Wall clock time and date at job start Tue Mar 31 2020 01:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36345 * 125.63310 * 2 1 4 4 C 1.34848 * 108.21855 * 180.02562 * 3 2 1 5 5 C 1.40895 * 107.41714 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.29128 * 180.02562 * 5 4 3 7 7 N 1.46507 * 109.47026 * 89.97965 * 6 5 4 8 8 C 1.34775 * 119.99878 * 180.02562 * 7 6 5 9 9 O 1.21348 * 120.00274 * 359.97438 * 8 7 6 10 10 C 1.49449 * 119.99794 * 179.97438 * 8 7 6 11 11 O 1.21348 * 119.99932 * 0.02562 * 10 8 7 12 12 N 1.34775 * 120.00221 * 179.97438 * 10 8 7 13 13 C 1.46496 * 120.00214 * 179.97438 * 12 10 8 14 14 C 1.53004 * 109.46916 * 180.02562 * 13 12 10 15 15 C 1.50702 * 109.46901 * 180.02562 * 14 13 12 16 16 H 1.07997 * 120.00200 * 0.02562 * 15 14 13 17 17 C 1.37882 * 119.99977 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00018 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99987 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47362 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47213 * 119.99716 * 19 17 15 22 22 H 1.48504 * 109.46806 * 239.99985 * 19 17 15 23 23 C 1.34844 * 107.41841 * 0.02562 * 5 4 3 24 24 H 1.08997 * 109.47501 * 269.97463 * 1 2 3 25 25 H 1.09004 * 109.47331 * 29.98008 * 1 2 3 26 26 H 1.09002 * 109.46732 * 149.97633 * 1 2 3 27 27 H 1.08001 * 125.88962 * 0.05572 * 3 2 1 28 28 H 1.07999 * 126.29387 * 180.26704 * 4 3 2 29 29 H 1.08991 * 109.47528 * 209.97807 * 6 5 4 30 30 H 1.09004 * 109.47059 * 329.98194 * 6 5 4 31 31 H 0.97001 * 119.99756 * 359.97438 * 7 6 5 32 32 H 0.97009 * 119.99557 * 0.02562 * 12 10 8 33 33 H 1.08994 * 109.47267 * 300.00426 * 13 12 10 34 34 H 1.09004 * 109.46786 * 60.00948 * 13 12 10 35 35 H 1.09002 * 109.47225 * 299.99787 * 14 13 12 36 36 H 1.09000 * 109.47490 * 60.00343 * 14 13 12 37 37 H 0.96997 * 120.00239 * 179.97438 * 18 17 15 38 38 H 1.07994 * 125.89572 * 180.02562 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2593 1.1082 0.0000 4 6 3.5460 0.7046 -0.0006 5 6 3.5461 -0.7044 -0.0003 6 6 4.7608 -1.5963 -0.0003 7 7 5.1547 -1.8847 1.3811 8 6 6.2232 -2.6684 1.6274 9 8 6.8586 -3.1355 0.7051 10 6 6.6254 -2.9621 3.0365 11 8 5.9897 -2.4953 3.9587 12 7 7.6935 -3.7462 3.2829 13 6 8.0881 -4.0337 4.6641 14 6 9.3216 -4.9389 4.6642 15 6 9.7272 -5.2351 6.0851 16 1 9.1615 -4.8197 6.9059 17 6 10.8205 -6.0365 6.3372 18 7 11.5090 -6.5429 5.3377 19 14 11.3227 -6.4043 8.0984 20 1 10.3917 -5.7207 9.0317 21 1 11.2712 -7.8699 8.3321 22 1 12.7050 -5.9141 8.3315 23 6 2.2595 -1.1081 -0.0002 24 1 -0.3634 -0.0005 1.0276 25 1 -0.3634 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.9171 2.1325 0.0009 28 1 4.4165 1.3438 0.0033 29 1 4.5268 -2.5289 -0.5135 30 1 5.5803 -1.0941 -0.5145 31 1 4.6470 -1.5109 2.1183 32 1 8.2014 -4.1196 2.5456 33 1 8.3224 -3.1007 5.1767 34 1 7.2688 -4.5354 5.1791 35 1 9.0876 -5.8719 4.1516 36 1 10.1408 -4.4369 4.1494 37 1 12.2784 -7.1063 5.5150 38 1 1.9173 -2.1324 0.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323559489.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:44 Heat of formation + Delta-G solvation = -51.457154 kcal Electronic energy + Delta-G solvation = -20202.499103 eV Core-core repulsion = 16851.797590 eV Total energy + Delta-G solvation = -3350.701513 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.14926 -41.54991 -39.57172 -36.96876 -36.15419 -34.81500 -33.58955 -31.68150 -30.48723 -28.59101 -27.33112 -26.03523 -24.37509 -22.77680 -21.45358 -21.24538 -20.73588 -19.50742 -18.57176 -17.84643 -17.73915 -17.12415 -16.54861 -16.48432 -16.03924 -15.91299 -15.79961 -14.92611 -14.82978 -14.72866 -14.30808 -14.21563 -13.75305 -13.48330 -13.24535 -13.11188 -12.95647 -12.80495 -12.76193 -12.61522 -12.50352 -12.28567 -11.67904 -11.41131 -10.73146 -10.61637 -10.28812 -10.16931 -9.48063 -9.09022 -8.22857 -6.33992 0.36130 1.11440 1.42977 1.43212 1.49043 1.57277 2.02019 2.13755 2.16044 2.41804 2.87668 3.11953 3.51117 3.95407 4.12891 4.20028 4.34484 4.40225 4.44730 4.46239 4.49040 4.71743 4.75982 4.82144 4.86110 5.10063 5.16871 5.21972 5.43540 5.47569 5.55866 5.76654 5.96487 6.01354 6.13801 6.25076 6.40777 6.50073 6.74160 6.81184 6.96537 7.35415 8.89420 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.046797 B = 0.002393 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.185874 B =11696.702146 C =12004.515966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.452 5.452 3 C -0.017 4.017 4 C -0.207 4.207 5 C -0.213 4.213 6 C 0.197 3.803 7 N -0.680 5.680 8 C 0.512 3.488 9 O -0.545 6.545 10 C 0.500 3.500 11 O -0.551 6.551 12 N -0.689 5.689 13 C 0.138 3.862 14 C 0.018 3.982 15 C -0.543 4.543 16 H 0.065 0.935 17 C 0.003 3.997 18 N -0.928 5.928 19 Si 0.969 3.031 20 H -0.262 1.262 21 H -0.278 1.278 22 H -0.278 1.278 23 C 0.008 3.992 24 H 0.081 0.919 25 H 0.101 0.899 26 H 0.096 0.904 27 H 0.187 0.813 28 H 0.137 0.863 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.416 0.584 32 H 0.415 0.585 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.008 0.992 36 H 0.008 0.992 37 H 0.265 0.735 38 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.507 14.491 -12.942 30.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.126 5.126 3 C -0.146 4.146 4 C -0.231 4.231 5 C -0.220 4.220 6 C 0.074 3.926 7 N -0.333 5.333 8 C 0.292 3.708 9 O -0.423 6.423 10 C 0.281 3.719 11 O -0.430 6.430 12 N -0.340 5.340 13 C 0.015 3.985 14 C -0.020 4.020 15 C -0.582 4.582 16 H 0.083 0.917 17 C -0.196 4.196 18 N -0.568 5.568 19 Si 0.794 3.206 20 H -0.186 1.186 21 H -0.203 1.203 22 H -0.204 1.204 23 C -0.125 4.125 24 H 0.099 0.901 25 H 0.119 0.881 26 H 0.115 0.885 27 H 0.204 0.796 28 H 0.154 0.846 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.253 0.747 32 H 0.251 0.749 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.026 0.974 36 H 0.026 0.974 37 H 0.074 0.926 38 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -23.781 14.405 -12.996 30.691 hybrid contribution 0.734 -0.383 0.730 1.104 sum -23.047 14.022 -12.266 29.635 Atomic orbital electron populations 1.22324 0.74807 1.05956 1.04380 1.44301 1.07740 1.05621 1.54946 1.22245 0.90027 0.92781 1.09568 1.21041 0.97178 0.94309 1.10600 1.19343 0.93216 0.94360 1.15101 1.19637 0.94188 0.98023 0.80708 1.45997 1.28360 1.47994 1.10935 1.19963 0.82010 0.80264 0.88519 1.90749 1.53753 1.51937 1.45821 1.20382 0.81639 0.80022 0.89855 1.90710 1.53761 1.52080 1.46409 1.46069 1.28941 1.48125 1.10846 1.21478 0.97651 0.99251 0.80123 1.19188 0.91767 0.93948 0.97058 1.21479 1.13028 1.30762 0.92900 0.91709 1.25941 0.96251 0.95419 1.01954 1.70083 1.19528 1.34091 1.33075 0.85333 0.78173 0.77991 0.79145 1.18611 1.20347 1.20387 1.22025 0.89840 0.92762 1.07843 0.90055 0.88086 0.88510 0.79558 0.84555 0.90322 0.90905 0.74680 0.74906 0.92093 0.92016 0.97359 0.97395 0.92572 0.80303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.26 11.12 127.77 1.42 1.68 16 2 N -0.45 -5.41 3.15 -547.90 -1.72 -7.14 16 3 C -0.02 -0.22 11.43 83.21 0.95 0.73 16 4 C -0.21 -3.63 10.81 22.14 0.24 -3.40 16 5 C -0.21 -3.92 5.50 -19.99 -0.11 -4.03 16 6 C 0.20 4.13 6.17 85.63 0.53 4.66 16 7 N -0.68 -16.87 5.54 -468.14 -2.59 -19.46 16 8 C 0.51 16.02 7.89 87.27 0.69 16.70 16 9 O -0.54 -19.12 16.48 -3.24 -0.05 -19.18 16 10 C 0.50 17.86 7.89 87.27 0.69 18.55 16 11 O -0.55 -21.42 16.48 -3.24 -0.05 -21.47 16 12 N -0.69 -26.11 5.55 -464.42 -2.58 -28.69 16 13 C 0.14 5.93 5.61 86.38 0.48 6.41 16 14 C 0.02 0.92 5.09 29.85 0.15 1.07 16 15 C -0.54 -30.37 9.11 25.60 0.23 -30.13 16 16 H 0.06 3.49 7.74 -2.91 -0.02 3.46 16 17 C 0.00 0.17 5.46 84.66 0.46 0.63 16 18 N -0.93 -55.35 13.29 21.45 0.28 -55.06 16 19 Si 0.97 43.81 29.54 68.60 2.03 45.83 16 20 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 21 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 22 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 23 C 0.01 0.12 11.35 83.21 0.94 1.07 16 24 H 0.08 0.24 8.14 -2.39 -0.02 0.22 16 25 H 0.10 0.06 8.14 -2.38 -0.02 0.04 16 26 H 0.10 0.15 8.14 -2.39 -0.02 0.13 16 27 H 0.19 1.38 8.06 -2.91 -0.02 1.36 16 28 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 29 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 31 H 0.42 9.86 7.94 -92.71 -0.74 9.13 16 32 H 0.41 15.14 7.95 -92.70 -0.74 14.40 16 33 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 34 H 0.06 2.67 8.14 -2.38 -0.02 2.65 16 35 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 38 H 0.18 1.95 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -70.33 338.15 1.60 -68.72 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: -0.39 Total: 22.51 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: 6.68 Total: 13.94 kcal Atomic # 7 Polarization: -103.74 SS G_CDS: -6.61 Total: -110.35 kcal Atomic # 8 Polarization: -40.54 SS G_CDS: -0.11 Total: -40.65 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Total: -70.33 1.60 -68.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323559489.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.267 kcal (2) G-P(sol) polarization free energy of solvation -70.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds