 1.10 7.35 -2.39 -0.02 1.08 16 26 H 0.02 0.93 7.84 -2.39 -0.02 0.91 16 27 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 28 H 0.06 2.30 8.03 -2.39 -0.02 2.29 16 29 H 0.03 1.45 7.86 -2.39 -0.02 1.44 16 30 H 0.04 1.94 7.49 -2.39 -0.02 1.92 16 31 H 0.08 3.05 8.07 -2.39 -0.02 3.03 16 32 H 0.09 0.99 7.25 -2.39 -0.02 0.97 16 33 H 0.11 1.22 4.90 -2.39 -0.01 1.21 16 34 H 0.08 1.31 8.11 -2.39 -0.02 1.29 16 35 H 0.20 1.65 4.15 -2.91 -0.01 1.64 16 36 H 0.21 0.88 8.06 -2.91 -0.02 0.86 16 37 H 0.42 3.27 9.06 -74.06 -0.67 2.60 16 38 H 0.14 3.57 7.87 -2.91 -0.02 3.54 16 Total: -1.00 -77.44 320.79 0.69 -76.75 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: 0.42 Total: 5.12 kcal Atomic # 6 Polarization: 20.84 SS G_CDS: 7.06 Total: 27.89 kcal Atomic # 7 Polarization: -113.93 SS G_CDS: -7.53 Total: -121.46 kcal Atomic # 8 Polarization: -33.02 SS G_CDS: -1.28 Total: -34.30 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -77.44 0.69 -76.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319989767.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.267 kcal (2) G-P(sol) polarization free energy of solvation -77.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds