Wall clock time and date at job start Tue Mar 31 2020 01:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 N 1.40092 * 126.03976 * 2 1 4 4 C 1.30839 * 108.20433 * 180.02562 * 3 2 1 5 5 C 1.39874 * 108.20223 * 359.77940 * 4 3 2 6 6 C 1.34956 * 126.03787 * 180.02562 * 2 1 3 7 7 C 1.50702 * 126.12390 * 359.94377 * 6 2 1 8 8 C 1.52997 * 109.46904 * 264.99914 * 7 6 2 9 9 C 1.50696 * 109.47129 * 180.02562 * 8 7 6 10 10 O 1.21281 * 119.99958 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00331 * 179.97438 * 9 8 7 12 12 C 1.47579 * 134.49442 * 179.97438 * 11 9 8 13 13 C 1.53953 * 86.11613 * 155.35662 * 12 11 9 14 14 O 1.42891 * 113.74249 * 269.15295 * 13 12 11 15 15 C 1.50704 * 113.73748 * 137.95211 * 13 12 11 16 16 H 1.07998 * 120.00120 * 3.90458 * 15 13 12 17 17 C 1.37883 * 119.99782 * 183.91187 * 15 13 12 18 18 N 1.31513 * 120.00053 * 185.23007 * 17 15 13 19 19 Si 1.86796 * 119.99938 * 5.22387 * 17 15 13 20 20 H 1.48495 * 109.47550 * 270.00395 * 19 17 15 21 21 H 1.48511 * 109.47116 * 30.00543 * 19 17 15 22 22 H 1.48499 * 109.47060 * 149.99973 * 19 17 15 23 23 C 1.47582 * 134.49131 * 359.97438 * 11 9 8 24 24 H 1.09006 * 109.47249 * 269.97565 * 1 2 3 25 25 H 1.09000 * 109.47255 * 29.97008 * 1 2 3 26 26 H 1.09003 * 109.47529 * 149.97525 * 1 2 3 27 27 H 1.07996 * 125.89667 * 179.97438 * 4 3 2 28 28 H 1.08003 * 126.03269 * 180.23275 * 5 4 3 29 29 H 1.08998 * 109.46875 * 144.99506 * 7 6 2 30 30 H 1.08999 * 109.47108 * 24.99574 * 7 6 2 31 31 H 1.08998 * 109.47688 * 60.00090 * 8 7 6 32 32 H 1.09008 * 109.46992 * 299.99931 * 8 7 6 33 33 H 1.08998 * 113.77112 * 41.06103 * 12 11 9 34 34 H 1.09000 * 113.87384 * 269.66796 * 12 11 9 35 35 H 0.96707 * 113.99791 * 172.50486 * 14 13 12 36 36 H 0.97008 * 119.99681 * 354.94910 * 18 17 15 37 37 H 1.09003 * 113.77322 * 90.33860 * 23 11 9 38 38 H 1.09009 * 113.76717 * 318.93870 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5346 0.7321 -0.0006 5 6 3.5436 -0.6666 0.0042 6 6 2.2589 -1.0913 -0.0005 7 6 1.7972 -2.5259 0.0001 8 6 1.7619 -3.0496 1.4372 9 6 1.3008 -4.4843 1.4377 10 8 1.0270 -5.0337 0.3917 11 7 1.1928 -5.1570 2.6006 12 6 0.7863 -6.5271 2.9690 13 6 1.6432 -6.3292 4.2326 14 8 2.9997 -6.7516 4.0798 15 6 1.0014 -6.8574 5.4897 16 1 0.0568 -7.3782 5.4360 17 6 1.6202 -6.6758 6.7084 18 7 1.1141 -7.2244 7.7911 19 14 3.1775 -5.6505 6.8215 20 1 4.3616 -6.5260 6.6307 21 1 3.1597 -4.6052 5.7667 22 1 3.2492 -5.0048 8.1568 23 6 1.4335 -4.8194 4.0169 24 1 -0.3634 -0.0004 1.0277 25 1 -0.3634 0.8902 -0.5134 26 1 -0.3634 -0.8898 -0.5142 27 1 4.4054 1.3709 -0.0011 28 1 4.4211 -1.2963 0.0085 29 1 2.4868 -3.1296 -0.5899 30 1 0.7990 -2.5865 -0.4334 31 1 1.0723 -2.4459 2.0271 32 1 2.7602 -2.9890 1.8706 33 1 1.1675 -7.2946 2.2955 34 1 -0.2794 -6.6312 3.1728 35 1 3.5687 -6.5254 4.8282 36 1 0.2670 -7.6951 7.7458 37 1 0.5577 -4.4200 4.5284 38 1 2.3316 -4.2235 4.1801 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321051606.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:35 Heat of formation + Delta-G solvation = 9.975595 kcal Electronic energy + Delta-G solvation = -21564.906854 eV Core-core repulsion = 18216.869265 eV Total energy + Delta-G solvation = -3348.037589 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.20646 -41.37274 -39.38474 -36.15806 -35.11745 -34.64139 -33.88505 -31.18768 -29.82073 -27.61880 -27.46448 -26.85988 -24.98174 -22.07711 -21.79794 -20.59074 -20.15080 -19.88400 -18.30706 -17.75633 -17.33439 -17.00857 -16.84441 -16.22755 -15.97777 -15.37591 -15.16633 -15.09375 -14.62783 -14.39905 -14.15020 -13.94883 -13.73187 -13.67317 -13.34131 -13.19330 -13.05032 -13.02160 -12.50650 -12.17869 -12.08660 -11.67130 -11.58579 -11.28535 -11.09189 -10.92131 -10.40337 -10.22815 -9.68280 -9.46766 -8.80904 -6.59724 0.85803 1.40152 1.48081 1.58564 1.62320 1.63849 1.83074 1.96553 2.42035 2.85675 3.19855 3.42364 3.71452 3.80996 3.85360 3.93050 3.98640 4.33413 4.34618 4.35815 4.41925 4.46313 4.59961 4.62788 4.64085 4.68796 4.80830 4.84225 4.88048 4.94670 5.02215 5.27456 5.57714 5.76064 5.90506 6.07875 6.38162 6.72922 6.75470 6.79824 7.07736 7.26721 8.53765 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.023423 B = 0.004109 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.094279 B = 6813.191942 C = 7304.086165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.379 5.379 3 N -0.334 5.334 4 C 0.043 3.957 5 C -0.281 4.281 6 C 0.083 3.917 7 C -0.031 4.031 8 C -0.115 4.115 9 C 0.528 3.472 10 O -0.590 6.590 11 N -0.635 5.635 12 C 0.121 3.879 13 C 0.185 3.815 14 O -0.562 6.562 15 C -0.616 4.616 16 H 0.036 0.964 17 C -0.013 4.013 18 N -0.927 5.927 19 Si 1.064 2.936 20 H -0.258 1.258 21 H -0.222 1.222 22 H -0.285 1.285 23 C 0.074 3.926 24 H 0.084 0.916 25 H 0.096 0.904 26 H 0.100 0.900 27 H 0.209 0.791 28 H 0.162 0.838 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.106 0.894 32 H 0.111 0.889 33 H 0.066 0.934 34 H 0.093 0.907 35 H 0.363 0.637 36 H 0.258 0.742 37 H 0.101 0.899 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.307 15.235 -12.114 19.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.162 5.162 3 N -0.156 5.156 4 C -0.142 4.142 5 C -0.310 4.310 6 C -0.045 4.045 7 C -0.070 4.070 8 C -0.156 4.156 9 C 0.320 3.680 10 O -0.472 6.472 11 N -0.368 5.368 12 C -0.002 4.002 13 C 0.144 3.856 14 O -0.373 6.373 15 C -0.654 4.654 16 H 0.054 0.946 17 C -0.213 4.213 18 N -0.561 5.561 19 Si 0.884 3.116 20 H -0.184 1.184 21 H -0.145 1.145 22 H -0.212 1.212 23 C -0.048 4.048 24 H 0.103 0.897 25 H 0.115 0.885 26 H 0.119 0.881 27 H 0.226 0.774 28 H 0.180 0.820 29 H 0.113 0.887 30 H 0.102 0.898 31 H 0.124 0.876 32 H 0.129 0.871 33 H 0.084 0.916 34 H 0.111 0.889 35 H 0.214 0.786 36 H 0.067 0.933 37 H 0.119 0.881 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.137 16.368 -12.374 20.757 hybrid contribution -1.097 -1.704 -0.103 2.029 sum 2.040 14.664 -12.477 19.361 Atomic orbital electron populations 1.22131 0.73059 1.05542 1.04509 1.48787 1.07525 1.03112 1.56802 1.77306 1.02886 1.09004 1.26415 1.24337 0.95526 0.95586 0.98733 1.21594 0.96805 0.95423 1.17170 1.21167 0.91768 0.90237 1.01327 1.19860 1.03548 0.87651 0.95986 1.21498 1.04910 0.90222 0.98929 1.20878 0.76743 0.89022 0.81340 1.90647 1.53581 1.71229 1.31782 1.50139 1.65351 1.14736 1.06615 1.23183 0.99145 0.84100 0.93734 1.20523 0.80735 0.91164 0.93188 1.86439 1.21160 1.83364 1.46290 1.22411 1.08913 1.41144 0.92887 0.94584 1.27320 1.06072 0.96309 0.91572 1.70914 1.19675 1.33683 1.31866 0.83980 0.72250 0.76998 0.78349 1.18367 1.14517 1.21192 1.24553 1.02448 0.99855 0.77941 0.89712 0.88497 0.88123 0.77396 0.82020 0.88672 0.89835 0.87612 0.87090 0.91586 0.88862 0.78600 0.93300 0.88085 0.88369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.28 11.27 127.77 1.44 2.72 16 2 N -0.38 -8.18 4.01 -356.04 -1.43 -9.61 16 3 N -0.33 -8.07 12.58 -57.02 -0.72 -8.78 16 4 C 0.04 0.86 12.03 85.24 1.03 1.88 16 5 C -0.28 -5.64 10.72 21.99 0.24 -5.40 16 6 C 0.08 1.76 6.18 41.40 0.26 2.01 16 7 C -0.03 -0.65 4.79 29.85 0.14 -0.51 16 8 C -0.12 -2.63 5.43 29.85 0.16 -2.47 16 9 C 0.53 17.28 8.06 87.66 0.71 17.99 16 10 O -0.59 -23.00 16.71 -3.03 -0.05 -23.05 16 11 N -0.63 -22.55 3.61 -840.24 -3.03 -25.58 16 12 C 0.12 4.86 8.23 86.48 0.71 5.57 16 13 C 0.18 7.88 1.06 -10.88 -0.01 7.87 16 14 O -0.56 -24.09 13.42 -148.98 -2.00 -26.09 16 15 C -0.62 -31.38 9.04 25.60 0.23 -31.15 16 16 H 0.04 2.03 8.04 -2.91 -0.02 2.01 16 17 C -0.01 -0.65 5.47 84.66 0.46 -0.19 16 18 N -0.93 -53.19 13.70 21.45 0.29 -52.89 16 19 Si 1.06 41.06 24.79 68.60 1.70 42.76 16 20 H -0.26 -9.26 6.95 99.48 0.69 -8.57 16 21 H -0.22 -6.84 4.86 99.48 0.48 -6.35 16 22 H -0.29 -11.34 7.11 99.48 0.71 -10.63 16 23 C 0.07 2.57 6.78 86.48 0.59 3.16 16 24 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 25 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.10 1.18 6.98 -2.39 -0.02 1.17 16 27 H 0.21 2.65 8.06 -2.91 -0.02 2.63 16 28 H 0.16 2.65 8.06 -2.91 -0.02 2.62 16 29 H 0.09 2.09 8.10 -2.39 -0.02 2.07 16 30 H 0.08 1.72 6.90 -2.39 -0.02 1.70 16 31 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.11 2.30 8.14 -2.38 -0.02 2.28 16 33 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 34 H 0.09 3.62 8.09 -2.39 -0.02 3.60 16 35 H 0.36 13.97 4.23 -74.05 -0.31 13.65 16 36 H 0.26 15.07 8.72 -92.70 -0.81 14.26 16 37 H 0.10 3.35 8.09 -2.39 -0.02 3.33 16 38 H 0.10 2.93 6.54 -2.38 -0.02 2.91 16 Total: -1.00 -69.25 319.29 1.20 -68.05 By element: Atomic # 1 Polarization: 33.23 SS G_CDS: 0.49 Total: 33.71 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: 5.95 Total: 1.49 kcal Atomic # 7 Polarization: -91.98 SS G_CDS: -4.88 Total: -96.87 kcal Atomic # 8 Polarization: -47.10 SS G_CDS: -2.05 Total: -49.15 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 1.70 Total: 42.76 kcal Total: -69.25 1.20 -68.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321051606.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.028 kcal (2) G-P(sol) polarization free energy of solvation -69.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds