Wall clock time and date at job start Tue Mar 31 2020 01:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46501 * 120.00600 * 2 1 4 4 C 1.52999 * 109.47163 * 270.00546 * 3 2 1 5 5 C 1.52999 * 109.47098 * 179.97438 * 4 3 2 6 6 N 1.46496 * 109.46958 * 179.97438 * 5 4 3 7 7 C 1.36945 * 119.99955 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99517 * 0.02562 * 7 6 5 9 9 C 1.38809 * 119.99903 * 179.97438 * 7 6 5 10 10 N 1.31617 * 119.99551 * 180.02562 * 9 7 6 11 11 Si 1.86795 * 120.00099 * 0.02562 * 9 7 6 12 12 H 1.48503 * 109.46864 * 90.00137 * 11 9 7 13 13 H 1.48502 * 109.47123 * 209.99621 * 11 9 7 14 14 H 1.48500 * 109.47549 * 329.99975 * 11 9 7 15 15 C 1.34785 * 119.99647 * 179.97438 * 2 1 3 16 16 O 1.21533 * 119.99610 * 184.35317 * 15 2 1 17 17 C 1.47975 * 119.99956 * 4.35937 * 15 2 1 18 18 C 1.39919 * 120.91520 * 150.00208 * 17 15 2 19 19 C 1.38009 * 119.00912 * 180.02562 * 18 17 15 20 20 N 1.31984 * 120.89526 * 0.02562 * 19 18 17 21 21 O 1.41603 * 118.99113 * 179.97438 * 20 19 18 22 22 C 1.31995 * 122.02701 * 0.24174 * 20 19 18 23 23 C 1.38018 * 120.88301 * 359.48553 * 22 20 19 24 24 H 1.09005 * 109.47090 * 272.53148 * 1 2 3 25 25 H 1.09007 * 109.46981 * 32.52766 * 1 2 3 26 26 H 1.08998 * 109.47694 * 152.53596 * 1 2 3 27 27 H 1.09004 * 109.46773 * 29.99994 * 3 2 1 28 28 H 1.08998 * 109.47132 * 150.00081 * 3 2 1 29 29 H 1.09004 * 109.46825 * 299.99417 * 4 3 2 30 30 H 1.09002 * 109.47275 * 59.99280 * 4 3 2 31 31 H 1.09004 * 109.46828 * 299.99442 * 5 4 3 32 32 H 1.08998 * 109.47143 * 59.99568 * 5 4 3 33 33 H 0.97002 * 120.00306 * 359.97438 * 6 5 4 34 34 H 0.97002 * 119.99539 * 179.97438 * 10 9 7 35 35 H 1.07998 * 120.49107 * 359.97438 * 18 17 15 36 36 H 1.08002 * 119.55361 * 180.02562 * 19 18 17 37 37 H 1.07988 * 119.56007 * 179.73936 * 22 20 19 38 38 H 1.08001 * 120.49262 * 180.24044 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2171 3.0356 -1.4425 6 7 3.4617 3.4582 -2.8236 7 6 4.1342 4.6247 -3.0739 8 1 4.4845 5.2327 -2.2530 9 6 4.3664 5.0248 -4.3826 10 7 5.0132 6.1456 -4.6230 11 14 3.7611 3.9727 -5.8024 12 1 2.3879 4.3935 -6.1799 13 1 4.6681 4.1421 -6.9659 14 1 3.7459 2.5461 -5.3901 15 6 2.1388 -1.1673 0.0005 16 8 3.3515 -1.1688 0.0804 17 6 1.4021 -2.4470 -0.0963 18 6 1.9826 -3.5667 -0.7021 19 6 1.2598 -4.7403 -0.7714 20 7 0.0384 -4.8141 -0.2769 21 8 -0.6671 -6.0383 -0.3705 22 6 -0.5479 -3.7805 0.2977 23 6 0.1053 -2.5703 0.4145 24 1 -0.3633 0.0454 1.0267 25 1 -0.3633 0.8665 -0.5526 26 1 -0.3634 -0.9118 -0.4739 27 1 1.6085 2.0283 0.5139 28 1 3.1500 1.1382 0.5138 29 1 3.0416 0.9507 -1.9563 30 1 1.5001 1.8407 -1.9563 31 1 2.6277 3.7951 -0.9287 32 1 4.1695 2.9056 -0.9285 33 1 3.1474 2.9119 -3.5610 34 1 5.1758 6.4251 -5.5376 35 1 2.9812 -3.5130 -1.1099 36 1 1.6996 -5.6101 -1.2367 37 1 -1.5505 -3.8842 0.6852 38 1 -0.3789 -1.7297 0.8893 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322394047.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:54 Heat of formation + Delta-G solvation = 63.594578 kcal Electronic energy + Delta-G solvation = -20874.559963 eV Core-core repulsion = 17528.847467 eV Total energy + Delta-G solvation = -3345.712496 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -42.03795 -40.12246 -36.67151 -35.58482 -34.82606 -32.74887 -32.17613 -30.76936 -30.01403 -27.73956 -26.45515 -24.81383 -24.52425 -22.56269 -21.20964 -20.44116 -18.42678 -18.14101 -17.62731 -17.57579 -16.45479 -16.20037 -15.96268 -15.52047 -14.99681 -14.79946 -14.58227 -14.29415 -13.73667 -13.63560 -13.28652 -12.95551 -12.87541 -12.38024 -12.33142 -12.16880 -11.51956 -11.31510 -10.99761 -10.97410 -10.65398 -10.41819 -10.26205 -10.17816 -9.78841 -9.63813 -9.14396 -9.02658 -8.94203 -7.28338 -5.80729 -3.16794 -0.32710 0.00447 2.03577 2.04412 2.35517 2.76524 3.33712 3.36169 3.41898 3.57601 3.85250 3.88467 3.93037 4.22955 4.49280 4.55295 4.70167 4.74619 4.81673 4.94886 5.01417 5.08455 5.16569 5.16768 5.39773 5.48066 5.58671 5.76336 5.86936 6.05876 6.15454 6.19980 6.55722 6.62795 6.64558 6.82945 7.57332 7.94972 8.38270 9.16817 9.89210 10.08547 11.37657 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.027437 B = 0.003123 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.281908 B = 8963.511444 C = 9380.404565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.602 5.602 3 C 0.117 3.883 4 C -0.145 4.145 5 C 0.161 3.839 6 N -0.757 5.757 7 C -0.246 4.246 8 H 0.091 0.909 9 C 0.004 3.996 10 N -0.934 5.934 11 Si 0.886 3.114 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.278 1.278 15 C 0.555 3.445 16 O -0.513 6.513 17 C -0.088 4.088 18 C -0.066 4.066 19 C 0.071 3.929 20 N -0.108 5.108 21 O -0.541 6.541 22 C 0.068 3.932 23 C -0.109 4.109 24 H 0.069 0.931 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.028 0.972 32 H 0.029 0.971 33 H 0.360 0.640 34 H 0.260 0.740 35 H 0.175 0.825 36 H 0.190 0.810 37 H 0.189 0.811 38 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.188 -16.981 12.396 24.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.335 5.335 3 C -0.005 4.005 4 C -0.184 4.184 5 C 0.033 3.967 6 N -0.402 5.402 7 C -0.376 4.376 8 H 0.108 0.892 9 C -0.192 4.192 10 N -0.581 5.581 11 Si 0.716 3.284 12 H -0.211 1.211 13 H -0.216 1.216 14 H -0.204 1.204 15 C 0.342 3.658 16 O -0.388 6.388 17 C -0.099 4.099 18 C -0.085 4.085 19 C -0.074 4.074 20 N 0.214 4.786 21 O -0.598 6.598 22 C -0.078 4.078 23 C -0.128 4.128 24 H 0.087 0.913 25 H 0.102 0.898 26 H 0.102 0.898 27 H 0.104 0.896 28 H 0.110 0.890 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.046 0.954 32 H 0.047 0.953 33 H 0.193 0.807 34 H 0.070 0.930 35 H 0.192 0.808 36 H 0.207 0.793 37 H 0.206 0.794 38 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -11.615 -17.100 12.460 24.136 hybrid contribution -0.573 -0.757 -1.210 1.538 sum -12.188 -17.857 11.250 24.372 Atomic orbital electron populations 1.22559 0.79651 1.04657 1.02192 1.47783 1.07166 1.06229 1.72282 1.21620 0.97953 0.82721 0.98172 1.22134 1.01217 0.99254 0.95769 1.20508 0.96657 0.91730 0.87822 1.42695 1.69785 1.26236 1.01523 1.19064 1.28033 0.96843 0.93636 0.89153 1.24685 1.00382 0.97181 0.96941 1.69702 1.45945 1.22967 1.19532 0.86528 0.78457 0.80218 0.83196 1.21070 1.21625 1.20418 1.17963 0.87077 0.83017 0.77787 1.90874 1.12901 1.86694 1.48365 1.20624 0.94610 0.95631 0.99023 1.21975 1.01459 0.89487 0.95588 1.22694 0.85502 1.00755 0.98496 1.43380 1.07698 1.11340 1.16147 1.97687 1.66208 1.05721 1.90143 1.22678 1.01645 0.85867 0.97560 1.22754 0.93691 0.97980 0.98365 0.91304 0.89806 0.89763 0.89600 0.88977 0.91585 0.91827 0.95398 0.95288 0.80712 0.93007 0.80770 0.79310 0.79436 0.79940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.21 8.80 59.84 0.53 0.74 16 2 N -0.60 -5.00 2.87 -182.64 -0.52 -5.53 16 3 C 0.12 1.20 5.45 -4.04 -0.02 1.18 16 4 C -0.14 -1.98 5.65 -26.73 -0.15 -2.14 16 5 C 0.16 2.92 6.26 -4.04 -0.03 2.89 16 6 N -0.76 -17.81 5.41 -59.91 -0.32 -18.13 16 7 C -0.25 -6.95 10.47 -15.06 -0.16 -7.11 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 9 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 10 N -0.93 -29.26 13.97 55.49 0.78 -28.48 16 11 Si 0.89 21.96 27.74 -169.99 -4.71 17.25 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 14 H -0.28 -6.51 6.52 56.52 0.37 -6.14 16 15 C 0.56 5.44 7.49 -12.27 -0.09 5.35 16 16 O -0.51 -7.08 16.35 5.34 0.09 -6.99 16 17 C -0.09 -0.61 5.53 -104.65 -0.58 -1.19 16 18 C -0.07 -0.43 9.70 -39.04 -0.38 -0.81 16 19 C 0.07 0.53 10.67 -17.57 -0.19 0.34 16 20 N -0.11 -1.11 3.58 -13.30 -0.05 -1.15 16 21 O -0.54 -9.11 20.04 -11.47 -0.23 -9.34 16 22 C 0.07 0.43 10.67 -17.56 -0.19 0.24 16 23 C -0.11 -0.48 7.58 -39.03 -0.30 -0.78 16 24 H 0.07 0.12 7.40 -51.93 -0.38 -0.26 16 25 H 0.08 0.35 8.09 -51.93 -0.42 -0.07 16 26 H 0.08 0.24 4.78 -51.93 -0.25 0.00 16 27 H 0.09 0.70 8.07 -51.93 -0.42 0.28 16 28 H 0.09 1.08 7.36 -51.93 -0.38 0.69 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.36 8.27 5.53 -40.82 -0.23 8.05 16 34 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 35 H 0.17 0.95 7.99 -52.49 -0.42 0.53 16 36 H 0.19 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.19 0.76 8.06 -52.49 -0.42 0.33 16 38 H 0.18 0.24 4.69 -52.49 -0.25 -0.01 16 LS Contribution 323.44 15.07 4.87 4.87 Total: -1.00 -40.64 323.44 -6.62 -47.26 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -4.87 Total: 1.49 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -1.65 Total: -1.26 kcal Atomic # 7 Polarization: -53.17 SS G_CDS: -0.12 Total: -53.29 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: -0.14 Total: -16.33 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.71 Total: 17.25 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -40.64 -6.62 -47.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322394047.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.857 kcal (2) G-P(sol) polarization free energy of solvation -40.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds