Wall clock time and date at job start Tue Mar 31 2020 01:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34954 * 126.03760 * 2 1 4 4 C 1.35316 * 107.74231 * 179.74935 * 3 2 1 5 5 C 1.39872 * 107.92219 * 0.39214 * 4 3 2 6 6 C 1.50702 * 125.89913 * 179.86186 * 5 4 3 7 7 C 1.52997 * 109.46904 * 124.71753 * 6 5 4 8 8 C 1.50696 * 109.47129 * 180.02562 * 7 6 5 9 9 O 1.21281 * 119.99958 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00331 * 179.97438 * 8 7 6 11 11 C 1.47579 * 134.49442 * 179.97438 * 10 8 7 12 12 C 1.53953 * 86.11613 * 155.35662 * 11 10 8 13 13 O 1.42891 * 113.74249 * 269.15295 * 12 11 10 14 14 C 1.50704 * 113.73748 * 137.95211 * 12 11 10 15 15 H 1.07998 * 120.00120 * 3.90458 * 14 12 11 16 16 C 1.37883 * 119.99782 * 183.91187 * 14 12 11 17 17 N 1.31513 * 120.00053 * 185.23007 * 16 14 12 18 18 Si 1.86796 * 119.99938 * 5.22387 * 16 14 12 19 19 H 1.48495 * 109.47550 * 270.00395 * 18 16 14 20 20 H 1.48511 * 109.47116 * 30.00543 * 18 16 14 21 21 H 1.48499 * 109.47060 * 149.99973 * 18 16 14 22 22 C 1.47582 * 134.49131 * 359.97438 * 10 8 7 23 23 N 1.30836 * 108.20036 * 359.60301 * 5 4 3 24 24 H 1.09001 * 109.46636 * 269.97881 * 1 2 3 25 25 H 1.09001 * 109.46908 * 29.97556 * 1 2 3 26 26 H 1.08999 * 109.47181 * 149.97960 * 1 2 3 27 27 H 1.07997 * 126.12378 * 359.97438 * 3 2 1 28 28 H 1.07992 * 126.04007 * 180.27044 * 4 3 2 29 29 H 1.08998 * 109.46875 * 4.71345 * 6 5 4 30 30 H 1.08999 * 109.47108 * 244.71412 * 6 5 4 31 31 H 1.08998 * 109.47688 * 60.00090 * 7 6 5 32 32 H 1.09008 * 109.46992 * 299.99931 * 7 6 5 33 33 H 1.08998 * 113.77112 * 41.06103 * 11 10 8 34 34 H 1.09000 * 113.87384 * 269.66796 * 11 10 8 35 35 H 0.96707 * 113.99791 * 172.50486 * 13 12 11 36 36 H 0.97008 * 119.99681 * 354.94910 * 17 16 14 37 37 H 1.09003 * 113.77322 * 90.33860 * 22 10 8 38 38 H 1.09009 * 113.76717 * 318.93870 * 22 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0913 0.0000 4 6 3.5437 0.6665 0.0056 5 6 3.5347 -0.7322 0.0001 6 6 4.7497 -1.6237 0.0006 7 6 4.6709 -2.5924 1.1822 8 6 5.8861 -3.4836 1.1831 9 8 6.7317 -3.3567 0.3230 10 7 6.0333 -4.4215 2.1396 11 6 7.0600 -5.4375 2.4427 12 6 6.5574 -5.3604 3.8958 13 8 7.2478 -4.3963 4.6930 14 6 6.4396 -6.7035 4.5691 15 1 6.7583 -7.5965 4.0520 16 6 5.9250 -6.7923 5.8452 17 7 5.9170 -7.9483 6.4721 18 14 5.2391 -5.2704 6.6835 19 1 6.3230 -4.5885 7.4355 20 1 4.6900 -4.3460 5.6591 21 1 4.1590 -5.6668 7.6223 22 6 5.2326 -4.8452 3.3047 23 7 2.2892 -1.1328 0.0001 24 1 -0.3632 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5141 27 1 1.9282 2.1193 -0.0004 28 1 4.4211 1.2962 0.0112 29 1 5.6482 -1.0133 0.0904 30 1 4.7860 -2.1889 -0.9307 31 1 3.7724 -3.2029 1.0924 32 1 4.6346 -2.0272 2.1136 33 1 8.0820 -5.0819 2.3120 34 1 6.8808 -6.4014 1.9665 35 1 6.8626 -4.2626 5.5699 36 1 6.2050 -8.7519 6.0113 37 1 4.5149 -5.6345 3.0810 38 1 4.7956 -4.0166 3.8621 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326329092.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:40 Heat of formation + Delta-G solvation = 35.090911 kcal Electronic energy + Delta-G solvation = -21309.521536 eV Core-core repulsion = 17962.573028 eV Total energy + Delta-G solvation = -3346.948507 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.29324 -39.72431 -37.73338 -34.59542 -34.33253 -32.60610 -31.95275 -30.12319 -28.98399 -27.02192 -25.67780 -24.99421 -23.49210 -21.29432 -20.06824 -19.54218 -18.47477 -17.97464 -17.19075 -16.40835 -15.97710 -15.68358 -15.44099 -15.05019 -14.57381 -14.13563 -13.82636 -13.63223 -13.42580 -13.07441 -12.88029 -12.62272 -12.49231 -12.35227 -12.00876 -11.87565 -11.79732 -11.35162 -11.16106 -10.77609 -10.56605 -10.37726 -9.92330 -9.49907 -9.44635 -9.25939 -8.99063 -8.69700 -8.52896 -7.98659 -6.70510 -4.46598 1.73714 2.35506 2.66761 3.10350 3.11885 3.15118 3.31640 3.46961 4.17660 4.29202 4.56914 4.68989 4.78473 4.85793 5.03172 5.10065 5.12080 5.20768 5.27568 5.49659 5.61656 5.66594 5.73183 5.83932 6.03930 6.07991 6.14667 6.15923 6.30123 6.35778 6.49575 6.56474 6.64166 6.84426 7.51047 7.61302 8.07481 8.34362 8.48379 8.60353 8.66702 9.28893 10.65282 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.021908 B = 0.003970 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.749891 B = 7051.069014 C = 7792.758889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.381 5.381 3 C 0.050 3.950 4 C -0.267 4.267 5 C 0.080 3.920 6 C -0.021 4.021 7 C -0.127 4.127 8 C 0.530 3.470 9 O -0.562 6.562 10 N -0.634 5.634 11 C 0.126 3.874 12 C 0.196 3.804 13 O -0.554 6.554 14 C -0.610 4.610 15 H 0.072 0.928 16 C 0.034 3.966 17 N -0.892 5.892 18 Si 1.032 2.968 19 H -0.275 1.275 20 H -0.267 1.267 21 H -0.280 1.280 22 C 0.060 3.940 23 N -0.293 5.293 24 H 0.074 0.926 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.172 0.828 28 H 0.148 0.852 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.354 0.646 36 H 0.274 0.726 37 H 0.092 0.908 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.837 16.641 -9.604 22.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.163 5.163 3 C -0.096 4.096 4 C -0.297 4.297 5 C -0.086 4.086 6 C -0.060 4.060 7 C -0.167 4.167 8 C 0.320 3.680 9 O -0.443 6.443 10 N -0.368 5.368 11 C 0.004 3.996 12 C 0.155 3.845 13 O -0.364 6.364 14 C -0.648 4.648 15 H 0.090 0.910 16 C -0.173 4.173 17 N -0.525 5.525 18 Si 0.860 3.140 19 H -0.202 1.202 20 H -0.193 1.193 21 H -0.206 1.206 22 C -0.063 4.063 23 N -0.116 5.116 24 H 0.092 0.908 25 H 0.103 0.897 26 H 0.107 0.893 27 H 0.190 0.810 28 H 0.166 0.834 29 H 0.109 0.891 30 H 0.105 0.895 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.092 0.908 34 H 0.107 0.893 35 H 0.204 0.796 36 H 0.084 0.916 37 H 0.110 0.890 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.666 16.432 -9.311 22.199 hybrid contribution 0.554 0.119 -0.864 1.033 sum -11.113 16.551 -10.174 22.382 Atomic orbital electron populations 1.21828 0.74397 1.04319 1.03348 1.48533 1.06570 1.03901 1.57319 1.22510 0.91242 0.93387 1.02483 1.21462 0.97066 0.94474 1.16653 1.22403 0.93290 0.94087 0.98862 1.19757 0.92076 0.95228 0.98968 1.21501 0.97376 0.97649 1.00209 1.20206 0.87486 0.80697 0.79582 1.90639 1.44633 1.71596 1.37382 1.50155 1.25886 1.33219 1.27556 1.23230 0.92882 0.90194 0.93262 1.20519 0.87088 0.88217 0.88658 1.86457 1.57761 1.63156 1.28992 1.22287 1.47065 0.91904 1.03527 0.91024 1.25812 0.94007 1.03134 0.94352 1.70768 1.43916 0.99709 1.38124 0.84297 0.77815 0.74910 0.76965 1.20235 1.19307 1.20626 1.24723 0.98862 0.98418 0.84277 1.77350 1.01389 1.07629 1.25200 0.90786 0.89653 0.89334 0.81046 0.83424 0.89124 0.89476 0.88755 0.89222 0.90804 0.89251 0.79592 0.91591 0.88996 0.90967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.64 11.47 59.85 0.69 1.32 16 2 N -0.38 -4.11 4.01 -68.16 -0.27 -4.38 16 3 C 0.05 0.47 11.49 -17.22 -0.20 0.27 16 4 C -0.27 -3.01 10.72 -40.01 -0.43 -3.44 16 5 C 0.08 1.08 6.49 -82.40 -0.53 0.55 16 6 C -0.02 -0.29 5.08 -27.88 -0.14 -0.43 16 7 C -0.13 -1.97 5.41 -27.89 -0.15 -2.12 16 8 C 0.53 10.33 8.06 -10.99 -0.09 10.24 16 9 O -0.56 -12.34 16.71 5.56 0.09 -12.25 16 10 N -0.63 -12.98 3.61 -178.30 -0.64 -13.62 16 11 C 0.13 2.72 8.23 -2.97 -0.02 2.70 16 12 C 0.20 4.52 1.06 -90.84 -0.10 4.43 16 13 O -0.55 -13.00 13.42 -35.23 -0.47 -13.47 16 14 C -0.61 -15.90 9.04 -34.44 -0.31 -16.21 16 15 H 0.07 1.99 8.04 -52.49 -0.42 1.57 16 16 C 0.03 0.91 5.47 -17.82 -0.10 0.81 16 17 N -0.89 -25.51 13.70 55.43 0.76 -24.75 16 18 Si 1.03 22.17 24.79 -169.99 -4.21 17.96 16 19 H -0.28 -5.62 6.95 56.52 0.39 -5.23 16 20 H -0.27 -5.10 4.86 56.52 0.27 -4.82 16 21 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 22 C 0.06 1.22 6.78 -2.97 -0.02 1.20 16 23 N -0.29 -4.14 12.54 33.67 0.42 -3.71 16 24 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.17 0.90 8.06 -52.49 -0.42 0.48 16 28 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 29 H 0.09 1.23 8.08 -51.93 -0.42 0.81 16 30 H 0.09 1.26 8.10 -51.93 -0.42 0.84 16 31 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 32 H 0.09 1.33 8.14 -51.92 -0.42 0.91 16 33 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 34 H 0.09 1.83 8.09 -51.93 -0.42 1.41 16 35 H 0.35 7.66 4.23 45.56 0.19 7.85 16 36 H 0.27 7.79 8.72 -40.82 -0.36 7.43 16 37 H 0.09 1.79 8.09 -51.93 -0.42 1.37 16 38 H 0.07 1.37 6.54 -51.92 -0.34 1.03 16 LS Contribution 321.84 15.07 4.85 4.85 Total: -1.00 -33.23 321.84 -5.80 -39.04 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -4.92 Total: 11.04 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -1.41 Total: -0.69 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: 0.26 Total: -46.47 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -0.38 Total: -25.72 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.21 Total: 17.96 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.23 -5.80 -39.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326329092.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.128 kcal (2) G-P(sol) polarization free energy of solvation -33.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds