Wall clock time and date at job start Tue Mar 31 2020 01:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.46500 * 120.00214 * 2 1 4 4 C 1.53004 * 109.46912 * 270.00069 * 3 2 1 5 5 C 1.53000 * 109.46950 * 179.97438 * 4 3 2 6 6 N 1.46496 * 109.47113 * 180.02562 * 5 4 3 7 7 C 1.36936 * 119.99989 * 180.02562 * 6 5 4 8 8 H 1.08005 * 120.00211 * 359.97438 * 7 6 5 9 9 C 1.38810 * 120.00190 * 179.97438 * 7 6 5 10 10 N 1.31626 * 120.00404 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 120.00072 * 0.02562 * 9 7 6 12 12 H 1.48504 * 109.47408 * 89.99358 * 11 9 7 13 13 H 1.48493 * 109.47492 * 209.99947 * 11 9 7 14 14 H 1.48502 * 109.46712 * 329.99800 * 11 9 7 15 15 C 1.34777 * 119.99613 * 180.02562 * 2 1 3 16 16 O 1.21511 * 119.99473 * 184.78785 * 15 2 1 17 17 C 1.48157 * 120.00295 * 4.78963 * 15 2 1 18 18 C 1.39958 * 120.89630 * 142.11713 * 17 15 2 19 19 C 1.37982 * 119.13784 * 180.02562 * 18 17 15 20 20 N 1.31905 * 120.97680 * 0.02562 * 19 18 17 21 21 C 1.32177 * 121.96869 * 359.97438 * 20 19 18 22 22 O 1.35687 * 119.61899 * 180.28013 * 21 20 19 23 23 C 1.38891 * 120.75516 * 0.02562 * 21 20 19 24 24 H 1.08994 * 109.47017 * 264.80096 * 1 2 3 25 25 H 1.09000 * 109.46549 * 24.79837 * 1 2 3 26 26 H 1.08999 * 109.47028 * 144.79534 * 1 2 3 27 27 H 1.09006 * 109.46979 * 29.99533 * 3 2 1 28 28 H 1.08990 * 109.47021 * 149.99810 * 3 2 1 29 29 H 1.09000 * 109.47452 * 299.99865 * 4 3 2 30 30 H 1.09002 * 109.47128 * 59.99877 * 4 3 2 31 31 H 1.09000 * 109.47042 * 300.00249 * 5 4 3 32 32 H 1.09002 * 109.47197 * 60.00053 * 5 4 3 33 33 H 0.96999 * 120.00545 * 0.02562 * 6 5 4 34 34 H 0.96994 * 120.00038 * 179.97438 * 10 9 7 35 35 H 1.08003 * 120.42956 * 359.97438 * 18 17 15 36 36 H 1.08001 * 119.51144 * 179.97438 * 19 18 17 37 37 H 0.96701 * 114.00576 * 269.72917 * 22 21 20 38 38 H 1.07999 * 120.51985 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 -1.4426 5 6 3.2171 3.0356 -1.4426 6 7 3.4607 3.4588 -2.8237 7 6 4.1338 4.6248 -3.0740 8 1 4.4848 5.2327 -2.2531 9 6 4.3652 5.0256 -4.3827 10 7 5.0117 6.1466 -4.6233 11 14 3.7576 3.9747 -5.8025 12 1 2.3843 4.3966 -6.1785 13 1 4.6637 4.1440 -6.9668 14 1 3.7419 2.5480 -5.3909 15 6 2.1389 -1.1672 -0.0005 16 8 3.3508 -1.1691 0.0873 17 6 1.4020 -2.4480 -0.1082 18 6 1.9173 -3.5130 -0.8560 19 6 1.2003 -4.6894 -0.9322 20 7 0.0429 -4.8204 -0.3131 21 6 -0.4819 -3.8418 0.4039 22 8 -1.6732 -4.0304 1.0256 23 6 0.1746 -2.6246 0.5324 24 1 -0.3633 -0.0931 1.0234 25 1 -0.3632 0.9329 -0.4310 26 1 -0.3633 -0.8397 -0.5924 27 1 1.6085 2.0284 0.5138 28 1 3.1499 1.1383 0.5138 29 1 3.0417 0.9507 -1.9564 30 1 1.5002 1.8407 -1.9564 31 1 2.6277 3.7951 -0.9288 32 1 4.1695 2.9057 -0.9286 33 1 3.1453 2.9132 -3.5611 34 1 5.1736 6.4264 -5.5377 35 1 2.8635 -3.4149 -1.3674 36 1 1.5921 -5.5149 -1.5078 37 1 -2.4396 -3.7821 0.4908 38 1 -0.2575 -1.8277 1.1196 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322460920.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:57 Heat of formation + Delta-G solvation = -41.602699 kcal Electronic energy + Delta-G solvation = -20951.867422 eV Core-core repulsion = 17601.593230 eV Total energy + Delta-G solvation = -3350.274192 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.00309 -40.56398 -38.06805 -37.65822 -36.65470 -34.54949 -33.63781 -31.96092 -31.29537 -28.21131 -27.53654 -25.43223 -24.58525 -23.83489 -22.68405 -21.18877 -19.68758 -19.50120 -18.31477 -17.94854 -17.29498 -17.09400 -16.72527 -16.52768 -16.15442 -15.97314 -15.62563 -15.16874 -14.86841 -14.54456 -14.28685 -14.16245 -13.82180 -13.67648 -13.33330 -12.87704 -12.82462 -12.81785 -12.73985 -12.50674 -12.08146 -11.86721 -11.82854 -11.50118 -11.02366 -11.00139 -10.48524 -10.05178 -9.82714 -9.34011 -8.05759 -5.40201 -0.38651 -0.10804 1.35298 1.39455 1.46604 1.47907 1.78951 2.45995 2.51917 2.63679 3.17819 3.25373 3.56884 3.65727 3.82800 3.87108 3.98690 4.13444 4.24597 4.32800 4.35933 4.48557 4.53782 4.59945 4.66229 4.71945 4.85648 4.87227 4.93492 5.20617 5.24639 5.36671 5.41960 5.72271 6.16091 6.18438 6.56495 6.82383 6.88079 7.04328 7.80201 7.99104 9.15787 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.027744 B = 0.003186 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.990528 B = 8785.535966 C = 9079.332362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.601 5.601 3 C 0.123 3.877 4 C -0.127 4.127 5 C 0.156 3.844 6 N -0.761 5.761 7 C -0.240 4.240 8 H 0.057 0.943 9 C -0.065 4.065 10 N -0.984 5.984 11 Si 0.959 3.041 12 H -0.272 1.272 13 H -0.294 1.294 14 H -0.257 1.257 15 C 0.551 3.449 16 O -0.569 6.569 17 C -0.076 4.076 18 C -0.141 4.141 19 C 0.128 3.872 20 N -0.514 5.514 21 C 0.306 3.694 22 O -0.486 6.486 23 C -0.153 4.153 24 H 0.088 0.912 25 H 0.094 0.906 26 H 0.083 0.917 27 H 0.115 0.885 28 H 0.071 0.929 29 H 0.045 0.955 30 H 0.079 0.921 31 H 0.040 0.960 32 H 0.017 0.983 33 H 0.365 0.635 34 H 0.259 0.741 35 H 0.148 0.852 36 H 0.196 0.804 37 H 0.424 0.576 38 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.909 -22.360 10.619 30.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.332 5.332 3 C 0.000 4.000 4 C -0.166 4.166 5 C 0.029 3.971 6 N -0.407 5.407 7 C -0.371 4.371 8 H 0.075 0.925 9 C -0.257 4.257 10 N -0.634 5.634 11 Si 0.786 3.214 12 H -0.197 1.197 13 H -0.221 1.221 14 H -0.182 1.182 15 C 0.339 3.661 16 O -0.448 6.448 17 C -0.088 4.088 18 C -0.162 4.162 19 C -0.028 4.028 20 N -0.234 5.234 21 C 0.127 3.873 22 O -0.297 6.297 23 C -0.174 4.174 24 H 0.107 0.893 25 H 0.112 0.888 26 H 0.102 0.898 27 H 0.133 0.867 28 H 0.089 0.911 29 H 0.064 0.936 30 H 0.097 0.903 31 H 0.058 0.942 32 H 0.036 0.964 33 H 0.198 0.802 34 H 0.068 0.932 35 H 0.166 0.834 36 H 0.213 0.787 37 H 0.286 0.714 38 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -17.377 -23.082 11.189 30.983 hybrid contribution 0.431 0.856 -1.331 1.640 sum -16.947 -22.227 9.857 29.638 Atomic orbital electron populations 1.22541 0.76702 1.05276 1.03678 1.47862 1.08847 1.05014 1.71443 1.21441 0.98223 0.84435 0.95915 1.21940 1.00691 0.95993 0.98003 1.20690 0.96947 0.94281 0.85132 1.42738 1.69193 1.24936 1.03855 1.19070 1.27339 0.97790 0.92880 0.92484 1.25565 1.01221 0.98798 1.00081 1.69889 1.48115 1.25286 1.20110 0.85350 0.78009 0.79292 0.78769 1.19741 1.22075 1.18166 1.18639 0.86642 0.84454 0.76371 1.90811 1.15368 1.87632 1.50978 1.20187 0.95066 0.94326 0.99173 1.22418 1.01591 0.93184 0.98976 1.22939 0.88200 0.96956 0.94694 1.67119 1.14496 1.33375 1.08376 1.19180 0.89245 0.87823 0.91054 1.84773 1.13974 1.88790 1.42158 1.22785 0.94667 0.98922 1.01056 0.89329 0.88759 0.89849 0.86726 0.91061 0.93636 0.90275 0.94223 0.96443 0.80170 0.93200 0.83375 0.78705 0.71441 0.80602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.56 8.87 127.77 1.13 1.70 16 2 N -0.60 -11.52 2.87 -849.83 -2.44 -13.96 16 3 C 0.12 2.74 5.42 86.38 0.47 3.21 16 4 C -0.13 -3.63 5.65 30.60 0.17 -3.46 16 5 C 0.16 5.88 6.26 86.38 0.54 6.42 16 6 N -0.76 -36.46 5.41 -343.46 -1.86 -38.31 16 7 C -0.24 -14.03 10.47 84.03 0.88 -13.15 16 8 H 0.06 3.64 8.06 -2.91 -0.02 3.61 16 9 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 10 N -0.98 -63.85 13.97 21.65 0.30 -63.55 16 11 Si 0.96 45.91 27.74 68.60 1.90 47.81 16 12 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 13 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 14 H -0.26 -11.27 6.52 99.48 0.65 -10.62 16 15 C 0.55 13.37 7.41 86.88 0.64 14.02 16 16 O -0.57 -19.04 16.48 -3.75 -0.06 -19.10 16 17 C -0.08 -1.44 5.29 -19.90 -0.11 -1.54 16 18 C -0.14 -2.46 9.74 22.63 0.22 -2.24 16 19 C 0.13 1.89 11.17 84.62 0.94 2.83 16 20 N -0.51 -9.05 10.36 -309.13 -3.20 -12.25 16 21 C 0.31 4.61 7.74 84.80 0.66 5.27 16 22 O -0.49 -5.54 13.56 -90.06 -1.22 -6.76 16 23 C -0.15 -2.10 7.61 22.75 0.17 -1.92 16 24 H 0.09 0.43 6.89 -2.39 -0.02 0.42 16 25 H 0.09 0.73 8.03 -2.39 -0.02 0.71 16 26 H 0.08 0.67 5.83 -2.39 -0.01 0.65 16 27 H 0.11 1.88 8.07 -2.38 -0.02 1.86 16 28 H 0.07 1.90 7.36 -2.39 -0.02 1.89 16 29 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.37 16.64 5.53 -92.71 -0.51 16.12 16 34 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 35 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 36 H 0.20 1.60 8.06 -2.91 -0.02 1.57 16 37 H 0.42 0.29 9.06 -74.06 -0.67 -0.38 16 38 H 0.18 1.49 5.27 -2.91 -0.02 1.47 16 Total: -1.00 -82.56 323.36 -0.53 -83.08 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -0.14 Total: 15.36 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: 6.20 Total: 7.69 kcal Atomic # 7 Polarization: -120.88 SS G_CDS: -7.20 Total: -128.08 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -1.28 Total: -25.86 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 1.90 Total: 47.81 kcal Total: -82.56 -0.53 -83.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322460920.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.479 kcal (2) G-P(sol) polarization free energy of solvation -82.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds