Wall clock time and date at job start Tue Mar 31 2020 01:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35944 * 119.61278 * 2 1 4 4 C 1.35268 * 120.82362 * 180.02562 * 3 2 1 5 5 C 1.40196 * 120.03500 * 359.74078 * 4 3 2 6 6 C 1.36818 * 119.23535 * 0.53696 * 5 4 3 7 7 N 1.40147 * 120.40203 * 179.74457 * 6 5 4 8 8 C 1.34785 * 119.99671 * 239.56723 * 7 6 5 9 9 O 1.21302 * 119.99749 * 355.28848 * 8 7 6 10 10 C 1.50694 * 120.00023 * 175.28511 * 8 7 6 11 11 H 1.09006 * 109.47009 * 40.00426 * 10 8 7 12 12 N 1.46900 * 109.47089 * 159.99879 * 10 8 7 13 13 C 1.52995 * 109.47725 * 279.99978 * 10 8 7 14 14 C 1.52994 * 109.47679 * 175.00128 * 13 10 8 15 15 C 1.50698 * 109.47442 * 180.02562 * 14 13 10 16 16 H 1.08003 * 119.99548 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00239 * 179.97438 * 15 14 13 18 18 N 1.31523 * 119.99709 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00368 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47099 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47419 * 119.99772 * 19 17 15 22 22 H 1.48502 * 109.47102 * 240.00397 * 19 17 15 23 23 C 1.34671 * 119.61222 * 180.02562 * 2 1 3 24 24 O 1.22059 * 120.03270 * 359.94592 * 23 2 1 25 25 H 1.09001 * 109.46587 * 269.96535 * 1 2 3 26 26 H 1.08995 * 109.47389 * 29.97336 * 1 2 3 27 27 H 1.09007 * 109.47163 * 149.97725 * 1 2 3 28 28 H 1.07998 * 119.58375 * 0.05471 * 3 2 1 29 29 H 1.08001 * 119.97831 * 180.02562 * 4 3 2 30 30 H 1.07997 * 120.38033 * 180.27535 * 5 4 3 31 31 H 0.96994 * 120.00609 * 59.55938 * 7 6 5 32 32 H 1.00897 * 110.99947 * 59.99671 * 12 10 8 33 33 H 1.00895 * 111.00324 * 183.95435 * 12 10 8 34 34 H 1.09008 * 109.46791 * 54.99862 * 13 10 8 35 35 H 1.09004 * 109.46919 * 295.00699 * 13 10 8 36 36 H 1.08998 * 109.46774 * 59.99718 * 14 13 10 37 37 H 1.09008 * 109.46710 * 300.00094 * 14 13 10 38 38 H 0.97000 * 119.99634 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1368 1.1819 0.0000 4 6 3.4892 1.2105 -0.0005 5 6 4.2164 0.0119 0.0044 6 6 3.5423 -1.1787 -0.0014 7 7 4.2448 -2.3914 -0.0021 8 6 4.0747 -3.2681 -1.0117 9 8 3.2515 -3.0470 -1.8747 10 6 4.9074 -4.5229 -1.0682 11 1 5.0168 -4.9319 -0.0638 12 7 4.2454 -5.5114 -1.9300 13 6 6.2885 -4.1933 -1.6379 14 6 7.1748 -5.4391 -1.5798 15 6 8.5354 -5.1143 -2.1404 16 1 8.7469 -4.1186 -2.5016 17 6 9.5105 -6.0877 -2.1912 18 7 9.2532 -7.2997 -1.7499 19 14 11.1967 -5.6853 -2.8867 20 1 11.2299 -4.2632 -3.3131 21 1 12.2296 -5.9143 -1.8447 22 1 11.4711 -6.5586 -4.0561 23 6 2.1305 -1.1708 -0.0005 24 8 1.5137 -2.2241 0.0000 25 1 -0.3632 -0.0006 1.0277 26 1 -0.3634 0.8902 -0.5134 27 1 -0.3634 -0.8898 -0.5142 28 1 1.5837 2.1095 0.0009 29 1 4.0089 2.1572 -0.0001 30 1 5.2962 0.0282 0.0085 31 1 4.8533 -2.5999 0.7238 32 1 4.1321 -5.1557 -2.8674 33 1 4.7509 -6.3845 -1.9332 34 1 6.7433 -3.3961 -1.0499 35 1 6.1863 -3.8681 -2.6733 36 1 6.7200 -6.2362 -2.1678 37 1 7.2770 -5.7642 -0.5444 38 1 9.9391 -7.9847 -1.7860 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325739806.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:42 Heat of formation + Delta-G solvation = -38.882679 kcal Electronic energy + Delta-G solvation = -21439.130557 eV Core-core repulsion = 18088.974314 eV Total energy + Delta-G solvation = -3350.156243 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.52613 -39.40310 -36.92533 -35.96260 -35.15188 -33.11444 -32.80234 -29.85643 -29.40327 -27.86885 -26.54450 -24.39000 -23.01573 -22.84947 -20.77001 -19.84286 -18.03675 -17.70845 -17.17609 -16.84709 -16.21357 -15.95891 -15.51384 -14.78666 -14.58617 -14.40814 -14.20945 -14.01505 -13.33377 -13.12565 -13.07334 -12.81694 -12.66467 -12.39511 -12.14638 -11.90381 -11.63938 -11.06653 -10.91240 -10.66536 -10.53617 -10.08587 -9.96313 -9.86941 -9.25873 -9.17749 -9.16750 -8.42627 -8.11144 -7.83581 -6.06967 -4.10004 0.61739 1.77603 2.37983 3.04709 3.27079 3.31180 3.35104 3.38939 3.56065 4.34438 4.40517 4.41262 4.78832 4.90780 4.97743 5.06820 5.18175 5.25480 5.29475 5.36579 5.54912 5.64440 5.80371 5.84637 5.97752 6.28665 6.32189 6.54901 6.69570 6.90146 6.93078 7.46479 7.54624 7.63974 7.72790 7.90450 7.97924 7.98588 8.33080 8.58200 8.96265 9.54786 11.03996 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.030858 B = 0.003512 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.156261 B = 7971.821568 C = 8648.375599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.501 5.501 3 C 0.119 3.881 4 C -0.217 4.217 5 C -0.042 4.042 6 C 0.036 3.964 7 N -0.669 5.669 8 C 0.530 3.470 9 O -0.513 6.513 10 C 0.080 3.920 11 H 0.097 0.903 12 N -0.829 5.829 13 C -0.137 4.137 14 C 0.023 3.977 15 C -0.523 4.523 16 H 0.055 0.945 17 C 0.058 3.942 18 N -0.893 5.893 19 Si 0.893 3.107 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.284 1.284 23 C 0.513 3.487 24 O -0.519 6.519 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.161 0.839 29 H 0.148 0.852 30 H 0.139 0.861 31 H 0.410 0.590 32 H 0.345 0.655 33 H 0.354 0.646 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.018 0.982 37 H 0.019 0.981 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.549 19.112 6.459 24.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.214 5.214 3 C -0.008 4.008 4 C -0.241 4.241 5 C -0.066 4.066 6 C -0.062 4.062 7 N -0.320 5.320 8 C 0.318 3.682 9 O -0.385 6.385 10 C -0.036 4.036 11 H 0.115 0.885 12 N -0.361 5.361 13 C -0.177 4.177 14 C -0.014 4.014 15 C -0.561 4.561 16 H 0.073 0.927 17 C -0.144 4.144 18 N -0.532 5.532 19 Si 0.721 3.279 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 C 0.311 3.689 24 O -0.398 6.398 25 H 0.092 0.908 26 H 0.102 0.898 27 H 0.112 0.888 28 H 0.178 0.822 29 H 0.166 0.834 30 H 0.157 0.843 31 H 0.247 0.753 32 H 0.158 0.842 33 H 0.170 0.830 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.036 0.964 37 H 0.037 0.963 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.139 18.372 6.313 24.629 hybrid contribution 2.271 0.242 -0.487 2.336 sum -12.868 18.615 5.826 23.367 Atomic orbital electron populations 1.22116 0.77220 1.04999 1.03620 1.45366 1.09088 1.06514 1.60430 1.21907 0.93884 0.89276 0.95705 1.20466 0.92369 0.98978 1.12309 1.21535 1.01184 0.90928 0.92984 1.18146 0.90230 0.87220 1.10587 1.43158 1.45665 1.16974 1.26162 1.21018 0.82504 0.84308 0.80397 1.90646 1.33760 1.75582 1.38504 1.21417 0.92184 0.90082 0.99868 0.88489 1.58694 1.55093 1.06267 1.16067 1.22390 0.93126 1.02024 1.00138 1.19114 0.93563 0.91205 0.97489 1.21220 0.96867 0.96869 1.41129 0.92652 1.25022 0.98895 0.95049 0.95427 1.69968 1.34047 1.02424 1.46740 0.86525 0.84168 0.78467 0.78787 1.19760 1.20960 1.20972 1.17174 0.88707 0.83173 0.79841 1.91003 1.69189 1.29192 1.50409 0.90787 0.89763 0.88776 0.82164 0.83446 0.84323 0.75262 0.84172 0.83018 0.92478 0.92673 0.96351 0.96254 0.92946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.47 10.36 59.85 0.62 1.09 16 2 N -0.50 -5.33 2.99 -126.95 -0.38 -5.71 16 3 C 0.12 0.84 10.28 -16.79 -0.17 0.66 16 4 C -0.22 -1.62 10.00 -39.90 -0.40 -2.02 16 5 C -0.04 -0.44 10.01 -39.36 -0.39 -0.83 16 6 C 0.04 0.51 5.76 -83.45 -0.48 0.03 16 7 N -0.67 -10.21 5.18 -9.72 -0.05 -10.26 16 8 C 0.53 9.97 6.58 -10.98 -0.07 9.90 16 9 O -0.51 -11.42 14.82 -12.05 -0.18 -11.60 16 10 C 0.08 1.47 3.21 -68.87 -0.22 1.25 16 11 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 12 N -0.83 -15.61 8.94 -5.66 -0.05 -15.66 16 13 C -0.14 -2.76 4.78 -26.74 -0.13 -2.89 16 14 C 0.02 0.58 4.74 -27.89 -0.13 0.44 16 15 C -0.52 -14.42 9.11 -34.44 -0.31 -14.74 16 16 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -26.22 13.29 55.43 0.74 -25.48 16 19 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 20 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 C 0.51 8.00 6.93 -15.19 -0.11 7.90 16 24 O -0.52 -10.31 14.95 -12.72 -0.19 -10.50 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.08 0.34 8.01 -51.93 -0.42 -0.08 16 27 H 0.09 0.95 7.39 -51.93 -0.38 0.56 16 28 H 0.16 0.41 8.04 -52.49 -0.42 -0.01 16 29 H 0.15 0.64 8.06 -52.49 -0.42 0.22 16 30 H 0.14 1.20 8.06 -52.49 -0.42 0.77 16 31 H 0.41 5.03 8.83 -40.82 -0.36 4.67 16 32 H 0.35 6.55 8.58 -39.29 -0.34 6.21 16 33 H 0.35 6.54 7.55 -39.29 -0.30 6.24 16 34 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 35 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.02 0.47 6.87 -51.93 -0.36 0.11 16 37 H 0.02 0.50 8.14 -51.92 -0.42 0.07 16 38 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 326.39 15.07 4.92 4.92 Total: -1.00 -37.66 326.39 -7.18 -44.84 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -5.07 Total: 10.82 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -1.90 Total: 2.32 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: 0.26 Total: -57.11 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.37 Total: -22.10 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -37.66 -7.18 -44.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325739806.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.959 kcal (2) G-P(sol) polarization free energy of solvation -37.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds