Wall clock time and date at job start Tue Mar 31 2020 01:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35950 * 117.00182 * 2 1 4 4 C 1.38665 * 120.06337 * 0.25071 * 3 2 1 5 5 C 1.38184 * 119.96733 * 180.25375 * 4 3 2 6 6 C 1.50695 * 119.95134 * 179.77451 * 5 4 3 7 7 N 1.46904 * 109.46951 * 269.72153 * 6 5 4 8 8 C 1.46900 * 111.00269 * 179.97438 * 7 6 5 9 9 C 1.52998 * 109.46884 * 174.87541 * 8 7 6 10 10 C 1.50705 * 115.55206 * 296.30337 * 9 8 7 11 11 H 1.08003 * 119.99437 * 95.20908 * 10 9 8 12 12 C 1.37877 * 120.00329 * 274.93418 * 10 9 8 13 13 N 1.31515 * 119.99732 * 355.41631 * 12 10 9 14 14 Si 1.86797 * 119.99830 * 175.41408 * 12 10 9 15 15 H 1.48503 * 109.46755 * 90.00110 * 14 12 10 16 16 H 1.48502 * 109.46887 * 209.99551 * 14 12 10 17 17 H 1.48498 * 109.47472 * 329.99881 * 14 12 10 18 18 C 1.53001 * 117.50130 * 81.98067 * 9 8 7 19 19 C 1.53000 * 117.49451 * 150.64227 * 9 8 7 20 20 C 1.38261 * 120.09540 * 359.49357 * 5 4 3 21 21 C 1.38262 * 120.12622 * 0.25551 * 20 5 4 22 22 C 1.38331 * 120.02751 * 359.97438 * 21 20 5 23 23 F 1.35102 * 120.04707 * 179.97438 * 22 21 20 24 24 H 1.09001 * 109.46758 * 300.00402 * 1 2 3 25 25 H 1.09001 * 109.46827 * 59.99839 * 1 2 3 26 26 H 1.08992 * 109.47679 * 179.97438 * 1 2 3 27 27 H 1.07998 * 120.01557 * 0.02630 * 4 3 2 28 28 H 1.09003 * 109.47471 * 149.72457 * 6 5 4 29 29 H 1.08996 * 109.47373 * 29.71608 * 6 5 4 30 30 H 1.00904 * 111.00100 * 56.04793 * 7 6 5 31 31 H 1.09002 * 109.46699 * 54.87769 * 8 7 6 32 32 H 1.08993 * 109.47270 * 294.87686 * 8 7 6 33 33 H 0.96996 * 119.99571 * 180.02562 * 13 12 10 34 34 H 1.08998 * 117.50117 * 214.99752 * 18 9 8 35 35 H 1.09002 * 117.49567 * 0.02562 * 18 9 8 36 36 H 1.08997 * 117.50075 * 359.97337 * 19 9 8 37 37 H 1.09002 * 117.49945 * 144.97567 * 19 9 8 38 38 H 1.07995 * 119.93701 * 180.27754 * 20 5 4 39 39 H 1.07996 * 119.98435 * 180.02562 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2924 2.3751 0.0053 5 6 1.9218 3.6053 -0.0001 6 6 1.1022 4.8698 0.0005 7 7 0.8358 5.2813 -1.3843 8 6 0.0365 6.5132 -1.4231 9 6 -0.1118 6.9794 -2.8727 10 6 1.1691 7.3697 -3.5643 11 1 1.6933 6.6503 -4.1760 12 6 1.6687 8.6467 -3.4208 13 7 0.9828 9.5502 -2.7553 14 14 3.3199 9.0934 -4.1714 15 1 3.1153 9.5960 -5.5538 16 1 3.9669 10.1491 -3.3516 17 1 4.1898 7.8905 -4.2057 18 6 -1.1986 6.3156 -3.7207 19 6 -1.3774 7.7574 -3.2385 20 6 3.3026 3.6776 0.0000 21 6 4.0581 2.5197 0.0000 22 6 3.4334 1.2855 0.0005 23 9 4.1713 0.1538 0.0000 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 0.2139 2.3201 0.0098 28 1 1.6514 5.6586 0.5146 29 1 0.1577 4.6904 0.5142 30 1 0.3843 4.5414 -1.9009 31 1 0.5354 7.2883 -0.8413 32 1 -0.9496 6.3200 -1.0009 33 1 1.3341 10.4487 -2.6547 34 1 -0.9872 6.1610 -4.7788 35 1 -1.8082 5.5469 -3.2457 36 1 -2.1046 7.9366 -2.4466 37 1 -1.2836 8.5516 -3.9792 38 1 3.7918 4.6404 0.0003 39 1 5.1365 2.5789 0.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326915658.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:24 Heat of formation + Delta-G solvation = -31.578831 kcal Electronic energy + Delta-G solvation = -21246.478599 eV Core-core repulsion = 17876.719113 eV Total energy + Delta-G solvation = -3369.759486 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.74275 -40.10899 -37.91202 -36.89202 -34.44498 -31.82319 -30.84327 -30.26986 -27.71895 -26.20603 -25.17852 -23.24237 -22.56354 -21.39314 -20.92419 -19.03910 -18.12009 -17.17247 -16.78157 -16.21492 -16.13116 -15.09067 -15.00357 -14.58044 -14.54464 -14.40287 -14.15213 -14.01923 -13.52586 -13.04550 -12.86250 -12.31002 -12.18633 -11.99238 -11.56639 -11.39634 -11.24905 -11.07334 -11.02754 -10.87317 -10.68553 -10.42365 -10.14178 -9.38358 -8.94436 -8.87520 -8.32670 -8.19733 -8.01418 -7.62560 -5.93681 -3.95821 1.09862 1.27693 3.02250 3.35066 3.42092 3.47835 3.54425 4.22487 4.49223 4.59070 4.75120 4.88300 4.96804 5.04665 5.10940 5.22670 5.30606 5.35940 5.41840 5.47187 5.66694 5.83459 5.96451 6.05126 6.15681 6.22251 6.30110 6.46550 6.54906 6.60194 6.65267 6.74437 6.85666 7.15210 7.19260 7.50232 7.53747 7.87410 7.98640 8.07046 8.56325 9.03370 9.67430 11.15468 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.019289 B = 0.004295 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.227916 B = 6517.776833 C = 7439.786303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.313 6.313 3 C 0.092 3.908 4 C -0.177 4.177 5 C -0.039 4.039 6 C 0.095 3.905 7 N -0.661 5.661 8 C 0.107 3.893 9 C 0.048 3.952 10 C -0.467 4.467 11 H 0.058 0.942 12 C 0.067 3.933 13 N -0.888 5.888 14 Si 0.888 3.112 15 H -0.284 1.284 16 H -0.288 1.288 17 H -0.273 1.273 18 C -0.217 4.217 19 C -0.152 4.152 20 C -0.102 4.102 21 C -0.116 4.116 22 C 0.060 3.940 23 F -0.138 7.138 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.100 0.900 27 H 0.134 0.866 28 H 0.082 0.918 29 H 0.029 0.971 30 H 0.332 0.668 31 H 0.074 0.926 32 H -0.003 1.003 33 H 0.257 0.743 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.084 0.916 38 H 0.139 0.861 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.547 -14.199 7.974 16.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.227 6.227 3 C 0.046 3.954 4 C -0.197 4.197 5 C -0.040 4.040 6 C -0.034 4.034 7 N -0.291 5.291 8 C -0.021 4.021 9 C 0.047 3.953 10 C -0.505 4.505 11 H 0.076 0.924 12 C -0.135 4.135 13 N -0.526 5.526 14 Si 0.716 3.284 15 H -0.210 1.210 16 H -0.214 1.214 17 H -0.198 1.198 18 C -0.255 4.255 19 C -0.190 4.190 20 C -0.121 4.121 21 C -0.135 4.135 22 C 0.040 3.960 23 F -0.117 7.117 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.119 0.881 27 H 0.152 0.848 28 H 0.101 0.899 29 H 0.047 0.953 30 H 0.149 0.851 31 H 0.092 0.908 32 H 0.015 0.985 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.103 0.897 38 H 0.157 0.843 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.164 -13.891 7.975 16.019 hybrid contribution -0.181 -0.036 -0.143 0.234 sum -0.017 -13.927 7.833 15.979 Atomic orbital electron populations 1.23094 0.78067 1.04013 1.01654 1.86105 1.21617 1.25979 1.88991 1.18914 0.90750 0.85407 1.00360 1.21029 1.00069 0.91070 1.07501 1.19805 0.94165 0.94136 0.95860 1.20929 0.96755 0.93281 0.92457 1.60332 1.52726 1.06612 1.09454 1.21572 0.91710 0.90272 0.98540 1.18836 0.89652 0.96760 0.90032 1.20283 1.05542 0.96037 1.28593 0.92354 1.24931 0.96896 0.96350 0.95303 1.70015 1.37303 1.03373 1.41867 0.86668 0.84776 0.78111 0.78860 1.21021 1.21434 1.19765 1.22998 1.06780 0.95623 1.00053 1.22495 1.01421 0.92749 1.02303 1.20917 0.93020 0.98253 0.99909 1.21023 1.01006 0.90142 1.01350 1.16960 0.85892 0.82938 1.10244 1.91470 1.76462 1.49261 1.94480 0.92547 0.92285 0.88144 0.84840 0.89918 0.95333 0.85110 0.90790 0.98530 0.93360 0.90562 0.92357 0.92330 0.89704 0.84316 0.84138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.31 -4.02 10.36 -19.58 -0.20 -4.22 16 3 C 0.09 1.24 6.69 -39.18 -0.26 0.98 16 4 C -0.18 -2.25 8.69 -39.44 -0.34 -2.59 16 5 C -0.04 -0.53 5.39 -104.64 -0.56 -1.10 16 6 C 0.09 1.41 5.80 -4.98 -0.03 1.38 16 7 N -0.66 -12.17 6.34 -115.06 -0.73 -12.90 16 8 C 0.11 2.27 5.51 -3.83 -0.02 2.25 16 9 C 0.05 1.14 1.64 -155.66 -0.25 0.89 16 10 C -0.47 -12.50 8.71 -34.44 -0.30 -12.80 16 11 H 0.06 1.60 7.82 -52.48 -0.41 1.19 16 12 C 0.07 1.81 5.43 -17.82 -0.10 1.71 16 13 N -0.89 -24.84 12.65 55.43 0.70 -24.14 16 14 Si 0.89 21.24 29.54 -169.99 -5.02 16.21 16 15 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 18 C -0.22 -4.63 9.96 -26.69 -0.27 -4.90 16 19 C -0.15 -3.52 9.15 -26.69 -0.24 -3.76 16 20 C -0.10 -1.37 9.69 -39.56 -0.38 -1.75 16 21 C -0.12 -1.48 10.02 -39.54 -0.40 -1.87 16 22 C 0.06 0.84 7.31 -39.30 -0.29 0.55 16 23 F -0.14 -2.03 17.11 2.25 0.04 -1.99 16 24 H 0.06 0.41 7.65 -51.93 -0.40 0.02 16 25 H 0.06 0.47 7.67 -51.93 -0.40 0.07 16 26 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.13 1.43 6.30 -52.49 -0.33 1.10 16 28 H 0.08 1.25 8.08 -51.93 -0.42 0.83 16 29 H 0.03 0.39 8.08 -51.93 -0.42 -0.03 16 30 H 0.33 5.82 8.78 -39.29 -0.34 5.48 16 31 H 0.07 1.73 8.13 -51.93 -0.42 1.31 16 32 H 0.00 -0.07 8.10 -51.93 -0.42 -0.49 16 33 H 0.26 6.93 8.31 -40.82 -0.34 6.60 16 34 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 37 H 0.08 2.14 8.14 -51.93 -0.42 1.72 16 38 H 0.14 1.77 8.06 -52.49 -0.42 1.35 16 39 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 336.89 15.07 5.08 5.08 Total: -1.00 -29.33 336.89 -8.25 -37.58 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -5.66 Total: 4.18 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: -2.46 Total: -19.81 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: -0.03 Total: -37.03 kcal Atomic # 8 Polarization: -4.02 SS G_CDS: -0.20 Total: -4.22 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.33 -8.25 -37.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326915658.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.000 kcal (2) G-P(sol) polarization free energy of solvation -29.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds