Wall clock time and date at job start Tue Mar 31 2020 01:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 N 1.40092 * 126.03976 * 2 1 4 4 C 1.30839 * 108.20433 * 180.02562 * 3 2 1 5 5 C 1.39874 * 108.20223 * 359.77940 * 4 3 2 6 6 C 1.34956 * 126.03787 * 180.02562 * 2 1 3 7 7 C 1.50702 * 126.12390 * 359.94377 * 6 2 1 8 8 C 1.52997 * 109.46904 * 264.99914 * 7 6 2 9 9 C 1.50696 * 109.47129 * 180.02562 * 8 7 6 10 10 O 1.21281 * 119.99958 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00331 * 179.97438 * 9 8 7 12 12 C 1.47579 * 134.49442 * 179.97438 * 11 9 8 13 13 C 1.53953 * 86.11613 * 155.35662 * 12 11 9 14 14 O 1.42891 * 113.74249 * 269.15295 * 13 12 11 15 15 C 1.50704 * 113.73748 * 137.95211 * 13 12 11 16 16 H 1.07998 * 120.00120 * 3.90458 * 15 13 12 17 17 C 1.37883 * 119.99782 * 183.91187 * 15 13 12 18 18 N 1.31513 * 120.00053 * 185.23007 * 17 15 13 19 19 Si 1.86796 * 119.99938 * 5.22387 * 17 15 13 20 20 H 1.48495 * 109.47550 * 270.00395 * 19 17 15 21 21 H 1.48511 * 109.47116 * 30.00543 * 19 17 15 22 22 H 1.48499 * 109.47060 * 149.99973 * 19 17 15 23 23 C 1.47582 * 134.49131 * 359.97438 * 11 9 8 24 24 H 1.09006 * 109.47249 * 269.97565 * 1 2 3 25 25 H 1.09000 * 109.47255 * 29.97008 * 1 2 3 26 26 H 1.09003 * 109.47529 * 149.97525 * 1 2 3 27 27 H 1.07996 * 125.89667 * 179.97438 * 4 3 2 28 28 H 1.08003 * 126.03269 * 180.23275 * 5 4 3 29 29 H 1.08998 * 109.46875 * 144.99506 * 7 6 2 30 30 H 1.08999 * 109.47108 * 24.99574 * 7 6 2 31 31 H 1.08998 * 109.47688 * 60.00090 * 8 7 6 32 32 H 1.09008 * 109.46992 * 299.99931 * 8 7 6 33 33 H 1.08998 * 113.77112 * 41.06103 * 12 11 9 34 34 H 1.09000 * 113.87384 * 269.66796 * 12 11 9 35 35 H 0.96707 * 113.99791 * 172.50486 * 14 13 12 36 36 H 0.97008 * 119.99681 * 354.94910 * 18 17 15 37 37 H 1.09003 * 113.77322 * 90.33860 * 23 11 9 38 38 H 1.09009 * 113.76717 * 318.93870 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5346 0.7321 -0.0006 5 6 3.5436 -0.6666 0.0042 6 6 2.2589 -1.0913 -0.0005 7 6 1.7972 -2.5259 0.0001 8 6 1.7619 -3.0496 1.4372 9 6 1.3008 -4.4843 1.4377 10 8 1.0270 -5.0337 0.3917 11 7 1.1928 -5.1570 2.6006 12 6 0.7863 -6.5271 2.9690 13 6 1.6432 -6.3292 4.2326 14 8 2.9997 -6.7516 4.0798 15 6 1.0014 -6.8574 5.4897 16 1 0.0568 -7.3782 5.4360 17 6 1.6202 -6.6758 6.7084 18 7 1.1141 -7.2244 7.7911 19 14 3.1775 -5.6505 6.8215 20 1 4.3616 -6.5260 6.6307 21 1 3.1597 -4.6052 5.7667 22 1 3.2492 -5.0048 8.1568 23 6 1.4335 -4.8194 4.0169 24 1 -0.3634 -0.0004 1.0277 25 1 -0.3634 0.8902 -0.5134 26 1 -0.3634 -0.8898 -0.5142 27 1 4.4054 1.3709 -0.0011 28 1 4.4211 -1.2963 0.0085 29 1 2.4868 -3.1296 -0.5899 30 1 0.7990 -2.5865 -0.4334 31 1 1.0723 -2.4459 2.0271 32 1 2.7602 -2.9890 1.8706 33 1 1.1675 -7.2946 2.2955 34 1 -0.2794 -6.6312 3.1728 35 1 3.5687 -6.5254 4.8282 36 1 0.2670 -7.6951 7.7458 37 1 0.5577 -4.4200 4.5284 38 1 2.3316 -4.2235 4.1801 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321051606.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:36 Heat of formation + Delta-G solvation = 33.940875 kcal Electronic energy + Delta-G solvation = -21563.867642 eV Core-core repulsion = 18216.869265 eV Total energy + Delta-G solvation = -3346.998377 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.36605 -39.84680 -37.85858 -34.47645 -34.13000 -33.08089 -32.66640 -29.92995 -28.49483 -26.88436 -25.94508 -25.20034 -23.74035 -21.26423 -20.14996 -19.72466 -18.63158 -18.05302 -17.13406 -16.26418 -16.07200 -15.68694 -15.63453 -15.08620 -14.70657 -14.21351 -14.02574 -13.59292 -13.48232 -13.05091 -12.78877 -12.66419 -12.60610 -12.51860 -12.18540 -12.05846 -11.93034 -11.43313 -11.23001 -10.84553 -10.72948 -10.44477 -10.00430 -9.60327 -9.53248 -9.35339 -9.06047 -8.64615 -8.59753 -8.10783 -6.76216 -4.52935 1.71413 2.37494 2.71155 2.96031 3.05339 3.08822 3.27164 3.32325 4.12626 4.36263 4.40640 4.68147 4.81662 4.87813 4.93753 5.00864 5.01814 5.14913 5.20709 5.37495 5.51709 5.53044 5.63674 5.69980 5.88887 5.96542 6.00180 6.11083 6.18691 6.26442 6.36343 6.53423 6.54898 6.86308 7.43923 7.58075 8.01552 8.20796 8.41426 8.49136 8.55150 9.22935 10.59654 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.023423 B = 0.004109 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.094279 B = 6813.191942 C = 7304.086165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.372 5.372 3 N -0.303 5.303 4 C 0.046 3.954 5 C -0.273 4.273 6 C 0.091 3.909 7 C -0.041 4.041 8 C -0.127 4.127 9 C 0.530 3.470 10 O -0.562 6.562 11 N -0.633 5.633 12 C 0.126 3.874 13 C 0.197 3.803 14 O -0.554 6.554 15 C -0.612 4.612 16 H 0.072 0.928 17 C 0.035 3.965 18 N -0.891 5.891 19 Si 1.031 2.969 20 H -0.275 1.275 21 H -0.268 1.268 22 H -0.279 1.279 23 C 0.059 3.941 24 H 0.075 0.925 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.182 0.818 28 H 0.148 0.852 29 H 0.099 0.901 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.355 0.645 36 H 0.274 0.726 37 H 0.092 0.908 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.779 12.987 -11.174 17.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.155 5.155 3 N -0.124 5.124 4 C -0.139 4.139 5 C -0.302 4.302 6 C -0.037 4.037 7 C -0.080 4.080 8 C -0.168 4.168 9 C 0.319 3.681 10 O -0.442 6.442 11 N -0.367 5.367 12 C 0.004 3.996 13 C 0.156 3.844 14 O -0.364 6.364 15 C -0.650 4.650 16 H 0.090 0.910 17 C -0.173 4.173 18 N -0.523 5.523 19 Si 0.860 3.140 20 H -0.202 1.202 21 H -0.194 1.194 22 H -0.206 1.206 23 C -0.064 4.064 24 H 0.094 0.906 25 H 0.107 0.893 26 H 0.107 0.893 27 H 0.199 0.801 28 H 0.166 0.834 29 H 0.117 0.883 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.115 0.885 33 H 0.093 0.907 34 H 0.108 0.892 35 H 0.205 0.795 36 H 0.084 0.916 37 H 0.110 0.890 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.630 14.112 -11.402 18.216 hybrid contribution -0.540 -0.913 -0.333 1.112 sum 1.090 13.199 -11.736 17.696 Atomic orbital electron populations 1.21877 0.74506 1.04470 1.03580 1.48510 1.06517 1.03440 1.57056 1.77343 1.01908 1.07977 1.25215 1.23822 0.95186 0.95109 0.99827 1.21287 0.96379 0.95030 1.17505 1.21145 0.91372 0.90368 1.00793 1.19989 1.03470 0.87692 0.96863 1.21512 1.04045 0.93580 0.97667 1.20100 0.77832 0.87629 0.82502 1.90654 1.52476 1.70160 1.30896 1.50168 1.64968 1.15532 1.06018 1.23256 0.99120 0.82839 0.94345 1.20502 0.80912 0.88648 0.94331 1.86457 1.21196 1.82811 1.45916 1.22277 1.10041 1.41737 0.90901 0.91024 1.25819 1.03211 0.96104 0.92141 1.70768 1.19621 1.31463 1.30472 0.84295 0.75522 0.76998 0.77199 1.20173 1.19352 1.20555 1.24762 1.00996 1.02521 0.78128 0.90607 0.89314 0.89329 0.80063 0.83446 0.88264 0.90002 0.89364 0.88474 0.90728 0.89174 0.79500 0.91551 0.88952 0.90845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.81 11.27 59.84 0.67 1.49 16 2 N -0.37 -4.45 4.01 -63.89 -0.26 -4.71 16 3 N -0.30 -3.97 12.58 30.62 0.39 -3.59 16 4 C 0.05 0.52 12.03 -17.36 -0.21 0.31 16 5 C -0.27 -3.13 10.72 -40.01 -0.43 -3.56 16 6 C 0.09 1.08 6.18 -82.26 -0.51 0.58 16 7 C -0.04 -0.48 4.79 -27.88 -0.13 -0.62 16 8 C -0.13 -1.68 5.43 -27.89 -0.15 -1.84 16 9 C 0.53 9.36 8.06 -10.99 -0.09 9.27 16 10 O -0.56 -11.41 16.71 5.56 0.09 -11.31 16 11 N -0.63 -12.03 3.61 -178.30 -0.64 -12.67 16 12 C 0.13 2.58 8.23 -2.97 -0.02 2.55 16 13 C 0.20 4.35 1.06 -90.84 -0.10 4.25 16 14 O -0.55 -12.52 13.42 -35.23 -0.47 -12.99 16 15 C -0.61 -15.45 9.04 -34.44 -0.31 -15.76 16 16 H 0.07 1.93 8.04 -52.49 -0.42 1.51 16 17 C 0.03 0.90 5.47 -17.82 -0.10 0.80 16 18 N -0.89 -24.93 13.70 55.43 0.76 -24.17 16 19 Si 1.03 21.48 24.79 -169.99 -4.21 17.27 16 20 H -0.27 -5.45 6.95 56.52 0.39 -5.06 16 21 H -0.27 -4.88 4.86 56.52 0.27 -4.61 16 22 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 23 C 0.06 1.11 6.78 -2.97 -0.02 1.09 16 24 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.09 0.62 6.98 -51.93 -0.36 0.26 16 27 H 0.18 1.42 8.06 -52.49 -0.42 1.00 16 28 H 0.15 1.44 8.06 -52.48 -0.42 1.02 16 29 H 0.10 1.21 8.10 -51.93 -0.42 0.79 16 30 H 0.08 0.94 6.90 -51.93 -0.36 0.58 16 31 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.10 1.23 8.14 -51.92 -0.42 0.81 16 33 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 34 H 0.09 1.74 8.09 -51.93 -0.42 1.32 16 35 H 0.35 7.40 4.23 45.56 0.19 7.59 16 36 H 0.27 7.64 8.72 -40.82 -0.36 7.28 16 37 H 0.09 1.68 8.09 -51.93 -0.42 1.26 16 38 H 0.07 1.30 6.54 -51.92 -0.34 0.96 16 LS Contribution 319.29 15.07 4.81 4.81 Total: -1.00 -31.75 319.29 -5.73 -37.48 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -4.80 Total: 11.31 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -1.40 Total: -1.43 kcal Atomic # 7 Polarization: -45.38 SS G_CDS: 0.24 Total: -45.14 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.38 Total: -24.31 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.21 Total: 17.27 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.75 -5.73 -37.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321051606.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.422 kcal (2) G-P(sol) polarization free energy of solvation -31.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds