Wall clock time and date at job start Tue Mar 31 2020 01:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.46500 * 120.00214 * 2 1 4 4 C 1.53004 * 109.46912 * 270.00069 * 3 2 1 5 5 C 1.53000 * 109.46950 * 179.97438 * 4 3 2 6 6 N 1.46496 * 109.47113 * 180.02562 * 5 4 3 7 7 C 1.36936 * 119.99989 * 180.02562 * 6 5 4 8 8 H 1.08005 * 120.00211 * 359.97438 * 7 6 5 9 9 C 1.38810 * 120.00190 * 179.97438 * 7 6 5 10 10 N 1.31626 * 120.00404 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 120.00072 * 0.02562 * 9 7 6 12 12 H 1.48504 * 109.47408 * 89.99358 * 11 9 7 13 13 H 1.48493 * 109.47492 * 209.99947 * 11 9 7 14 14 H 1.48502 * 109.46712 * 329.99800 * 11 9 7 15 15 C 1.34777 * 119.99613 * 180.02562 * 2 1 3 16 16 O 1.21511 * 119.99473 * 184.78785 * 15 2 1 17 17 C 1.48157 * 120.00295 * 4.78963 * 15 2 1 18 18 C 1.39958 * 120.89630 * 142.11713 * 17 15 2 19 19 C 1.37982 * 119.13784 * 180.02562 * 18 17 15 20 20 N 1.31905 * 120.97680 * 0.02562 * 19 18 17 21 21 C 1.32177 * 121.96869 * 359.97438 * 20 19 18 22 22 O 1.35687 * 119.61899 * 180.28013 * 21 20 19 23 23 C 1.38891 * 120.75516 * 0.02562 * 21 20 19 24 24 H 1.08994 * 109.47017 * 264.80096 * 1 2 3 25 25 H 1.09000 * 109.46549 * 24.79837 * 1 2 3 26 26 H 1.08999 * 109.47028 * 144.79534 * 1 2 3 27 27 H 1.09006 * 109.46979 * 29.99533 * 3 2 1 28 28 H 1.08990 * 109.47021 * 149.99810 * 3 2 1 29 29 H 1.09000 * 109.47452 * 299.99865 * 4 3 2 30 30 H 1.09002 * 109.47128 * 59.99877 * 4 3 2 31 31 H 1.09000 * 109.47042 * 300.00249 * 5 4 3 32 32 H 1.09002 * 109.47197 * 60.00053 * 5 4 3 33 33 H 0.96999 * 120.00545 * 0.02562 * 6 5 4 34 34 H 0.96994 * 120.00038 * 179.97438 * 10 9 7 35 35 H 1.08003 * 120.42956 * 359.97438 * 18 17 15 36 36 H 1.08001 * 119.51144 * 179.97438 * 19 18 17 37 37 H 0.96701 * 114.00576 * 269.72917 * 22 21 20 38 38 H 1.07999 * 120.51985 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 -1.4426 5 6 3.2171 3.0356 -1.4426 6 7 3.4607 3.4588 -2.8237 7 6 4.1338 4.6248 -3.0740 8 1 4.4848 5.2327 -2.2531 9 6 4.3652 5.0256 -4.3827 10 7 5.0117 6.1466 -4.6233 11 14 3.7576 3.9747 -5.8025 12 1 2.3843 4.3966 -6.1785 13 1 4.6637 4.1440 -6.9668 14 1 3.7419 2.5480 -5.3909 15 6 2.1389 -1.1672 -0.0005 16 8 3.3508 -1.1691 0.0873 17 6 1.4020 -2.4480 -0.1082 18 6 1.9173 -3.5130 -0.8560 19 6 1.2003 -4.6894 -0.9322 20 7 0.0429 -4.8204 -0.3131 21 6 -0.4819 -3.8418 0.4039 22 8 -1.6732 -4.0304 1.0256 23 6 0.1746 -2.6246 0.5324 24 1 -0.3633 -0.0931 1.0234 25 1 -0.3632 0.9329 -0.4310 26 1 -0.3633 -0.8397 -0.5924 27 1 1.6085 2.0284 0.5138 28 1 3.1499 1.1383 0.5138 29 1 3.0417 0.9507 -1.9564 30 1 1.5002 1.8407 -1.9564 31 1 2.6277 3.7951 -0.9288 32 1 4.1695 2.9057 -0.9286 33 1 3.1453 2.9132 -3.5611 34 1 5.1736 6.4264 -5.5377 35 1 2.8635 -3.4149 -1.3674 36 1 1.5921 -5.5149 -1.5078 37 1 -2.4396 -3.7821 0.4908 38 1 -0.2575 -1.8277 1.1196 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322460920.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:58 Heat of formation + Delta-G solvation = -10.347293 kcal Electronic energy + Delta-G solvation = -20950.512086 eV Core-core repulsion = 17601.593230 eV Total energy + Delta-G solvation = -3348.918856 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.28399 -39.74734 -37.47033 -36.45444 -35.19169 -33.41878 -32.07116 -30.81883 -30.18788 -27.43119 -26.29823 -24.31458 -23.83423 -22.40480 -21.14328 -20.39909 -18.80987 -17.61693 -17.51519 -17.25256 -16.54965 -16.29967 -15.87271 -15.44292 -14.79215 -14.51974 -14.45598 -13.98000 -13.61884 -13.50155 -13.43659 -12.89872 -12.83505 -12.32270 -12.27211 -12.21967 -12.08092 -11.27282 -10.95834 -10.91686 -10.58886 -10.56025 -10.31012 -10.15194 -9.77872 -9.60327 -9.44148 -8.95091 -8.90551 -7.24386 -5.77466 -3.13196 0.32138 0.48828 2.34317 2.59195 3.10089 3.26800 3.36419 3.39306 3.44213 3.90172 4.20452 4.44239 4.49406 4.58479 4.71500 4.87743 4.90403 5.01035 5.06814 5.17260 5.27030 5.29778 5.48017 5.52128 5.56311 5.69737 5.84352 5.93143 5.94472 6.16045 6.27654 6.69287 6.71713 6.95992 7.00000 7.38888 7.77493 7.98611 8.41659 9.20411 9.92861 10.12634 11.41003 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.027744 B = 0.003186 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.990528 B = 8785.535966 C = 9079.332362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.606 5.606 3 C 0.117 3.883 4 C -0.144 4.144 5 C 0.161 3.839 6 N -0.757 5.757 7 C -0.245 4.245 8 H 0.091 0.909 9 C 0.003 3.997 10 N -0.935 5.935 11 Si 0.885 3.115 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.278 1.278 15 C 0.555 3.445 16 O -0.517 6.517 17 C -0.063 4.063 18 C -0.131 4.131 19 C 0.124 3.876 20 N -0.492 5.492 21 C 0.307 3.693 22 O -0.479 6.479 23 C -0.164 4.164 24 H 0.062 0.938 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.028 0.972 32 H 0.029 0.971 33 H 0.360 0.640 34 H 0.260 0.740 35 H 0.151 0.849 36 H 0.170 0.830 37 H 0.402 0.598 38 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.132 -20.552 10.555 27.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.338 5.338 3 C -0.005 4.005 4 C -0.183 4.183 5 C 0.033 3.967 6 N -0.402 5.402 7 C -0.374 4.374 8 H 0.108 0.892 9 C -0.192 4.192 10 N -0.583 5.583 11 Si 0.716 3.284 12 H -0.211 1.211 13 H -0.216 1.216 14 H -0.204 1.204 15 C 0.342 3.658 16 O -0.392 6.392 17 C -0.074 4.074 18 C -0.151 4.151 19 C -0.032 4.032 20 N -0.211 5.211 21 C 0.128 3.872 22 O -0.287 6.287 23 C -0.186 4.186 24 H 0.081 0.919 25 H 0.100 0.900 26 H 0.091 0.909 27 H 0.102 0.898 28 H 0.109 0.891 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.046 0.954 32 H 0.047 0.953 33 H 0.193 0.807 34 H 0.070 0.930 35 H 0.168 0.832 36 H 0.187 0.813 37 H 0.260 0.740 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -14.515 -21.251 11.092 28.024 hybrid contribution -0.394 0.269 -1.426 1.504 sum -14.909 -20.982 9.666 27.495 Atomic orbital electron populations 1.22209 0.79540 1.04079 1.01619 1.47792 1.07160 1.06175 1.72678 1.21590 0.97943 0.82925 0.98023 1.22130 1.01132 0.99155 0.95884 1.20513 0.96674 0.91781 0.87755 1.42697 1.69710 1.26268 1.01562 1.19075 1.27886 0.96838 0.93644 0.89151 1.24681 1.00434 0.97197 0.96920 1.69704 1.46080 1.22975 1.19493 0.86526 0.78439 0.80264 0.83192 1.21084 1.21639 1.20398 1.18214 0.87070 0.83257 0.77248 1.90841 1.13135 1.86826 1.48425 1.20292 0.94194 0.95221 0.97741 1.22316 1.01374 0.92807 0.98644 1.22561 0.88848 0.96702 0.95124 1.67048 1.13829 1.32659 1.07611 1.19041 0.88700 0.87925 0.91558 1.84817 1.13622 1.88710 1.41503 1.22690 0.95734 0.98475 1.01651 0.91928 0.89992 0.90875 0.89777 0.89132 0.91635 0.91897 0.95410 0.95280 0.80718 0.93037 0.83166 0.81321 0.74028 0.82776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.45 8.87 59.85 0.53 0.98 16 2 N -0.61 -6.46 2.87 -182.57 -0.52 -6.98 16 3 C 0.12 1.41 5.42 -4.04 -0.02 1.39 16 4 C -0.14 -2.17 5.65 -26.73 -0.15 -2.32 16 5 C 0.16 3.08 6.26 -4.04 -0.03 3.06 16 6 N -0.76 -18.40 5.41 -59.91 -0.32 -18.72 16 7 C -0.24 -7.06 10.47 -15.06 -0.16 -7.22 16 8 H 0.09 2.77 8.06 -52.48 -0.42 2.35 16 9 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 10 N -0.93 -29.69 13.97 55.49 0.78 -28.91 16 11 Si 0.89 22.35 27.74 -169.99 -4.71 17.64 16 12 H -0.28 -7.05 7.11 56.52 0.40 -6.64 16 13 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 14 H -0.28 -6.65 6.52 56.52 0.37 -6.28 16 15 C 0.56 6.97 7.41 -12.19 -0.09 6.88 16 16 O -0.52 -8.49 16.48 5.36 0.09 -8.40 16 17 C -0.06 -0.64 5.29 -104.68 -0.55 -1.19 16 18 C -0.13 -1.20 9.74 -39.03 -0.38 -1.58 16 19 C 0.12 1.02 11.17 -17.61 -0.20 0.82 16 20 N -0.49 -4.83 10.36 -13.38 -0.14 -4.96 16 21 C 0.31 2.69 7.74 -17.16 -0.13 2.55 16 22 O -0.48 -3.41 13.56 -18.76 -0.25 -3.66 16 23 C -0.16 -1.33 7.61 -38.84 -0.30 -1.63 16 24 H 0.06 0.30 6.89 -51.93 -0.36 -0.06 16 25 H 0.08 0.49 8.03 -51.93 -0.42 0.08 16 26 H 0.07 0.43 5.83 -51.93 -0.30 0.13 16 27 H 0.08 0.83 8.07 -51.93 -0.42 0.41 16 28 H 0.09 1.22 7.36 -51.93 -0.38 0.84 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.36 8.55 5.53 -40.82 -0.23 8.32 16 34 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 35 H 0.15 1.29 8.06 -52.48 -0.42 0.87 16 36 H 0.17 0.86 8.06 -52.49 -0.42 0.44 16 37 H 0.40 0.77 9.06 45.56 0.41 1.18 16 38 H 0.15 0.93 5.27 -52.49 -0.28 0.66 16 LS Contribution 323.36 15.07 4.87 4.87 Total: -1.00 -37.33 323.36 -5.89 -43.21 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -4.10 Total: 4.17 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -1.57 Total: 1.75 kcal Atomic # 7 Polarization: -59.37 SS G_CDS: -0.21 Total: -59.58 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: -0.17 Total: -12.06 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.71 Total: 17.64 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -37.33 -5.89 -43.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322460920.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.866 kcal (2) G-P(sol) polarization free energy of solvation -37.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds