Wall clock time and date at job start Tue Mar 31 2020 01:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36345 * 125.63310 * 2 1 4 4 C 1.34848 * 108.21855 * 180.02562 * 3 2 1 5 5 C 1.40895 * 107.41714 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.29128 * 180.02562 * 5 4 3 7 7 N 1.46507 * 109.47026 * 89.97965 * 6 5 4 8 8 C 1.34775 * 119.99878 * 180.02562 * 7 6 5 9 9 O 1.21348 * 120.00274 * 359.97438 * 8 7 6 10 10 C 1.49449 * 119.99794 * 179.97438 * 8 7 6 11 11 O 1.21348 * 119.99932 * 0.02562 * 10 8 7 12 12 N 1.34775 * 120.00221 * 179.97438 * 10 8 7 13 13 C 1.46496 * 120.00214 * 179.97438 * 12 10 8 14 14 C 1.53004 * 109.46916 * 180.02562 * 13 12 10 15 15 C 1.50702 * 109.46901 * 180.02562 * 14 13 12 16 16 H 1.07997 * 120.00200 * 0.02562 * 15 14 13 17 17 C 1.37882 * 119.99977 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00018 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99987 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47362 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47213 * 119.99716 * 19 17 15 22 22 H 1.48504 * 109.46806 * 239.99985 * 19 17 15 23 23 C 1.34844 * 107.41841 * 0.02562 * 5 4 3 24 24 H 1.08997 * 109.47501 * 269.97463 * 1 2 3 25 25 H 1.09004 * 109.47331 * 29.98008 * 1 2 3 26 26 H 1.09002 * 109.46732 * 149.97633 * 1 2 3 27 27 H 1.08001 * 125.88962 * 0.05572 * 3 2 1 28 28 H 1.07999 * 126.29387 * 180.26704 * 4 3 2 29 29 H 1.08991 * 109.47528 * 209.97807 * 6 5 4 30 30 H 1.09004 * 109.47059 * 329.98194 * 6 5 4 31 31 H 0.97001 * 119.99756 * 359.97438 * 7 6 5 32 32 H 0.97009 * 119.99557 * 0.02562 * 12 10 8 33 33 H 1.08994 * 109.47267 * 300.00426 * 13 12 10 34 34 H 1.09004 * 109.46786 * 60.00948 * 13 12 10 35 35 H 1.09002 * 109.47225 * 299.99787 * 14 13 12 36 36 H 1.09000 * 109.47490 * 60.00343 * 14 13 12 37 37 H 0.96997 * 120.00239 * 179.97438 * 18 17 15 38 38 H 1.07994 * 125.89572 * 180.02562 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2593 1.1082 0.0000 4 6 3.5460 0.7046 -0.0006 5 6 3.5461 -0.7044 -0.0003 6 6 4.7608 -1.5963 -0.0003 7 7 5.1547 -1.8847 1.3811 8 6 6.2232 -2.6684 1.6274 9 8 6.8586 -3.1355 0.7051 10 6 6.6254 -2.9621 3.0365 11 8 5.9897 -2.4953 3.9587 12 7 7.6935 -3.7462 3.2829 13 6 8.0881 -4.0337 4.6641 14 6 9.3216 -4.9389 4.6642 15 6 9.7272 -5.2351 6.0851 16 1 9.1615 -4.8197 6.9059 17 6 10.8205 -6.0365 6.3372 18 7 11.5090 -6.5429 5.3377 19 14 11.3227 -6.4043 8.0984 20 1 10.3917 -5.7207 9.0317 21 1 11.2712 -7.8699 8.3321 22 1 12.7050 -5.9141 8.3315 23 6 2.2595 -1.1081 -0.0002 24 1 -0.3634 -0.0005 1.0276 25 1 -0.3634 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.9171 2.1325 0.0009 28 1 4.4165 1.3438 0.0033 29 1 4.5268 -2.5289 -0.5135 30 1 5.5803 -1.0941 -0.5145 31 1 4.6470 -1.5109 2.1183 32 1 8.2014 -4.1196 2.5456 33 1 8.3224 -3.1007 5.1767 34 1 7.2688 -4.5354 5.1791 35 1 9.0876 -5.8719 4.1516 36 1 10.1408 -4.4369 4.1494 37 1 12.2784 -7.1063 5.5150 38 1 1.9173 -2.1324 0.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323559489.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:45 Heat of formation + Delta-G solvation = -27.941642 kcal Electronic energy + Delta-G solvation = -20201.479394 eV Core-core repulsion = 16851.797590 eV Total energy + Delta-G solvation = -3349.681804 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.53145 -40.20190 -38.16103 -35.56869 -34.78549 -33.02233 -32.73207 -29.86137 -29.65994 -27.89734 -25.92354 -24.84236 -22.95385 -20.96447 -20.68242 -20.22805 -19.83581 -18.30080 -17.12617 -16.72184 -16.20710 -15.74437 -15.61738 -15.04941 -14.72542 -14.52225 -14.42188 -14.25827 -13.62818 -13.33218 -13.19639 -13.06846 -12.72354 -12.69457 -12.30252 -12.13981 -11.85443 -11.40452 -11.18391 -11.04971 -10.62401 -10.36265 -9.75494 -9.41690 -9.18781 -9.17084 -8.83399 -8.62898 -8.46302 -8.38468 -6.07464 -4.10823 1.74201 1.85679 2.38739 2.58820 3.02753 3.29895 3.37445 3.42282 3.55193 4.13200 4.30272 4.43614 4.66766 4.68008 4.79836 4.86346 4.93100 4.96200 5.11560 5.29395 5.49285 5.62796 5.81667 6.12235 6.24031 6.28522 6.29259 6.63207 6.66556 6.76057 6.85407 7.00497 7.23729 7.52754 7.62199 7.78418 7.90676 8.05176 8.26657 8.42605 8.95133 9.53877 11.04085 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.046797 B = 0.002393 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.185874 B =11696.702146 C =12004.515966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.452 5.452 3 C -0.019 4.019 4 C -0.180 4.180 5 C -0.191 4.191 6 C 0.194 3.806 7 N -0.699 5.699 8 C 0.506 3.494 9 O -0.524 6.524 10 C 0.497 3.503 11 O -0.535 6.535 12 N -0.687 5.687 13 C 0.119 3.881 14 C 0.010 3.990 15 C -0.522 4.522 16 H 0.061 0.939 17 C 0.058 3.942 18 N -0.892 5.892 19 Si 0.898 3.102 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.283 1.283 23 C 0.011 3.989 24 H 0.074 0.926 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.162 0.838 28 H 0.138 0.862 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.413 0.587 32 H 0.410 0.590 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.025 0.975 36 H 0.025 0.975 37 H 0.262 0.738 38 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.711 13.722 -13.272 28.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.128 5.128 3 C -0.148 4.148 4 C -0.205 4.205 5 C -0.199 4.199 6 C 0.071 3.929 7 N -0.353 5.353 8 C 0.286 3.714 9 O -0.400 6.400 10 C 0.277 3.723 11 O -0.413 6.413 12 N -0.338 5.338 13 C -0.003 4.003 14 C -0.027 4.027 15 C -0.560 4.560 16 H 0.079 0.921 17 C -0.144 4.144 18 N -0.531 5.531 19 Si 0.725 3.275 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.121 4.121 24 H 0.092 0.908 25 H 0.102 0.898 26 H 0.102 0.898 27 H 0.180 0.820 28 H 0.156 0.844 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.249 0.751 32 H 0.246 0.754 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.043 0.957 36 H 0.044 0.956 37 H 0.072 0.928 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -21.930 13.604 -13.310 29.038 hybrid contribution 0.278 -0.207 0.894 0.958 sum -21.652 13.397 -12.417 28.328 Atomic orbital electron populations 1.22043 0.77116 1.04349 1.03397 1.44006 1.06287 1.06202 1.56265 1.21840 0.90396 0.91518 1.11021 1.20873 0.96179 0.94310 1.09116 1.19390 0.93135 0.94232 1.13097 1.19567 0.93586 0.97504 0.82243 1.45947 1.29881 1.49788 1.09690 1.20437 0.81257 0.79608 0.90053 1.90750 1.52763 1.50643 1.45842 1.20037 0.82472 0.80965 0.88867 1.90723 1.53387 1.51623 1.45549 1.46223 1.28288 1.47533 1.11775 1.21913 0.99392 1.00290 0.78684 1.19366 0.90780 0.94222 0.98362 1.21060 1.12673 1.30608 0.91703 0.92123 1.25011 0.96263 0.95675 0.97425 1.69967 1.18963 1.33408 1.30734 0.86444 0.78438 0.78041 0.84548 1.19596 1.20946 1.20944 1.21749 0.90003 0.91633 1.08704 0.90787 0.89845 0.89803 0.82046 0.84398 0.90799 0.90478 0.75128 0.75396 0.91927 0.91939 0.95655 0.95633 0.92850 0.81878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.24 11.12 59.85 0.67 0.91 16 2 N -0.45 -3.22 3.15 -124.53 -0.39 -3.61 16 3 C -0.02 -0.14 11.43 -16.75 -0.19 -0.34 16 4 C -0.18 -1.66 10.81 -39.78 -0.43 -2.09 16 5 C -0.19 -1.85 5.50 -104.82 -0.58 -2.43 16 6 C 0.19 2.10 6.17 -5.19 -0.03 2.06 16 7 N -0.70 -8.91 5.54 -61.91 -0.34 -9.25 16 8 C 0.51 8.01 7.89 -11.59 -0.09 7.92 16 9 O -0.52 -9.26 16.48 5.50 0.09 -9.17 16 10 C 0.50 8.95 7.89 -11.59 -0.09 8.85 16 11 O -0.53 -10.56 16.48 5.50 0.09 -10.47 16 12 N -0.69 -12.97 5.55 -60.73 -0.34 -13.31 16 13 C 0.12 2.55 5.61 -4.04 -0.02 2.52 16 14 C 0.01 0.26 5.09 -27.88 -0.14 0.11 16 15 C -0.52 -14.51 9.11 -34.44 -0.31 -14.82 16 16 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -26.34 13.29 55.43 0.74 -25.61 16 19 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 C 0.01 0.09 11.35 -16.75 -0.19 -0.10 16 24 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 25 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 26 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 27 H 0.16 0.81 8.06 -52.49 -0.42 0.39 16 28 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.41 5.07 7.94 -40.82 -0.32 4.74 16 32 H 0.41 7.39 7.95 -40.82 -0.32 7.06 16 33 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 38 H 0.16 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 338.15 15.07 5.10 5.10 Total: -1.00 -33.27 338.15 -6.86 -40.13 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -5.26 Total: 5.59 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: -1.51 Total: 4.15 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: -0.34 Total: -51.77 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: 0.18 Total: -19.63 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.27 -6.86 -40.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323559489.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.186 kcal (2) G-P(sol) polarization free energy of solvation -33.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds