Wall clock time and date at job start Tue Mar 31 2020 01:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35944 * 119.61278 * 2 1 4 4 C 1.35268 * 120.82362 * 180.02562 * 3 2 1 5 5 C 1.40196 * 120.03500 * 359.74078 * 4 3 2 6 6 C 1.36818 * 119.23535 * 0.53696 * 5 4 3 7 7 N 1.40147 * 120.40203 * 179.74457 * 6 5 4 8 8 C 1.34785 * 119.99671 * 239.56723 * 7 6 5 9 9 O 1.21302 * 119.99749 * 355.28848 * 8 7 6 10 10 C 1.50694 * 120.00023 * 175.28511 * 8 7 6 11 11 H 1.09006 * 109.47009 * 40.00426 * 10 8 7 12 12 N 1.46900 * 109.47089 * 159.99879 * 10 8 7 13 13 C 1.52995 * 109.47725 * 279.99978 * 10 8 7 14 14 C 1.52994 * 109.47679 * 175.00128 * 13 10 8 15 15 C 1.50698 * 109.47442 * 180.02562 * 14 13 10 16 16 H 1.08003 * 119.99548 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00239 * 179.97438 * 15 14 13 18 18 N 1.31523 * 119.99709 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00368 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47099 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47419 * 119.99772 * 19 17 15 22 22 H 1.48502 * 109.47102 * 240.00397 * 19 17 15 23 23 C 1.34671 * 119.61222 * 180.02562 * 2 1 3 24 24 O 1.22059 * 120.03270 * 359.94592 * 23 2 1 25 25 H 1.09001 * 109.46587 * 269.96535 * 1 2 3 26 26 H 1.08995 * 109.47389 * 29.97336 * 1 2 3 27 27 H 1.09007 * 109.47163 * 149.97725 * 1 2 3 28 28 H 1.07998 * 119.58375 * 0.05471 * 3 2 1 29 29 H 1.08001 * 119.97831 * 180.02562 * 4 3 2 30 30 H 1.07997 * 120.38033 * 180.27535 * 5 4 3 31 31 H 0.96994 * 120.00609 * 59.55938 * 7 6 5 32 32 H 1.00897 * 110.99947 * 59.99671 * 12 10 8 33 33 H 1.00895 * 111.00324 * 183.95435 * 12 10 8 34 34 H 1.09008 * 109.46791 * 54.99862 * 13 10 8 35 35 H 1.09004 * 109.46919 * 295.00699 * 13 10 8 36 36 H 1.08998 * 109.46774 * 59.99718 * 14 13 10 37 37 H 1.09008 * 109.46710 * 300.00094 * 14 13 10 38 38 H 0.97000 * 119.99634 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1368 1.1819 0.0000 4 6 3.4892 1.2105 -0.0005 5 6 4.2164 0.0119 0.0044 6 6 3.5423 -1.1787 -0.0014 7 7 4.2448 -2.3914 -0.0021 8 6 4.0747 -3.2681 -1.0117 9 8 3.2515 -3.0470 -1.8747 10 6 4.9074 -4.5229 -1.0682 11 1 5.0168 -4.9319 -0.0638 12 7 4.2454 -5.5114 -1.9300 13 6 6.2885 -4.1933 -1.6379 14 6 7.1748 -5.4391 -1.5798 15 6 8.5354 -5.1143 -2.1404 16 1 8.7469 -4.1186 -2.5016 17 6 9.5105 -6.0877 -2.1912 18 7 9.2532 -7.2997 -1.7499 19 14 11.1967 -5.6853 -2.8867 20 1 11.2299 -4.2632 -3.3131 21 1 12.2296 -5.9143 -1.8447 22 1 11.4711 -6.5586 -4.0561 23 6 2.1305 -1.1708 -0.0005 24 8 1.5137 -2.2241 0.0000 25 1 -0.3632 -0.0006 1.0277 26 1 -0.3634 0.8902 -0.5134 27 1 -0.3634 -0.8898 -0.5142 28 1 1.5837 2.1095 0.0009 29 1 4.0089 2.1572 -0.0001 30 1 5.2962 0.0282 0.0085 31 1 4.8533 -2.5999 0.7238 32 1 4.1321 -5.1557 -2.8674 33 1 4.7509 -6.3845 -1.9332 34 1 6.7433 -3.3961 -1.0499 35 1 6.1863 -3.8681 -2.6733 36 1 6.7200 -6.2362 -2.1678 37 1 7.2770 -5.7642 -0.5444 38 1 9.9391 -7.9847 -1.7860 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325739806.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:41 Heat of formation + Delta-G solvation = -67.962680 kcal Electronic energy + Delta-G solvation = -21440.391560 eV Core-core repulsion = 18088.974314 eV Total energy + Delta-G solvation = -3351.417247 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.45072 -40.72917 -37.93662 -37.29288 -36.56059 -34.84309 -34.05646 -31.70897 -30.35476 -28.59011 -28.17194 -26.00043 -24.14619 -23.75091 -22.41046 -21.29735 -19.12149 -18.89274 -18.43047 -18.03030 -17.71631 -16.90936 -16.57752 -16.42924 -16.06610 -15.69159 -15.61302 -15.29860 -14.74466 -14.62406 -14.16919 -14.05073 -13.64576 -13.45883 -13.42087 -13.09718 -12.95204 -12.70611 -12.69494 -12.48773 -11.83289 -11.74397 -11.55852 -11.28387 -11.04803 -10.78292 -10.56376 -10.24373 -9.67457 -8.73992 -8.20857 -6.31589 -0.17931 0.95152 1.39811 1.40984 1.48365 1.53384 1.75690 2.20389 2.40930 2.66473 3.12794 3.59225 3.71269 3.85343 3.92954 4.10091 4.12229 4.20224 4.26667 4.41941 4.46297 4.65095 4.75405 4.80018 4.82649 5.07345 5.10893 5.26361 5.46660 5.55476 5.64610 5.73670 5.80546 6.03393 6.08057 6.20987 6.43669 6.45939 6.83976 6.99304 7.29152 7.37598 8.90359 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.030858 B = 0.003512 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.156261 B = 7971.821568 C = 8648.375599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.499 5.499 3 C 0.138 3.862 4 C -0.224 4.224 5 C -0.009 4.009 6 C -0.035 4.035 7 N -0.655 5.655 8 C 0.528 3.472 9 O -0.555 6.555 10 C 0.086 3.914 11 H 0.107 0.893 12 N -0.832 5.832 13 C -0.117 4.117 14 C 0.029 3.971 15 C -0.543 4.543 16 H 0.057 0.943 17 C 0.003 3.997 18 N -0.928 5.928 19 Si 0.962 3.038 20 H -0.263 1.263 21 H -0.277 1.277 22 H -0.281 1.281 23 C 0.492 3.508 24 O -0.589 6.589 25 H 0.089 0.911 26 H 0.131 0.869 27 H 0.059 0.941 28 H 0.220 0.780 29 H 0.192 0.808 30 H 0.157 0.843 31 H 0.420 0.580 32 H 0.343 0.657 33 H 0.354 0.646 34 H 0.071 0.929 35 H 0.045 0.955 36 H 0.001 0.999 37 H 0.002 0.998 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.936 23.190 6.835 27.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.209 5.209 3 C 0.012 3.988 4 C -0.246 4.246 5 C -0.033 4.033 6 C -0.131 4.131 7 N -0.305 5.305 8 C 0.316 3.684 9 O -0.431 6.431 10 C -0.030 4.030 11 H 0.125 0.875 12 N -0.364 5.364 13 C -0.157 4.157 14 C -0.008 4.008 15 C -0.581 4.581 16 H 0.076 0.924 17 C -0.196 4.196 18 N -0.568 5.568 19 Si 0.787 3.213 20 H -0.187 1.187 21 H -0.202 1.202 22 H -0.207 1.207 23 C 0.294 3.706 24 O -0.474 6.474 25 H 0.107 0.893 26 H 0.149 0.851 27 H 0.078 0.922 28 H 0.237 0.763 29 H 0.209 0.791 30 H 0.175 0.825 31 H 0.259 0.741 32 H 0.156 0.844 33 H 0.169 0.831 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.019 0.981 37 H 0.021 0.979 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.521 22.531 6.731 27.638 hybrid contribution 2.022 -0.803 -0.550 2.244 sum -12.499 21.729 6.182 25.818 Atomic orbital electron populations 1.22361 0.75598 1.05594 1.04864 1.45536 1.10431 1.06508 1.58446 1.22954 0.94474 0.89583 0.91811 1.21048 0.92739 0.99356 1.11499 1.21953 1.02343 0.90556 0.88482 1.18343 0.90186 0.87734 1.16885 1.42874 1.45276 1.17117 1.25192 1.20937 0.82042 0.84641 0.80802 1.90610 1.35592 1.76542 1.40387 1.21352 0.91220 0.90369 1.00011 0.87537 1.58699 1.55159 1.06450 1.16096 1.22111 0.93387 1.00206 0.99955 1.18980 0.93465 0.92571 0.95784 1.21642 0.98213 0.97064 1.41157 0.92426 1.25914 1.03042 0.94865 0.95731 1.70088 1.35456 1.03433 1.47868 0.85435 0.79175 0.78608 0.78045 1.18720 1.20227 1.20701 1.17527 0.89420 0.83789 0.79909 1.90946 1.70345 1.31618 1.54471 0.89267 0.85109 0.92159 0.76335 0.79118 0.82526 0.74101 0.84380 0.83081 0.91002 0.93654 0.98106 0.97923 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.76 10.36 127.77 1.32 2.08 16 2 N -0.50 -9.64 2.99 -673.68 -2.01 -11.66 16 3 C 0.14 1.26 10.28 83.37 0.86 2.12 16 4 C -0.22 -2.23 10.00 22.06 0.22 -2.01 16 5 C -0.01 -0.17 10.01 22.41 0.22 0.06 16 6 C -0.04 -1.00 5.76 38.20 0.22 -0.78 16 7 N -0.65 -20.46 5.18 -303.04 -1.57 -22.02 16 8 C 0.53 20.64 6.58 87.65 0.58 21.22 16 9 O -0.56 -25.99 14.82 13.72 0.20 -25.79 16 10 C 0.09 3.26 3.21 44.17 0.14 3.40 16 11 H 0.11 3.81 8.14 -2.38 -0.02 3.79 16 12 N -0.83 -32.86 8.94 -171.81 -1.54 -34.40 16 13 C -0.12 -4.78 4.78 30.59 0.15 -4.63 16 14 C 0.03 1.47 4.74 29.85 0.14 1.62 16 15 C -0.54 -30.15 9.11 25.60 0.23 -29.91 16 16 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 17 C 0.00 0.15 5.46 84.65 0.46 0.61 16 18 N -0.93 -55.24 13.29 21.45 0.28 -54.96 16 19 Si 0.96 43.61 29.54 68.60 2.03 45.64 16 20 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 21 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 22 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 23 C 0.49 15.66 6.93 84.98 0.59 16.25 16 24 O -0.59 -25.03 14.95 11.31 0.17 -24.86 16 25 H 0.09 0.93 8.14 -2.39 -0.02 0.92 16 26 H 0.13 0.50 8.01 -2.39 -0.02 0.48 16 27 H 0.06 1.27 7.39 -2.38 -0.02 1.25 16 28 H 0.22 -0.57 8.04 -2.91 -0.02 -0.59 16 29 H 0.19 0.32 8.06 -2.91 -0.02 0.30 16 30 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 31 H 0.42 10.48 8.83 -92.71 -0.82 9.66 16 32 H 0.34 13.72 8.58 -89.70 -0.77 12.96 16 33 H 0.35 13.74 7.55 -89.70 -0.68 13.07 16 34 H 0.07 2.70 8.14 -2.38 -0.02 2.68 16 35 H 0.04 1.93 8.14 -2.38 -0.02 1.92 16 36 H 0.00 0.03 6.87 -2.39 -0.02 0.02 16 37 H 0.00 0.13 8.14 -2.38 -0.02 0.11 16 38 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -87.79 326.39 1.54 -86.25 By element: Atomic # 1 Polarization: 32.94 SS G_CDS: -1.16 Total: 31.78 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: 5.14 Total: 10.03 kcal Atomic # 7 Polarization: -118.20 SS G_CDS: -4.83 Total: -123.04 kcal Atomic # 8 Polarization: -51.02 SS G_CDS: 0.37 Total: -50.65 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -87.79 1.54 -86.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325739806.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.284 kcal (2) G-P(sol) polarization free energy of solvation -87.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds