Wall clock time and date at job start Tue Mar 31 2020 01:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34954 * 126.03760 * 2 1 4 4 C 1.35316 * 107.74231 * 179.74935 * 3 2 1 5 5 C 1.39872 * 107.92219 * 0.39214 * 4 3 2 6 6 C 1.50702 * 125.89913 * 179.86186 * 5 4 3 7 7 C 1.52997 * 109.46904 * 124.71753 * 6 5 4 8 8 C 1.50696 * 109.47129 * 180.02562 * 7 6 5 9 9 O 1.21281 * 119.99958 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00331 * 179.97438 * 8 7 6 11 11 C 1.47579 * 134.49442 * 179.97438 * 10 8 7 12 12 C 1.53953 * 86.11613 * 155.35662 * 11 10 8 13 13 O 1.42891 * 113.74249 * 269.15295 * 12 11 10 14 14 C 1.50704 * 113.73748 * 137.95211 * 12 11 10 15 15 H 1.07998 * 120.00120 * 3.90458 * 14 12 11 16 16 C 1.37883 * 119.99782 * 183.91187 * 14 12 11 17 17 N 1.31513 * 120.00053 * 185.23007 * 16 14 12 18 18 Si 1.86796 * 119.99938 * 5.22387 * 16 14 12 19 19 H 1.48495 * 109.47550 * 270.00395 * 18 16 14 20 20 H 1.48511 * 109.47116 * 30.00543 * 18 16 14 21 21 H 1.48499 * 109.47060 * 149.99973 * 18 16 14 22 22 C 1.47582 * 134.49131 * 359.97438 * 10 8 7 23 23 N 1.30836 * 108.20036 * 359.60301 * 5 4 3 24 24 H 1.09001 * 109.46636 * 269.97881 * 1 2 3 25 25 H 1.09001 * 109.46908 * 29.97556 * 1 2 3 26 26 H 1.08999 * 109.47181 * 149.97960 * 1 2 3 27 27 H 1.07997 * 126.12378 * 359.97438 * 3 2 1 28 28 H 1.07992 * 126.04007 * 180.27044 * 4 3 2 29 29 H 1.08998 * 109.46875 * 4.71345 * 6 5 4 30 30 H 1.08999 * 109.47108 * 244.71412 * 6 5 4 31 31 H 1.08998 * 109.47688 * 60.00090 * 7 6 5 32 32 H 1.09008 * 109.46992 * 299.99931 * 7 6 5 33 33 H 1.08998 * 113.77112 * 41.06103 * 11 10 8 34 34 H 1.09000 * 113.87384 * 269.66796 * 11 10 8 35 35 H 0.96707 * 113.99791 * 172.50486 * 13 12 11 36 36 H 0.97008 * 119.99681 * 354.94910 * 17 16 14 37 37 H 1.09003 * 113.77322 * 90.33860 * 22 10 8 38 38 H 1.09009 * 113.76717 * 318.93870 * 22 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0913 0.0000 4 6 3.5437 0.6665 0.0056 5 6 3.5347 -0.7322 0.0001 6 6 4.7497 -1.6237 0.0006 7 6 4.6709 -2.5924 1.1822 8 6 5.8861 -3.4836 1.1831 9 8 6.7317 -3.3567 0.3230 10 7 6.0333 -4.4215 2.1396 11 6 7.0600 -5.4375 2.4427 12 6 6.5574 -5.3604 3.8958 13 8 7.2478 -4.3963 4.6930 14 6 6.4396 -6.7035 4.5691 15 1 6.7583 -7.5965 4.0520 16 6 5.9250 -6.7923 5.8452 17 7 5.9170 -7.9483 6.4721 18 14 5.2391 -5.2704 6.6835 19 1 6.3230 -4.5885 7.4355 20 1 4.6900 -4.3460 5.6591 21 1 4.1590 -5.6668 7.6223 22 6 5.2326 -4.8452 3.3047 23 7 2.2892 -1.1328 0.0001 24 1 -0.3632 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5141 27 1 1.9282 2.1193 -0.0004 28 1 4.4211 1.2962 0.0112 29 1 5.6482 -1.0133 0.0904 30 1 4.7860 -2.1889 -0.9307 31 1 3.7724 -3.2029 1.0924 32 1 4.6346 -2.0272 2.1136 33 1 8.0820 -5.0819 2.3120 34 1 6.8808 -6.4014 1.9665 35 1 6.8626 -4.2626 5.5699 36 1 6.2050 -8.7519 6.0113 37 1 4.5149 -5.6345 3.0810 38 1 4.7956 -4.0166 3.8621 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326329092.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:40 Heat of formation + Delta-G solvation = 9.584921 kcal Electronic energy + Delta-G solvation = -21310.627558 eV Core-core repulsion = 17962.573028 eV Total energy + Delta-G solvation = -3348.054530 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.10110 -41.38180 -39.38887 -36.16985 -35.51961 -34.64882 -32.91093 -30.99270 -30.55193 -28.17060 -27.18367 -26.66367 -24.71109 -22.06299 -21.77274 -20.51038 -20.13380 -19.87120 -18.23554 -17.76532 -17.58977 -17.05415 -16.68254 -16.34441 -16.00939 -15.28363 -15.12403 -14.95814 -14.57221 -14.39866 -14.22670 -13.97318 -13.83984 -13.52670 -13.33931 -13.09346 -12.96904 -12.90371 -12.50163 -12.25194 -12.09941 -11.68142 -11.47952 -11.29056 -11.08524 -10.91811 -10.40671 -10.17305 -9.68395 -9.46670 -8.81954 -6.60267 0.96517 1.39066 1.47409 1.58441 1.62709 1.69007 1.76289 1.96696 2.40429 2.84544 3.22604 3.46395 3.68119 3.81638 3.89873 4.09391 4.14947 4.24818 4.34594 4.41221 4.46680 4.52960 4.62891 4.66427 4.67412 4.72207 4.83366 4.85330 4.93685 4.98743 5.07259 5.18284 5.56562 5.69564 5.89841 6.21440 6.37620 6.71898 6.77686 6.78847 7.08215 7.25704 8.52756 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.021908 B = 0.003970 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.749891 B = 7051.069014 C = 7792.758889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.383 5.383 3 C 0.064 3.936 4 C -0.290 4.290 5 C 0.062 3.938 6 C -0.014 4.014 7 C -0.113 4.113 8 C 0.528 3.472 9 O -0.590 6.590 10 N -0.636 5.636 11 C 0.121 3.879 12 C 0.187 3.813 13 O -0.561 6.561 14 C -0.615 4.615 15 H 0.037 0.963 16 C -0.013 4.013 17 N -0.926 5.926 18 Si 1.065 2.935 19 H -0.256 1.256 20 H -0.226 1.226 21 H -0.283 1.283 22 C 0.074 3.926 23 N -0.335 5.335 24 H 0.084 0.916 25 H 0.120 0.880 26 H 0.084 0.916 27 H 0.217 0.783 28 H 0.161 0.839 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.067 0.933 34 H 0.093 0.907 35 H 0.362 0.638 36 H 0.258 0.742 37 H 0.099 0.901 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.871 20.128 -9.689 25.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.166 5.166 3 C -0.082 4.082 4 C -0.319 4.319 5 C -0.103 4.103 6 C -0.053 4.053 7 C -0.153 4.153 8 C 0.320 3.680 9 O -0.472 6.472 10 N -0.370 5.370 11 C -0.002 4.002 12 C 0.146 3.854 13 O -0.372 6.372 14 C -0.653 4.653 15 H 0.055 0.945 16 C -0.213 4.213 17 N -0.560 5.560 18 Si 0.885 3.115 19 H -0.182 1.182 20 H -0.150 1.150 21 H -0.210 1.210 22 C -0.049 4.049 23 N -0.159 5.159 24 H 0.103 0.897 25 H 0.138 0.862 26 H 0.102 0.898 27 H 0.234 0.766 28 H 0.179 0.821 29 H 0.110 0.890 30 H 0.093 0.907 31 H 0.118 0.882 32 H 0.121 0.879 33 H 0.086 0.914 34 H 0.111 0.889 35 H 0.214 0.786 36 H 0.067 0.933 37 H 0.117 0.883 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.701 19.915 -9.423 25.944 hybrid contribution 1.199 -1.001 -0.914 1.809 sum -12.502 18.914 -10.337 24.918 Atomic orbital electron populations 1.22187 0.72086 1.05879 1.04529 1.48910 1.07956 1.03465 1.56246 1.23187 0.90393 0.94823 0.99811 1.21752 0.98715 0.93672 1.17744 1.22326 0.92876 0.95053 1.00036 1.19618 0.92972 0.95004 0.97730 1.21452 0.95155 0.97171 1.01494 1.20921 0.88172 0.80332 0.78591 1.90626 1.45986 1.72212 1.38356 1.50155 1.25446 1.33254 1.28118 1.23189 0.93128 0.91040 0.92796 1.20501 0.89198 0.86927 0.88755 1.86439 1.58380 1.62660 1.29689 1.22404 1.46503 0.92537 1.03858 0.94491 1.27318 0.93552 1.05078 0.95324 1.70909 1.46263 1.00177 1.38673 0.83961 0.77885 0.72356 0.77298 1.18172 1.14997 1.20974 1.24553 0.97274 0.99270 0.83771 1.77245 1.02014 1.09891 1.26752 0.89746 0.86190 0.89770 0.76648 0.82121 0.88998 0.90712 0.88182 0.87896 0.91439 0.88905 0.78623 0.93277 0.88260 0.88623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.86 11.47 127.77 1.47 2.32 16 2 N -0.38 -7.16 4.01 -369.55 -1.48 -8.64 16 3 C 0.06 0.97 11.49 83.54 0.96 1.93 16 4 C -0.29 -5.81 10.72 21.99 0.24 -5.58 16 5 C 0.06 1.59 6.49 43.10 0.28 1.87 16 6 C -0.01 -0.37 5.08 29.85 0.15 -0.22 16 7 C -0.11 -3.29 5.41 29.85 0.16 -3.12 16 8 C 0.53 19.90 8.06 87.66 0.71 20.60 16 9 O -0.59 -25.64 16.71 -3.03 -0.05 -25.69 16 10 N -0.64 -25.11 3.61 -840.24 -3.03 -28.14 16 11 C 0.12 5.20 8.23 86.48 0.71 5.91 16 12 C 0.19 8.44 1.06 -10.88 -0.01 8.42 16 13 O -0.56 -25.21 13.42 -148.98 -2.00 -27.21 16 14 C -0.62 -32.50 9.04 25.60 0.23 -32.27 16 15 H 0.04 2.15 8.04 -2.91 -0.02 2.12 16 16 C -0.01 -0.67 5.47 84.66 0.46 -0.21 16 17 N -0.93 -54.21 13.70 21.45 0.29 -53.91 16 18 Si 1.06 42.67 24.79 68.60 1.70 44.37 16 19 H -0.26 -9.48 6.95 99.48 0.69 -8.79 16 20 H -0.23 -7.49 4.86 99.48 0.48 -7.01 16 21 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 22 C 0.07 2.81 6.78 86.48 0.59 3.39 16 23 N -0.33 -8.91 12.54 -47.38 -0.59 -9.51 16 24 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 26 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.22 1.11 8.06 -2.91 -0.02 1.08 16 28 H 0.16 2.61 8.06 -2.91 -0.02 2.58 16 29 H 0.09 2.41 8.08 -2.39 -0.02 2.39 16 30 H 0.07 2.17 8.10 -2.39 -0.02 2.15 16 31 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 32 H 0.10 2.77 8.14 -2.38 -0.02 2.75 16 33 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 34 H 0.09 3.86 8.09 -2.39 -0.02 3.84 16 35 H 0.36 14.63 4.23 -74.05 -0.31 14.31 16 36 H 0.26 15.38 8.72 -92.70 -0.81 14.57 16 37 H 0.10 3.65 8.09 -2.39 -0.02 3.63 16 38 H 0.10 3.21 6.54 -2.38 -0.02 3.19 16 Total: -1.00 -73.52 321.84 1.26 -72.26 By element: Atomic # 1 Polarization: 32.93 SS G_CDS: 0.48 Total: 33.41 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: 5.94 Total: 3.06 kcal Atomic # 7 Polarization: -95.39 SS G_CDS: -4.81 Total: -100.20 kcal Atomic # 8 Polarization: -50.85 SS G_CDS: -2.05 Total: -52.90 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 1.70 Total: 44.37 kcal Total: -73.52 1.26 -72.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326329092.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.847 kcal (2) G-P(sol) polarization free energy of solvation -73.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds